Freshwater Biology

  1. 2024
  2. Published

    Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops

    Fagerstedt, K. V., Pucciariello, C., Pedersen, Ole & Perata, P., 2024, In: Journal of Experimental Botany. 75, 5, p. 1217–1233 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

    Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere

    Jackson, M. C., Friberg, N., Moliner Cachazo, L., Clark, D. R., Mutinova, P. T., O’Gorman, E. J., Kordas, R. L., Gallo, B., Pichler, D. E., Bespalaya, Y., Aksenova, O. V., Milner, A., Brooks, S. J., Dunn, N., Lee, K. W. K., Ólafsson, J. S., Gíslason, G. M., Millan, L., Bell, T., Dumbrell, A. J. & 1 others, Woodward, G., 2024, In: Communications Biology . 7, 1, 8 p., 316.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Flooding stress and responses to hypoxia in plants

    Jimenez Serna, Juan de la Cruz, Mustroph, A., Pedersen, Ole, Weits, D. A. & Schmidt-schippers, R., 2024, In: Functional Plant Biology. 51, 4, 5 p., FP24061.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. E-pub ahead of print

    Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

    Jimenez Serna, Juan de la Cruz, Armstrong, W., Colmer, T. D. & Pedersen, Ole, 2024, (E-pub ahead of print) In: Plant Physiology. kiae046.

    Research output: Contribution to journalComment/debateResearchpeer-review

  7. Published

    Flooding-adaptive root and shoot traits in rice

    Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

    Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published
  10. Published

    Root acclimations to soil flooding prime rice (Oryza sativa L.) for subsequent conditions of water deficit

    Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa, Liu, Fulai, Tomasella, M., Nardini, A. & Pedersen, Ole, 2024, In: Plant and Soil. 494, p. 529-546

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

    Polauke, E., Sø, Jonas Stage, Carl, Henrik, Møller, Peter Rask, Reitzel, K., Sand-Jensen, Kaj & Kragh, T., 2024, In: Journal of Environmental Management. 356

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Meta‐analysis Contrasting Freshwater Biodiversity in Forests and Oil Palm Plantations with and without Riparian Buffers

    Rojas‐Castillo, O. A., Kepfer Rojas, Sebastian, Juen, L., Fogaça De Assis Montag, L., Carvalho, F. G., Mendes, T. P., Chua, K. W. J., Wilkinson, C. L., Amal, M. N. A., Fahmi‐Ahmad, M. & Jacobsen, Dean, 2024, In: Conservation Biology. 38, 1, p. 1-14 14 p., e14172.

    Research output: Contribution to journalReviewResearchpeer-review

  13. Published

    Hourly methane and carbon dioxide fluxes from temperate ponds

    Sø, Jonas Stage, Martinsen, Kenneth Thorø, Kragh, T. & Sand-Jensen, Kaj, 2024, In: Biogeochemistry. 167, p. 177-195 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. E-pub ahead of print

    Hypoxia in tomato (Solanum lycopersicum) fruit during ripening: Biophysical elucidation by a 3D reaction–diffusion model

    Xiao, H., Verboven, P., Tong, Shuai, Pedersen, Ole & Nicolaï, B., 2024, (E-pub ahead of print) In: Plant Physiology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. 2023
  16. Published

    Rapid and continuing regional decline of butterflies in eastern Denmark 1993-2019

    Bjerregård, E. B., Båstrup-Spohr, Lars, Markussen, Bo & Bruun, Hans Henrik, 2023, In: Biological Conservation. 284, 8 p., 110208.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Legally protect marine food web’s lower echelons

    Bürkert, Johanna Sophie, Catonini, Federica, Bittner, Meriel Jennifer, Moedt, Sanne Mariël & Lützenburg, Gregor, 2023, In: Nature. 614, p. 624

    Research output: Contribution to journalComment/debateResearch

  18. Published

    Restricted O2 consumption in pea roots induced by hexanoic acid is linked to depletion of Krebs cycle substrates

    Casolo, V., Zancani, M., Pellegrini, Elisa, Filippi, A., Gargiulo, S., Konnerup, D., Morandini, P. & Pedersen, Ole, 2023, In: Physiologia Plantarum. 175, 5, 13 p., e14024.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Bacterial bioindicators enable biological status classification along the continental Danube river

    Fontaine, L., Pin, L., Savio, D., Friberg, N., Kirschner, A. K. T., Farnleitner, A. H. & Eiler, A., 2023, In: Communications Biology . 6, 1, 11 p., 862.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Compositional breakpoints of freshwater plant communities across continents

    García-Girón, J., Heino, J., Båstrup-Spohr, Lars, Clayton, J., Winton, M. D., Feldmann, T., Fernández-Aláez, C., Ecke, F., Grillas, P., Hoyer, M. V., Kolada, A., Kosten, S., Lukács, B. A., Mjelde, M., Mormul, R. P., Rhazi, L., Rhazi, M., Sass, L., Xu, J. & Alahuhta, J., 2023, In: Limnetica. 42, 2, 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Restricted O2 consumption in pea roots induced by hexanoic acid is linked to depletion of Krebs cycle substrates

    Gargiulo, S., Casolo, V., Zancani, M., Pellegrini, Elisa, Filippi, A., Konnerup, D., Morandini, P. & Pedersen, Ole, 2023, p. 55. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  22. Published

    The global EPTO database: Worldwide occurrences of aquatic insects

    Grigoropoulou, A., Hamid, S. A., Acosta, R., Akindele, E. O., Al‐shami, S. A., Altermatt, F., Amatulli, G., Angeler, D. G., Arimoro, F. O., Aroviita, J., Astorga‐roine, A., Bastos, R. C., Bonada, N., Boukas, N., Brand, C., Bremerich, V., Bush, A., Cai, Q., Callisto, M., Chen, K. & 73 others, Cruz, P. V., Dangles, O., Death, R., Deng, X., Domínguez, E., Dudgeon, D., Eriksen, T. E., Faria, A. P. J., Feio, M. J., Fernández‐aláez, C., Floury, M., García‐criado, F., García‐girón, J., Graf, W., Grönroos, M., Haase, P., Hamada, N., He, F., Heino, J., Holzenthal, R., Huttunen, K., Jacobsen, Dean, Jähnig, S. C., Jetz, W., Johnson, R. K., Juen, L., Kalkman, V., Kati, V., Keke, U. N., Koroiva, R., Kuemmerlen, M., Langhans, S. D., Ligeiro, R., Van looy, K., Maasri, A., Marchant, R., Garcia marquez, J. R., Martins, R. T., Melo, A. S., Metzeling, L., Miserendino, M. L., Moe, S. J., Molineri, C., Muotka, T., Mustonen, K., Mykrä, H., Cavalcante do nascimento, J. M., Valente‐neto, F., Neu, P. J., Nieto, C., Pauls, S. U., Paulson, D. R., Rios‐touma, B., Rodrigues, M. E., De Oliveira roque, F., Salazar Salina, J., Schmera, D., Schmidt‐kloiber, A., Shah, D., Simaika, J. P., Siqueira, T., Tachamo‐shah, R. D., Theischinger, G., Thompson, R., Tonkin, J. D., Torres‐cambas, Y., Townsend, C., Turak, E., Twardochleb, L., Wang, B., Yanygina, L., Zamora‐muñoz, C. & Domisch, S., 2023, In: Global Ecology and Biogeography. 32, 5, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Estuarine Seagrasses

    Gruber, R. K., Gurbisz, C., Borum, Jens & Kemp, W. M., 2023, Estuarine Ecology. Crump, B. C., Testa, J. M. & Dunton, K. H. (eds.). 3 ed. John/Wiley & Sons, Inc. John/Wiley & Sons Ltd., 20 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearch

  24. Published

    The recovery of European freshwater biodiversity has come to a halt

    Haase, P., Bowler, D. E., Baker, N. J., Bonada, N., Domisch, S., Garcia Marquez, J. R., Heino, J., Hering, D., Jähnig, S. C., Schmidt-Kloiber, A., Stubbington, R., Altermatt, F., Álvarez-Cabria, M., Amatulli, G., Angeler, D. G., Archambaud-Suard, G., Jorrín, I. A., Aspin, T., Azpiroz, I., Bañares, I. & 76 others, Ortiz, J. B., Bodin, C. L., Bonacina, L., Bottarin, R., Cañedo-Argüelles, M., Csabai, Z., Datry, T., de Eyto, E., Dohet, A., Dörflinger, G., Drohan, E., Eikland, K. A., England, J., Eriksen, T. E., Evtimova, V., Feio, M. J., Ferréol, M., Floury, M., Forcellini, M., Forio, M. A. E., Fornaroli, R., Friberg, N., Fruget, J. F., Georgieva, G., Goethals, P., Graça, M. A. S., Graf, W., House, A., Huttunen, K. L., Jensen, T. C., Johnson, R. K., Jones, J. I., Kiesel, J., Kuglerová, L., Larrañaga, A., Leitner, P., L’Hoste, L., Lizée, M. H., Lorenz, A. W., Maire, A., Arnaiz, J. A. M., McKie, B. G., Millán, A., Monteith, D., Muotka, T., Murphy, J. F., Ozolins, D., Paavola, R., Paril, P., Peñas, F. J., Pilotto, F., Polášek, M., Rasmussen, J. J., Rubio, M., Sánchez-Fernández, D., Sandin, L., Schäfer, R. B., Scotti, A., Shen, L. Q., Skuja, A., Stoll, S., Straka, M., Timm, H., Tyufekchieva, V. G., Tziortzis, I., Uzunov, Y., van der Lee, G. H., Vannevel, R., Varadinova, E., Várbíró, G., Velle, G., Verdonschot, P. F. M., Verdonschot, R. C. M., Vidinova, Y., Wiberg-Larsen, P. & Welti, E. A. R., 2023, In: Nature. 620, 7974, p. 582-588 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    A meta-analysis of plant tissue O2 dynamics

    Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Functional Plant Biology. 50, 7, 13 p.

    Research output: Contribution to journalReviewResearchpeer-review

  26. Published

    Enhancing Flood Tolerance in Wheat (Triticum aestivum) and Rice (Oryza sativa): Identifying Key Physiological Traits

    Herzog, Max, Tong, Shuai, Kjær, Johan Emil, Konnerup, D., Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa & Pedersen, Ole, 2023. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  27. Published

    Mitigation of Greenhouse Gas Emissions from Rice via Manipulation of Key Root Traits

    Jimenez Serna, Juan de la Cruz & Pedersen, Ole, 2023, In: Rice. 16, 1, 10 p., 24.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Oxygen Depletion in Arctic Lakes: Circumpolar Trends, Biogeochemical Processes, and Implications of Climate Change

    Klanten, Y., Couture, R. M., Christoffersen, Kirsten Seestern, Vincent, W. F. & Antoniades, D., 2023, In: Global Biogeochemical Cycles. 37, 5, 20 p., e2022GB007616.

    Research output: Contribution to journalReviewResearchpeer-review

  29. Published

    Linkages between seagrass tissue O2 dynamics and ecosystem oxidation and feedbacks are revealed using microsensors in situ

    Koch, M., Johnson, C., MacLeod, K., Travis, L., Madden, C. & Pedersen, Ole, 2023, p. 221. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  30. Published

    A quantitative trait locus conferring flood tolerance to deepwater rice regulates the formation of two distinct types of aquatic adventitious roots

    Lin, C., Peralta Ogorek, Lucas León, Liu, D., Pedersen, Ole & Sauter, M., 2023, In: New Phytologist. 238, 4, 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Allometric relationships between leaf and petiole traits across 31 floating-leaved plants reveal a different adaptation pattern from terrestrial plants

    Liu, Y., Liu, H., Båstrup-Spohr, Lars, Li, Z., Li, W., Pan, J. & Cao, Y., 2023, In: Annals of Botany. 131, 3, 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Environmental predictors of lake fish diversity across gradients in lake age and spatial scale

    Martinsen, Kenneth Thorø, Kristensen, E., Båstrup-Spohr, Lars, Søndergaard, M., Carl, Henrik, Jeppesen, E., Sand-Jensen, Kaj & Kragh, T., 2023, In: Freshwater Biology. 68, 7, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Predicting lake bathymetry from the topography of the surrounding terrain using deep learning

    Martinsen, Kenneth Thorø, Sand-Jensen, Kaj & Selvan, Raghav, 2023, In: Limnology and Oceanography: Methods. 21, 10, p. 625-636

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Flood-tolerant rice for enhanced production and livelihood of smallholder farmers of Africa

    Mwakyusa, L., Dixit, S., Herzog, Max, Heredia, M. C., Madege, R. R. & Kilasi, N. L., 2023, In: Frontiers in Sustainable Food Systems. 7, 13 p., 1244460.

    Research output: Contribution to journalReviewResearchpeer-review

  35. Published

    Screening of potential donors for anaerobic stress tolerance during germination in rice

    Mwakyusa, L., Heredia, M. C., Kilasi, N. L., Madege, R. R., Herzog, Max & Dixit, S., 2023, In: Frontiers in Plant Science. 14, 13 p., 1261101.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Plastic debris in lakes and reservoirs

    Nava, V., Chandra, S., Aherne, J., Alfonso, M. B., Antão-Geraldes, A. M., Attermeyer, K., Bao, R., Bartrons, M., Berger, S. A., Biernaczyk, M., Bissen, R., Brookes, J. D., Brown, D., Cañedo-Argüelles, M., Canle, M., Capelli, C., Carballeira, R., Cereijo, J. L., Chawchai, S., Christensen, S. T. & 59 others, Christoffersen, Kirsten Seestern, de Eyto, E., Delgado, J., Dornan, T. N., Doubek, J. P., Dusaucy, J., Erina, O., Ersoy, Z., Feuchtmayr, H., Frezzotti, M. L., Galafassi, S., Gateuille, D., Gonçalves, V., Grossart, H. P., Hamilton, D. P., Harris, T. D., Kangur, K., Kankılıç, G. B., Kessler, R., Kiel, C., Krynak, E. M., Leiva-Presa, À., Lepori, F., Matias, M. G., Matsuzaki, S. I. S., McElarney, Y., Messyasz, B., Mitchell, M., Mlambo, M. C., Motitsoe, S. N., Nandini, S., Orlandi, V., Owens, C., Özkundakci, D., Pinnow, S., Pociecha, A., Raposeiro, P. M., Rõõm, E. I., Rotta, F., Salmaso, N., Sarma, S. S. S., Sartirana, D., Scordo, F., Sibomana, C., Siewert, D., Stepanowska, K., Tavşanoğlu, Ü. N., Tereshina, M., Thompson, J., Tolotti, M., Valois, A., Verburg, P., Welsh, B., Wesolek, B., Weyhenmeyer, G. A., Wu, N., Zawisza, E., Zink, L. & Leoni, B., 2023, In: Nature. 619, p. 317-322 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Reasons for the dramatic loss of Lobelia dortmanna, a keystone plant species of softwater lakes in the Northern Hemisphere

    Nielsen, S. R., Martinsen, Kenneth Thorø, Pedersen, Ole & Båstrup-Spohr, Lars, 2023, In: Freshwater Biology. 68, 10, p. 1673-1684 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    The barrier to radial oxygen loss protects roots against hydrogen sulphide intrusion and its toxic effect

    Peralta Ogorek, Lucas León, Takahashi, H., Nakazono, M. & Pedersen, Ole, 2023, In: New Phytologist. 238, 5, p. 1825-1837 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Salt-affected soils in Tanzanian agricultural lands: Type of soils and extent of the problem

    Omar, M. M., Shitindi, M. J., Massawe, B. H. J., Fue, K. G., Meliyo, J. L. & Pedersen, Ole, 2023, In: Sustainable Environment. 9, 1, 19 p., 2205731.

    Research output: Contribution to journalReviewResearchpeer-review

  40. Published

    Outer apoplastic barriers in roots: prospects for abiotic stress tolerance

    Peralta Ogorek, Lucas León, Jimenez Serna, Juan de la Cruz, Visser, E. J. W., Takahashi, H., Nakazono, M., Shabala, S. & Pedersen, Ole, 2023, In: Functional Plant Biology. 51, 11 p., FP23133.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    The impacts of the oil palm expansion on freshwater biodiversity and ecosystem functioning: The role of riparian buffers in mitigating stream biodiversity loss

    Rojas, Oscar, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 171 p.

    Research output: Book/ReportPh.D. thesisResearch

  42. Published

    Drivers and ecology of Ceratium furcoides invasion of a Brazilian subtropical reservoir and its interaction with the phytoplankton community

    Rojas-Castillo, O. A., Pereira, L., Buffon, P. & de Souza Cardoso, L., 2023, In: Limnologica. 101, 13 p., 126080.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Forest buffer-strips mitigate the negative impact of oil palm plantations on stream communities

    Rojas-castillo, O. A., Kepfer Rojas, Sebastian, Vargas, N. & Jacobsen, Dean, 2023, In: Science of the Total Environment. 873, 12 p., 162259.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Vandkraft Versus Vandmiljø: Et opløftende eksempel fra De italienske Alper

    Scotti, A., Bottarin, R. & Jacobsen, Dean, 2023, In: Aktuel Naturvidenskab. 4, p. 38-42 5 p.

    Research output: Contribution to journalJournal articleCommunication

  45. Published

    The quantitative importance of key root traits for radial water loss under low water potential

    Song, Zhiwei, Zonta, F., Peralta Ogorek, Lucas León, Bastegaard, V. K., Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Plant and Soil. 482, 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Floods stress in lowland rice production: experiences of rice farmers in Kilombero and Lower-Rufiji floodplains, Tanzania

    Sulle Michael, P., Mwakyusa, L., G. Sanga, H., J. Shitindi, M., Kwaslema, D. R., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Sustainable Food Systems. 7, 18 p., 1206754.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Uncovering spatiotemporal pattern of floods with Sentinel-1 synthetic aperture radar in major rice-growing river basins of Tanzania

    Sulle Michael, P., G. Sanga, H., J. Shitindi, M., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Earth Science. 11, 15 p., 1183834.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Methane and carbon dioxide fluxes at high spatiotemporal resolution from a small temperate lake

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, Kenneth Thorø, Polauke, E., Kjær, Johan Emil, Reitzel, K. & Kragh, T., 2023, In: Science of the Total Environment. 878, 11 p., 162895.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Nyt udstyr måler tabene af metan og CO2 fra søer

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, Kenneth Thorø & Kragh, T., 25 May 2023, Videnskab.dk.

    Research output: Other contributionNet publication - Internet publicationCommunication

  50. Published

    Drying of Springs in the Himalayan Region of Nepal: Perspectives of Local Government Leaders on Causes, Consequences, and Conservation Efforts

    Thapa, B., Bhattarai, C., Dahal, N., Tiwari, S. & Jacobsen, Dean, 2023, In: Mountain Research and Development. 43, 4, p. R9-R15 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?

    Tong, Shuai, Ashikari, M., Nagai, K. & Pedersen, Ole, 2023, In: Rice. 16, 1, 20 p., 13.

    Research output: Contribution to journalReviewResearchpeer-review

  52. Published

    Responses of key root traits in the genus Oryza to soil flooding mimicked by stagnant, deoxygenated nutrient solution

    Tong, Shuai, Kjær, Johan Emil, Peralta Ogorek, Lucas León, Pellegrini, Elisa, Song, Zhiwei, Pedersen, Ole & Herzog, Max, 2023, In: Journal of Experimental Botany. 74, 6, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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