On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Standard

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. / Ienasescu, Hans-Ioan; Li, Kang; Andersson, Robin; Vitezic, Morana; Rennie, Sarah; Chen, Yun; Vitting-Seerup, Kristoffer; Lagoni, Emil; Boyd, Mette; Lange, Jette Bornholdt; de Hoon, Michiel J. L.; Kawaji, Hideya; Lassmann, Timo; FANTOM Consortium; Hayashizaki, Yoshihide; Forrest, Alistair R. R.; Carninci, Piero; Sandelin, Albin Gustav.

I: Database: The Journal of Biological Databases and Curation, Bind 2016, Nr. 0, baw144, 2016.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Ienasescu, H-I, Li, K, Andersson, R, Vitezic, M, Rennie, S, Chen, Y, Vitting-Seerup, K, Lagoni, E, Boyd, M, Lange, JB, de Hoon, MJL, Kawaji, H, Lassmann, T, FANTOM Consortium, Hayashizaki, Y, Forrest, ARR, Carninci, P & Sandelin, AG 2016, 'On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase', Database: The Journal of Biological Databases and Curation, bind 2016, nr. 0, baw144. https://doi.org/10.1093/database/baw144

APA

Ienasescu, H-I., Li, K., Andersson, R., Vitezic, M., Rennie, S., Chen, Y., Vitting-Seerup, K., Lagoni, E., Boyd, M., Lange, J. B., de Hoon, M. J. L., Kawaji, H., Lassmann, T., FANTOM Consortium, Hayashizaki, Y., Forrest, A. R. R., Carninci, P., & Sandelin, A. G. (2016). On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. Database: The Journal of Biological Databases and Curation, 2016(0), [baw144]. https://doi.org/10.1093/database/baw144

Vancouver

Ienasescu H-I, Li K, Andersson R, Vitezic M, Rennie S, Chen Y o.a. On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. Database: The Journal of Biological Databases and Curation. 2016;2016(0). baw144. https://doi.org/10.1093/database/baw144

Author

Ienasescu, Hans-Ioan ; Li, Kang ; Andersson, Robin ; Vitezic, Morana ; Rennie, Sarah ; Chen, Yun ; Vitting-Seerup, Kristoffer ; Lagoni, Emil ; Boyd, Mette ; Lange, Jette Bornholdt ; de Hoon, Michiel J. L. ; Kawaji, Hideya ; Lassmann, Timo ; FANTOM Consortium ; Hayashizaki, Yoshihide ; Forrest, Alistair R. R. ; Carninci, Piero ; Sandelin, Albin Gustav. / On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. I: Database: The Journal of Biological Databases and Curation. 2016 ; Bind 2016, Nr. 0.

Bibtex

@article{ea64682ae9e4457396d321e38ad492ba,
title = "On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase",
abstract = "Genomics consortia have produced large datasets profiling the expression of genes, micro-RNAs, enhancers and more across human tissues or cells. There is a need for intuitive tools to select subsets of such data that is the most relevant for specific studies. To this end, we present SlideBase, a web tool which offers a new way of selecting genes, promoters, enhancers and microRNAs that are preferentially expressed/used in a specified set of cells/tissues, based on the use of interactive sliders. With the help of sliders, SlideBase enables users to define custom expression thresholds for individual cell types/tissues, producing sets of genes, enhancers etc. which satisfy these constraints. Changes in slider settings result in simultaneous changes in the selected sets, updated in real time. SlideBase is linked to major databases from genomics consortia, including FANTOM, GTEx, The Human Protein Atlas and BioGPS.Database URL: http://slidebase.binf.ku.dk.",
author = "Hans-Ioan Ienasescu and Kang Li and Robin Andersson and Morana Vitezic and Sarah Rennie and Yun Chen and Kristoffer Vitting-Seerup and Emil Lagoni and Mette Boyd and Lange, {Jette Bornholdt} and {de Hoon}, {Michiel J. L.} and Hideya Kawaji and Timo Lassmann and {FANTOM Consortium} and Yoshihide Hayashizaki and Forrest, {Alistair R. R.} and Piero Carninci and Sandelin, {Albin Gustav}",
note = "{\textcopyright} The Author(s) 2016. Published by Oxford University Press.",
year = "2016",
doi = "10.1093/database/baw144",
language = "English",
volume = "2016",
journal = "Database : the journal of biological databases and curation",
issn = "1758-0463",
publisher = "Oxford University Press",
number = "0",

}

RIS

TY - JOUR

T1 - On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

AU - Ienasescu, Hans-Ioan

AU - Li, Kang

AU - Andersson, Robin

AU - Vitezic, Morana

AU - Rennie, Sarah

AU - Chen, Yun

AU - Vitting-Seerup, Kristoffer

AU - Lagoni, Emil

AU - Boyd, Mette

AU - Lange, Jette Bornholdt

AU - de Hoon, Michiel J. L.

AU - Kawaji, Hideya

AU - Lassmann, Timo

AU - FANTOM Consortium

AU - Hayashizaki, Yoshihide

AU - Forrest, Alistair R. R.

AU - Carninci, Piero

AU - Sandelin, Albin Gustav

N1 - © The Author(s) 2016. Published by Oxford University Press.

PY - 2016

Y1 - 2016

N2 - Genomics consortia have produced large datasets profiling the expression of genes, micro-RNAs, enhancers and more across human tissues or cells. There is a need for intuitive tools to select subsets of such data that is the most relevant for specific studies. To this end, we present SlideBase, a web tool which offers a new way of selecting genes, promoters, enhancers and microRNAs that are preferentially expressed/used in a specified set of cells/tissues, based on the use of interactive sliders. With the help of sliders, SlideBase enables users to define custom expression thresholds for individual cell types/tissues, producing sets of genes, enhancers etc. which satisfy these constraints. Changes in slider settings result in simultaneous changes in the selected sets, updated in real time. SlideBase is linked to major databases from genomics consortia, including FANTOM, GTEx, The Human Protein Atlas and BioGPS.Database URL: http://slidebase.binf.ku.dk.

AB - Genomics consortia have produced large datasets profiling the expression of genes, micro-RNAs, enhancers and more across human tissues or cells. There is a need for intuitive tools to select subsets of such data that is the most relevant for specific studies. To this end, we present SlideBase, a web tool which offers a new way of selecting genes, promoters, enhancers and microRNAs that are preferentially expressed/used in a specified set of cells/tissues, based on the use of interactive sliders. With the help of sliders, SlideBase enables users to define custom expression thresholds for individual cell types/tissues, producing sets of genes, enhancers etc. which satisfy these constraints. Changes in slider settings result in simultaneous changes in the selected sets, updated in real time. SlideBase is linked to major databases from genomics consortia, including FANTOM, GTEx, The Human Protein Atlas and BioGPS.Database URL: http://slidebase.binf.ku.dk.

U2 - 10.1093/database/baw144

DO - 10.1093/database/baw144

M3 - Journal article

C2 - 28025337

VL - 2016

JO - Database : the journal of biological databases and curation

JF - Database : the journal of biological databases and curation

SN - 1758-0463

IS - 0

M1 - baw144

ER -

ID: 172856781