The draft genome of a diploid cotton Gossypium raimondii

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

The draft genome of a diploid cotton Gossypium raimondii. / Wang, Kunbo; Wang, Zhiwen; Li, Fuguang; Ye, Wuwei; Wang, Junyi; Song, Guoli; Yue, Zhen; Cong, Lin; Shang, Haihong; Zhu, Shilin; Zou, Changsong; Li, Qin; Yuan, Youlu; Lu, Cairui; Wei, Hengling; Gou, Caiyun; Zheng, Zequn; Yin, Ye; Zhang, Xueyan; Liu, Kun; Wang, Bo; Song, Chi; Shi, Nan; Kohel, Russell J.; Percy, Richard G.; Yu, John Z.; Zhu, Yu-Xian; Wang, Jun; Yu, Shuxun.

In: Nature Genetics, Vol. 44, No. 10, 2012, p. 1098-1103.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Wang, K, Wang, Z, Li, F, Ye, W, Wang, J, Song, G, Yue, Z, Cong, L, Shang, H, Zhu, S, Zou, C, Li, Q, Yuan, Y, Lu, C, Wei, H, Gou, C, Zheng, Z, Yin, Y, Zhang, X, Liu, K, Wang, B, Song, C, Shi, N, Kohel, RJ, Percy, RG, Yu, JZ, Zhu, Y-X, Wang, J & Yu, S 2012, 'The draft genome of a diploid cotton Gossypium raimondii', Nature Genetics, vol. 44, no. 10, pp. 1098-1103. https://doi.org/10.1038/ng.2371

APA

Wang, K., Wang, Z., Li, F., Ye, W., Wang, J., Song, G., Yue, Z., Cong, L., Shang, H., Zhu, S., Zou, C., Li, Q., Yuan, Y., Lu, C., Wei, H., Gou, C., Zheng, Z., Yin, Y., Zhang, X., ... Yu, S. (2012). The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics, 44(10), 1098-1103. https://doi.org/10.1038/ng.2371

Vancouver

Wang K, Wang Z, Li F, Ye W, Wang J, Song G et al. The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics. 2012;44(10):1098-1103. https://doi.org/10.1038/ng.2371

Author

Wang, Kunbo ; Wang, Zhiwen ; Li, Fuguang ; Ye, Wuwei ; Wang, Junyi ; Song, Guoli ; Yue, Zhen ; Cong, Lin ; Shang, Haihong ; Zhu, Shilin ; Zou, Changsong ; Li, Qin ; Yuan, Youlu ; Lu, Cairui ; Wei, Hengling ; Gou, Caiyun ; Zheng, Zequn ; Yin, Ye ; Zhang, Xueyan ; Liu, Kun ; Wang, Bo ; Song, Chi ; Shi, Nan ; Kohel, Russell J. ; Percy, Richard G. ; Yu, John Z. ; Zhu, Yu-Xian ; Wang, Jun ; Yu, Shuxun. / The draft genome of a diploid cotton Gossypium raimondii. In: Nature Genetics. 2012 ; Vol. 44, No. 10. pp. 1098-1103.

Bibtex

@article{3d92139e9c2447c29ec4c194ec4ecfa2,
title = "The draft genome of a diploid cotton Gossypium raimondii",
abstract = "We have sequenced and assembled a draft genome of G. raimondii, whose progenitor is the putative contributor of the D subgenome to the economically important fiber-producing cotton species Gossypium hirsutum and Gossypium barbadense. Over 73% of the assembled sequences were anchored on 13 G. raimondii chromosomes. The genome contains 40,976 protein-coding genes, with 92.2% of these further confirmed by transcriptome data. Evidence of the hexaploidization event shared by the eudicots as well as of a cotton-specific whole-genome duplication approximately 13-20 million years ago was observed. We identified 2,355 syntenic blocks in the G. raimondii genome, and we found that approximately 40% of the paralogous genes were present in more than 1 block, which suggests that this genome has undergone substantial chromosome rearrangement during its evolution. Cotton, and probably Theobroma cacao, are the only sequenced plant species that possess an authentic CDN1 gene family for gossypol biosynthesis, as revealed by phylogenetic analysis.",
author = "Kunbo Wang and Zhiwen Wang and Fuguang Li and Wuwei Ye and Junyi Wang and Guoli Song and Zhen Yue and Lin Cong and Haihong Shang and Shilin Zhu and Changsong Zou and Qin Li and Youlu Yuan and Cairui Lu and Hengling Wei and Caiyun Gou and Zequn Zheng and Ye Yin and Xueyan Zhang and Kun Liu and Bo Wang and Chi Song and Nan Shi and Kohel, {Russell J.} and Percy, {Richard G.} and Yu, {John Z.} and Yu-Xian Zhu and Jun Wang and Shuxun Yu",
year = "2012",
doi = "10.1038/ng.2371",
language = "English",
volume = "44",
pages = "1098--1103",
journal = "Nature Genetics",
issn = "1061-4036",
publisher = "nature publishing group",
number = "10",

}

RIS

TY - JOUR

T1 - The draft genome of a diploid cotton Gossypium raimondii

AU - Wang, Kunbo

AU - Wang, Zhiwen

AU - Li, Fuguang

AU - Ye, Wuwei

AU - Wang, Junyi

AU - Song, Guoli

AU - Yue, Zhen

AU - Cong, Lin

AU - Shang, Haihong

AU - Zhu, Shilin

AU - Zou, Changsong

AU - Li, Qin

AU - Yuan, Youlu

AU - Lu, Cairui

AU - Wei, Hengling

AU - Gou, Caiyun

AU - Zheng, Zequn

AU - Yin, Ye

AU - Zhang, Xueyan

AU - Liu, Kun

AU - Wang, Bo

AU - Song, Chi

AU - Shi, Nan

AU - Kohel, Russell J.

AU - Percy, Richard G.

AU - Yu, John Z.

AU - Zhu, Yu-Xian

AU - Wang, Jun

AU - Yu, Shuxun

PY - 2012

Y1 - 2012

N2 - We have sequenced and assembled a draft genome of G. raimondii, whose progenitor is the putative contributor of the D subgenome to the economically important fiber-producing cotton species Gossypium hirsutum and Gossypium barbadense. Over 73% of the assembled sequences were anchored on 13 G. raimondii chromosomes. The genome contains 40,976 protein-coding genes, with 92.2% of these further confirmed by transcriptome data. Evidence of the hexaploidization event shared by the eudicots as well as of a cotton-specific whole-genome duplication approximately 13-20 million years ago was observed. We identified 2,355 syntenic blocks in the G. raimondii genome, and we found that approximately 40% of the paralogous genes were present in more than 1 block, which suggests that this genome has undergone substantial chromosome rearrangement during its evolution. Cotton, and probably Theobroma cacao, are the only sequenced plant species that possess an authentic CDN1 gene family for gossypol biosynthesis, as revealed by phylogenetic analysis.

AB - We have sequenced and assembled a draft genome of G. raimondii, whose progenitor is the putative contributor of the D subgenome to the economically important fiber-producing cotton species Gossypium hirsutum and Gossypium barbadense. Over 73% of the assembled sequences were anchored on 13 G. raimondii chromosomes. The genome contains 40,976 protein-coding genes, with 92.2% of these further confirmed by transcriptome data. Evidence of the hexaploidization event shared by the eudicots as well as of a cotton-specific whole-genome duplication approximately 13-20 million years ago was observed. We identified 2,355 syntenic blocks in the G. raimondii genome, and we found that approximately 40% of the paralogous genes were present in more than 1 block, which suggests that this genome has undergone substantial chromosome rearrangement during its evolution. Cotton, and probably Theobroma cacao, are the only sequenced plant species that possess an authentic CDN1 gene family for gossypol biosynthesis, as revealed by phylogenetic analysis.

U2 - 10.1038/ng.2371

DO - 10.1038/ng.2371

M3 - Journal article

C2 - 22922876

VL - 44

SP - 1098

EP - 1103

JO - Nature Genetics

JF - Nature Genetics

SN - 1061-4036

IS - 10

ER -

ID: 46234440