Publications from

Total publications from unit:

2019

1.

Murillo L. Martins, Alexander B. Dinitzen, Eugene Mamontov, Svemir Rudic, Jose E. M. Pereira, Rasmus Hartmann-Petersen, Kenneth W. Herwig and Heloisa N. Bordallo. (2019) Water dynamics in MCF-7 breast cancer cells: a neutron scattering descriptive study Scientific Reports 9.

2.

Lise Friis Christensen, Lasse Staby, Katrine Bugge, Charlotte O'Shea, Birthe B. Kragelund and Karen Skriver. (2019) Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome Scientific Reports 9.

2018

3.

Katrine Østergaard Bugge, Lasse Staby, Katherine Rosemary Kemplen, Charlotte O'Shea, Sidsel Krogh Bendsen, Mikael Kryger Jensen, Johan Gotthardt Olsen, Karen Skriver and Birthe Brandt Kragelund. (2018) Structure of radical-induced cell death1 hub domain reveals a common aa-scaffold for disorder in transcriptional networks Structure 26(5):734-746.

4.

Maher M. Kassem, Lars B. Christoffersen, Andrea Cavalli and Kresten Lindorff-Larsen. (2018) Enhancing coevolution-based contact prediction by imposing structural self-consistency of the contacts Scientific Reports 8.

5.

Manoj K. Singh, Sandra Richter, Hauke Beckmann, Marika Kientz, York-Dieter Stierhof, Nadine Anders, Florian Fäßler, Michael Nielsen, Christian Knöll, Alexis Thomann, Mirita Franz-Wachtel, Boris M (2018) A single class of ARF GTPase activated by several pathway-specific ARF-GEFs regulates essential membrane traffic in Arabidopsis PLOS Genetics 14(11):1-36.

6.

Maria Louise Mønster Jørgensen, Babatunde Ekundayo, Mikel Zaratiegui, Karen Skriver, Genevieve Thon and Thomas Schalch. (2018) Structure of the replication regulator Sap1 reveals functionally important interfaces Scientific Reports 8.

2017

7.

Farah Deeba, Tasawar Sultana, Tariq Mahmood, Charlotte O'Shea, Karen Skriver and S. M. Saqlan Naqvi. (2017) Involvement of WRKY, MYB and DOF DNA-binding proteins in interaction with a rice germin-like protein gene promoter Acta Physiologiae Plantarum 39.

8.

Lasse Staby, Charlotte O'Shea, Martin Willemoës, Frederik Theisen, Birthe Brandt Kragelund and Karen Skriver. (2017) Eukaryotic transcription factors: paradigms of protein intrinsic disorder Biochemical Journal 474(15):2509-2532.

9.

Charlotte O'Shea, Lasse Staby, Sidsel Krogh Bendsen, Frederik Grønbæk Tidemand, Andreas Redsted, Martin Willemoës, Birthe Brandt Kragelund and Karen Skriver. (2017) Structures and short linear motif of disordered transcription factor regions provide clues to the interactome of the cellular hub radical-induced cell death1 Journal of Biological Chemistry 292(2):512-527.

2016

10.

Ditte H. Welner, Farah Deeba, Leila Lo Leggio and Karen Skriver. (2016) NAC transcription factors: from structure to function in stress-associated networks Book chapter in False Daniel H. Gonzalez. (eds.) Academic Press, p. 199-212.

11.

Michael W. Christiansen, Colette Matthewman, Dagmara Agata Podzimska-Sroka, Charlotte O'Shea, Søren Lindemose, Niels Erik Møllegaard, Inger Bæksted Holme, Kim Hebelstrup, Karen Skriver and Per L. Grege (2016) Barley plants over-expressing the NAC transcription factor gene HvNAC005 show stunting and delay in development combined with early senescence Journal of Experimental Botany 67(17):5259-5273.

12.

Michael May, Karen Skriver and Gert Dandanell. (2016) Towards a cognitive semiotics of science: the case of physical chemistry Book chapter in False Jordan Zlatev, Göran Sonesson and Piotr Konderak. (eds.) Peter Lang, p. 101-126.

2015

13.

Karen Skriver, Gert Dandanell, Jakob Hjorth von Stemann and Michael May. (2015) Udfordringer ved undervisning i enzymer: Bidrag fra det virtuelle laboratorium MONA - Matematik- og Naturfagsdidaktik 2015(1):49-65.

14.

Charlotte O'Shea, Mikael Kryger Jensen, Emil G.P. Stender, Birthe Brandt Kragelund, Martin Willemoës and Karen Skriver. (2015) Protein intrinsic disorder in Arabidopsis NAC transcription factors: transcriptional activation by ANAC013 and ANAC046 and their interactions with RCD1 Biochemical Journal 465(2):281-294.

15.

Dagmara Podzimska-Sroka, Charlotte O'Shea, Per L. Gregersen and Karen Skriver. (2015) NAC transcription factors in senescence: from molecular structure to function in crops Plants 4(3):412-448.

16.

Emil G. Stender, Charlotte O'Shea and Karen Skriver. (2015) Subgroup-specific intrinsic disorder profiles of arabidopsis NAC transcription factors: identification of functional hotspots Plant Signalling & Behavior 10(6).

2014

17.

Michael Krogh Jensen and Karen Skriver. (2014) NAC transcription factor gene regulatory and protein-protein interaction networks in plant stress responses and senescence I U B M B Life 66(3):156-166.

18.

Søren Lindemose, Michael K. Jensen, Jan Van de Velde, Charlotte O'Shea, Ken S. Heyndrickx, Christopher Workman, Klaas Vandepoele, Karen Skriver and Federico De Masi. (2014) A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana Nucleic Acids Research 42(12):7681-7693.

2013

19.

Michael Krogh Jensen, Søren Lindemose, Federico de Masi, Julia J. Reimer, Michael Nielsen, Venura Perera, Chris T. Workman, Franziska Turck, Murray R. Grant, John Mundy, Morten Petersen and Karen  (2013) ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana FEBS Open Bio 3:321-327.

20.

Naoyuki Umemoto, Takayuki Ohnuma, Mamiko Mizuhara, Hirokazu Sato, Karen Skriver and Tamo Fukamizo. (2013) Introduction of a tryptophan side chain into subsite +1 enhances transglycosylation activity of a GH-18 chitinase from Arabidopsis thaliana, AtChiC Glycobiology 23(1):81-90.

21.

Søren Lindemose, Charlotte O'Shea, Michael Krogh Jensen and Karen Skriver. (2013) Structure, function and networks of transcription factors involved in abiotic stress responses International Journal of Molecular Sciences (Online) 14(3):5842-78.

2012

22.

Birthe Brandt Kragelund, Michael Krogh Jensen and Karen Skriver. (2012) Order by disorder in plant signaling Trends in Plant Science 17(11):625-632.

23.

Ditte Hededam Welner, Søren Lindemose, J. Günter Grossmann, Niels Erik Møllegaard, Addie Nina Olsen, Charlotte Helgstrand, Karen Skriver and Leila Lo Leggio. (2012) DNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors Biochemical Journal 444:395-404.

2011

24.

T. Letzel, E. Sahmel-Schneide, K. Skriver, T. Ohnuma and T. Fukamizo. (2011) Chitinase-catalyzed hydrolysis of 4-nitrophenyl penta-N-acetyl-B-chitopentaoside as determined by real-time ESI-MS: The 4-nitrophenyl moiety of the substrate interacts with the enzyme binding site Carbohydrate Research 346(6):863-866.

25.

Takayuki Ohnuma, Tomoyuki Numata, Takuo Osawa, Mamiko Mizuhara, Outi Lampela, André H Juffer, Karen Skriver and Tamo Fukamizo. (2011) A class V chitinase from Arabidopsis thaliana: gene responses, enzymatic properties, and crystallographic analysis Planta 234(1):123-37.

26.

Trine Kjaersgaard, Michael K Jensen, Michael W Christiansen, Per L. Gregersen, Birthe B Kragelund and Karen Skriver. (2011) Senescence-associated barley NAC (NAM, ATAF1,2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain Journal of Biological Chemistry 286(41):35418-29.

2010

27.

Michael K Jensen, Trine Kjaersgaard, Michael M. Nielsen, Pernille Galberg, Klaus Petersen, Charlotte O'Shea and Karen Skriver. (2010) The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling Biochemical Journal 426(2):183-96.

28.

Michael Krogh Jensen, Trine Kjærsgaard, Klaus Petersen and Karen Skriver. (2010) NAC genes: Time-specific regulators of hormonal signaling in Arabidopsis Plant Signalling & Behavior 5(7).

2009

29.

Nicole Dennhart, Linda M M Weigang, Maho Fujiwara, Tamo Fukamizo, Karen Skriver and Thomas Letzel. (2009) 26kDa endochitinase from barley seeds: real-time monitoring of the enzymatic reaction and substrate binding experiments using electrospray ionization mass spectrometry Journal of Biotechnology 143(4):274-83.

30.

Tamo Fukamizo, Ryoh Miyake, Atsushi Tamura, Tasayuki Ohnuma, Karen Skriver, Niko Pursiainen and Andre Juffer. (2009) A flexible loop controlling the enzymatic activity and specificity in a glycosyl hydrolase family 19 endochitinase from barley seeds Biochimica et Biophysica Acta - Proteins and Proteomics 1794(8):1159-1167.

2008

31.

Jakob Wiborg, Charlotte O'Shea and Karen Skriver. (2008) Biochemical function of typical and variant Arabidopsis thaliana U-box E3 ubiquitin-protein ligases Biochemical Journal 413(3):447-457.

32.

Nadine Anders, Michael M. Nielsen, Jutta Keicher, York-Dieter Stierhof, Masahiko Furutani, Gerd Jürgens, Masao Tasaka and Karen Skriver. (2008) Membrane association of the Arabidopsis ARF exchange factor GNOM involves interaction of conserved domains Plant Cell 20(1):142-51.

2006

33.

Michael Nielsen, Jacob Albrethsen, Flemming Hofmann Larsen and K. Skriver. (2006) The Arabidopsis ADP-ribosylation factor (ARF) and ARF-like (ARL) system and its regulation by BIG2, a large ARF-GEF Plant Science 171(6):707-717.

2005

34.

Addie Nina Olsen, Heidi Asschenfeldt Ernst, Leila Lo Leggio and Karen Skriver. (2005) DNA-binding specificity and molecular functions of NAC transcription factors Plant Science 169(4):785-797.

35.

Tsuneo Ohnishi, André H Juffer, Masahiro Tamoi, Karen Skriver and Tamo Fukamizo. (2005) 26 kDa endochitinase from barley seeds: an interaction of the ionizable side chains essential for catalysis Journal of Biochemistry 138(5):553-62.

2004

36.

Addie Nina Olsen, Heidi Asschenfeldt Ernst, Leila Lo Leggio, Eva Helena Johansson, Sine Larsen and Karen Skriver. (2004) Preliminary crystallographic analysis of the NAC domain of ANAC, a member of the plant-specific NAC transcription factor family Acta Crystallographica. Section D: Biological Crystallography 60:112-115.

37.

Heidi Asschenfeldt Ernst, Addie Nina Olsen, Karen Skriver, Sine Larsen and Leila Lo Leggio. (2004) Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors EMBO Reports 5:297-303.

38.

Pernille Andersen, Birthe B Kragelund, Addie N Olsen, Flemming H Larsen, Nam-Hai Chua, Flemming M Poulsen and Karen Skriver. (2004) Structure and biochemical function of a prototypical Arabidopsis U-box domain Journal of Biological Chemistry 279(38):40053-40061.

39.

Tanja la Cour, Lars Kiemer, Anne Mølgaard, Ramneek Gupta, Karen Skriver and Søren Brunak. (2004) Analysis and prediction of leucine-rich nuclear export signals. Protein Engineering Design and Selection (Print Edition) 17(6):527-36.

2003

40.

Addie Nina Olsen and K. Skriver. (2003) Ligand mimicry? Plant-parasitic nematode polypeptide with similarity to CLAVATA3 Trends in Plant Science(8):55-57.

41.

Krestine Greve, Tanja La Cour Bravo Munoz, Michael Krogh Jensen, Flemming Martin Poulsen and K. Skriver. (2003) Interactions between plant RING-H2 and plant-specific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization. Biochemical Journal(371):97-108.

42.

Tanja La Cour Bravo Munoz, R. Gupta, K. Rapacki, K. Skriver, Flemming Martin Poulsen and S. Brunak. (2003) NESbase version 1.0: a database of nuclear export signals. Nucleic Acids Research(31):1393-1396.

2002

43.

Addie Nina Olsen, John Mundy and Karen Skriver. (2002) Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. In Silico Biology 2(4):441-51.

2001

44.

Rikke B. Jensen, Tanja la Cour, Jacob Albrethsen, Michael Marinus Nielsen and Karen Skriver. (2001) FYVE zinc-finger proteins in the plant model Arabidopsis thaliana: idenfication of Ptdins3P-binding residues by comparison of classic and variant FYVE dominans. Biochemical Journal(359):165-173.

2000

45.

R B Jensen, K Lykke-Andersen, G I Frandsen, J Haseloff, H M Jespersen, J Mundy and K Skriver. (2000) Promiscuous and specific phospholipid binding by domains in ZAC, a membrane-associated Arabidopsis protein with an ARF GAP zinc finger and a C2 domain. Plant Molecular Biology 44(6):799-814.

1999

46.

Rikke Jensen, Karen Skriver and Hans Jespersen. (1999) PMZ, a cDNA from Arabidopsis thaliana encoding a putative novel zinc finger motif with homologs in vertabrates and mammals Plant Molecular Biology 40:745.

1998

47.

Dora Raventos Segura, K. Skriver, M. Schlein, K. Karnahl, S. Rogers, J.C. Rogers and John Williams Mundy. (1998) HRT, a novel transcriptional repressor from plants Journal of Biological Chemistry(273):23313-20.

1996

48.

Gitte Frandsen, Frieder Muller-Uri, Michael Nielsen, John Mundy and Karen Skriver. (1996) Novel plant Ca2+-binding protein expressed in response to abscisic acid and osmotic stress The Journal of Biological Chemistry 271:343-348.

1994

49.

Bushra Chaudhry, Frieder Müller-Uri, Verena Cameron-Mills, Simon Gough, David Simpson, K. Skriver and John Williams Mundy. (1994) The barley 60 kDa jasmonate-induced protein (JIP60) is a novel ribosome-inactivating protein Plant Journal:815-824.

50.

Robert Leah, K. Skriver, Søren Knudsen, Jan Ruud-Hansen, Natasha V. Raikhei and John Williams Mundy. (1994) Identification of an enhancer/silencer sequence directing the aleurone-specific expression of a barley chitinase gene Plant Journal:579-589.

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