Microbiology

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  1. 2024
  2. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements

    Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.

    Research output: Book/Report › Ph.D. thesis › Research

  5. Published

    Fertilizer regime and cultivar affect barley growth and rhizobiome composition

    Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study

    Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection

    Sadiq, F. A., De Reu, K., Yang, Nan, Burmølle, Mette & Heyndrickx, M., 2024, In: Biofilm. 7, 13 p., 100195.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

    Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

    Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The use of biomimetic surfaces to reduce single- and dual-species biofilms of Escherichia coli and Pseudomonas putida

    Teixeira-Santos, R., Azevedo, A., Romeu, M. J., Amador Hierro, Cristina Isabel, Gomes, L. C., Whitehead, K. A., Sjollema, J., Burmølle, Mette & Mergulhão, F. J., 2024, In: Biofilm. 7, 13 p., 100185.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems

    Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. 2023
  17. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A host of armor: Prokaryotic immune strategies against mobile genetic elements

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Birkholz, N. & Fineran, P. C., 2023, In: Cell Reports. 42, 7, 14 p., 112672.

    Research output: Contribution to journal › Review › Research › peer-review

  19. Published

    An overview of plasmid transfer in the plant microbiome

    Sanchez Salazar, Angela Maria, Taparia, Tanvi, Olesen, Asmus Kalckar, Acuña, J. J., Sørensen, Søren Johannes & Jorquera, M. A., 2023, In: Plasmid. 127, 11 p., 102695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Antifouling potential of enzymes applied to reverse osmosis membranes

    Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Associational Resistance to Predation by Protists in a Mixed Species Biofilm

    Goh, Y. F., Røder, Henriette Lyng, Chan, S. H., Ismail, M. H., Madsen, Jonas Stenløkke, Lee, K. W. K., Sørensen, Søren Johannes, Givskov, Michael, Burmølle, Mette, Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs

    Camara, Sarah, Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, Jonas Stenløkke, Fineran, P. C., Sørensen, Søren Johannes & Pinilla Redondo, Rafael, 2023, In: Nature. 623, 7987, p. 601-607 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention

    Kurth, J. K., Albrecht, M., Glaser, K., Karsten, U., Vestergaard, G., Armbruster, M., Kublik, S., Schmid, C. A. O., Schloter, M. & Schulz, S., 2023, In: Frontiers in Microbiology. 14, 16 p., 1169958.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

    Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment

    Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Conjugative plasmids inhibit extracellular electron transfer in Geobacter sulfurreducens

    Fessler, M., Madsen, Jonas Stenløkke & Zhang, Y., 2023, In: Frontiers in Microbiology. 14, 12 p., 1150091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Cooperative antibiotic resistance facilitates horizontal gene transfer

    Wang, Q., Wei, S., Silva, A. F. & Madsen, Jonas Stenløkke, 2023, In: ISME Journal. 17, 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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