Bioinformatics projects – Department of Biology - University of Copenhagen

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Bioinformatics projects

The list is ordered alphabetically according to project title. Click the title to see details.

Are differences in the composition of gut communities between different fungus-growing termite genera driven by consumption of different food fungi?
Supervisor: Aram Mikaelyan and Michael Thomas-Poulsen

Are eucalypt leaf volatiles inducible?
Supervisor: Riikka Rinnan (BIO), Elizabeth Neilson (PLEN)

Bacterial composition, diversity and function in marine waters - molecular microbiology projects
Supervisor: Lasse Riemann

Bacterial cooperation in multispecies biofilms associated to food production devices
Supervisor: Søren J. Sørensen og Mette Burmølle

Biogenic volatile organic compounds - release from plants, microbes and ecosystems
Supervisor: Riikka Rinnan and others depending on the topic

Bioinformatics approaches for assembly and characterization of novel circular complete plasmids from publically available Escherichia coli genomes
Supervisor: Søren J. Sørensen og Waleed Abu Al-Soud

CENPERM - Center for Permafrost
Supervisor: Anders Michelsen, Riikka Rinnan, Anders Prieme, Helge Ro-Poulsen

Characterization of bacterial mercury resistance in High Arctic bacteria
Supervisor: Niels Kroer (nk@bio.ku.dk) & Søren J. Sørensen (sjs@bio.ku.dk)

Decomposition of large herbivore dung
Supervisor: Riikka Rinnan & Peter Holter

Determining the bacteria associated with fibre digestion in the burrowing cockroach Pycnoscelus surinamensis
Supervisor: Aram Mikaelyan and Michael Thomas-Poulsen

Differential gene expression in multispecies biofilm
Supervisor: Mette Burmølle

Foliar pathogens in Danish agriculture: communities, populations, disease and resistance
Supervisor: Rasmus Kjøller

Forensic use of DNA and organisms to link soil with crime scenes
Supervisor: Rasmus Kjøller, Tobias Frøslev, Mette Vestergaard and Anders Hansen (SNM)

Genetic characterization of bacterial human virulence genes in non-host environmental bacteria
Supervisor: Niels Kroer (nk@bio.ku.dk) & Søren J. Sørensen (sjs@bio.ku.dk)

Microbial production and uptake of volatile organic compounds
Supervisor: Riikka Rinnan (BIO) & Christian Albers (GEUS)

Name a new parasite!
Supervisor: Rune Stensvold, Laboratory of Parasitology, Statens Serum Institut & Søren Sørensen, Section of Microbiology, UCPH

Nitrogen cycling in arctic ecosystems: at present and in future
Supervisor: Jing Tang, Riikka Rinnan

Total biodiversity assessment in terrestrial ecosystems
Supervisor: Hans Henrik Bruun, Rasmus Kjøller, Susana Santos, Tobias Frøslev.

Virus-driven reprogramming of bacterial traits
Supervisor: Mathias Middelboe