Department of Biology

 

 
  1. 2024
  2. Published
  3. Published

    Drosophila cytokine GBP2 exerts immune responses and regulates GBP1 expression through GPCR receptor Mthl10

    Ono, M., Matsumura, T., Sung, E. J., Koyama, Takashi, Ochiai, M., Shears, S. B. & Hayakawa, Y., 2024, In: Insect Biochemistry and Molecular Biology. 167, 7 p., 104086.

    Research output: Contribution to journalJournal articlepeer-review

  4. Published

    A druggable conformational switch in the c-MYC transactivation domain

    Lama, D., Vosselman, T., Sahin, Cagla, Liaño-pons, J., Cerrato, C. P., Nilsson, L., Teilum, Kaare, Lane, D. P., Landreh, M. & Arsenian Henriksson, M., 2024, In: Nature Communications. 15, 1, 14 p., 1865.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    A mutational atlas for Parkin proteostasis

    Clausen, L., Voutsinos, Vasileios, Cagiada, Matteo, Johansson, Kristoffer Enøe, Grønbæk-Thygesen, Martin, Nariya, S., Powell, R. L., Have, M. K. N., Østergaard, Vibe Hallundbæk, Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 17 p., 1541.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published

    A pragmatic approach for integrating molecular tools into biodiversity conservation

    Bertola, L. D., Brüniche-Olsen, A., Kershaw, F., Russo, I. R. M., MacDonald, A. J., Sunnucks, P., Bruford, M. W., Cadena, C. D., Ewart, K. M., de Bruyn, M., Eldridge, M. D. B., Frankham, R., Guayasamin, J. M., Grueber, C. E., Hoareau, T. B., Hoban, S., Hohenlohe, P. A., Hunter, M. E., Kotze, A., Kuja, J. & 21 others, Lacy, R. C., Laikre, L., Lo, N., Meek, M. H., Mergeay, J., Mittan-Moreau, C., Neaves, L. E., O'Brien, D., Ochieng, J. W., Ogden, R., Orozco-terWengel, P., Páez-Vacas, M., Pierson, J., Ralls, K., Shaw, R. E., Sogbohossou, E. A., Stow, A., Steeves, T., Vernesi, C., Watsa, M. & Segelbacher, G., 2024, In: Conservation Science and Practice. 6, 1, 15 p., e13053.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    AI Implementation and Capability Development in Manufacturing: An Action Research Case

    Eklöf, Jon, Snis, U. L., Hamelryck, Thomas Wim, Grima, A. & Rønning, Ola, 2024, Proceedings of the 57th Hawaii International Conference on System Sciences - HICSS 2024. Hawaii International Conference on System Sciences, 10 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  8. Published

    Acclimation of subarctic vegetation to warming and increased cloudiness

    Ndah, F. A., Maljanen, M., Kasurinen, A., Rinnan, Riikka, Michelsen, Anders, Kotilainen, T. & Kivimäenpää, M., 2024, In: Plant-Environment Interactions. 5, 1, 16 p., e10130.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Accounting for Winter Warming Events in the Ecosystem Model LPJ-GUESS: Evaluation and Outlook

    Pascual, D., Johansson, M., Pongracz, A. & Tang, Jing, 2024, In: Journal of Geophysical Research: Biogeosciences. 129, 3, 13 p., e2023JG007464.

    Research output: Contribution to journalJournal articlepeer-review

  10. E-pub ahead of print

    Acid–base transporters in the context of tumor heterogeneity

    Pedersen, Stine Helene Falsig, 2024, (E-pub ahead of print) In: Pflugers Archiv European Journal of Physiology.

    Research output: Contribution to journalReviewpeer-review

  11. Published

    African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

    Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, Lin, Long, Wang, X., Heaton, M. P., Smith, T. P. L., Hanghøj, Kristian Ebbesen, Sinding, Mikkel Holger Strander, Atickem, A., Chikhi, L., Roos, C., Gaubert, P., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 15 p., 172.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    An Exploration of Artificial Intelligence-Driven De Novo Peptide Sequencing: Towards Future Proteomics and Medicine

    Chang, Yuqi, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/ReportPh.D. thesis

  13. Published

    Analysis of Genomic and Transcriptomic Signatures Associated with Amyotrophic Lateral Sclerosis

    Guan, Liping, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/ReportPh.D. thesis

  14. Published
  15. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  17. E-pub ahead of print

    BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum

    Leader, D. P., Naseem, Muhammad Tayyib & Halberg, Kenneth Veland, 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 168520.

    Research output: Contribution to journalJournal articlepeer-review

  18. Published

    BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis

    Gíslason, M. H., Demircan, G. S., Prachar, Marek, Furtwängler, Benjamin, Schwaller, J., Schoof, E., Porse, Bo Torben, Rapin, N. & Bagger, F., 2024, In: Nucleic acids symposium series. 52, D1, p. D1138–D1142 5 p.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages

    Varming, A. K., Huang, Zhiyu, Hamad, G. M., Rasmussen, K. K., Ingmer, Hanne, Kilstrup, M. & Lo Leggio, Leila, 2024, In: Microbiome Research Reports. 3, 2, 16 p., 15.

    Research output: Contribution to journalJournal articlepeer-review

  20. Published

    Cadmium accumulation in organisms from a spruce plantation amended with wood ash - an environmental risk?

    Ekelund, Flemming, Cruz-Paredes, C., Jørgensen, Christian Hviid Friis, Vestergård, M., Rasmussen, K. R., Mortensen, Louise Hindborg, Kindtler, Nikolaj Lunding, Rønn, R., Christensen, Søren, Johansen, Jesper Liengaard & Kjøller, Rasmus, 2024, In: Trees, Forests and People. 15, 6 p., 100499.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Calls of the little auk (Alle alle) chicks reflect their behavioural contexts

    Osiecka, A. N., Briefer, Elodie, Kidawa, D., Żurawska, F. & Wojczulanis-Jakubas, K., 2024, In: PLoS ONE. 19, 2, 14 p., e0299033.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published

    Can large language models reason about medical questions?

    Liévin, V., Hother, C. E., Motzfeldt, A. G. & Winther, Ole, 2024, In: Patterns. 5, 3, 12 p., 100943.

    Research output: Contribution to journalJournal articlepeer-review

  23. Published

    Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination

    Hansen, A. L., Theisen, Frederik Friis, Crehuet, R., Marcos, E., Aghajari, N. & Willemoës, Martin, 2024, In: ACS Synthetic Biology. 13, 3, p. 862-875 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  24. Published

    Changes in composition and function of soil microbial communities during secondary succession in oldfields on the Tibetan Plateau

    Ma, Hui, Yan, X., Gao, E., Qiu, Y., Sun, X., Wang, S., Wang, Y., Bruun, Hans Henrik, He, Z., Shi, X. & Zhao, Z., 2024, In: Plant and Soil. 495, p. 429–443 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs

    Olsen, Johan Gotthardt, Prestel, Andreas, Kassem, N., Broendum, S. S., Hossain, Mohammad Shamim, Simonsen, Signe, Grysbæk, M., Mortensen, J., Rytkjær, L. L., Haxholm, G. W., Marabini, R., Holmberg, Christian, Carr, A. M., Crehuet, R., Nielsen, Olaf & Kragelund, Birthe Brandt, 2024, In: Nucleic acids symposium series. 52, 4, p. 2030–2044 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Circle-seq based method for eccDNA synthesis and its application as a canonical promoter independent vector for robust microRNA overexpression

    Yu, J., Zhang, H., Han, Peng, Jiang, X., Li, J., Li, B., Yang, S., He, C., Mao, S., Dang, Y. & Xiang, X., 2024, In: Computational and Structural Biotechnology Journal. 23, p. 358-368 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  27. Published

    Comment on “DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction”

    Vinther, Jeppe, 2024, In: Analytical Chemistry. 96, 1, p. 606-609 4 p.

    Research output: Contribution to journalComment/debatepeer-review

  28. Published

    Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly

    Hu, T., Chen, J., Lin, X., He, W., Liang, H., Wang, M., Li, W., Wu, Z., Han, Mo, Jin, X., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: Scientific Reports. 14, 1, 9 p., 1292.

    Research output: Contribution to journalJournal articlepeer-review

  29. Published

    Conformational ensembles of the human intrinsically disordered proteome

    Tesei, Giulio, Trolle, A. I., Jonsson, Nicolas, Betz, J., Knudsen, F. E., Pesce, Francesco, Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2024, In: Nature. 626, p. 897-904 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  30. Published

    Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements

    Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.

    Research output: Book/ReportPh.D. thesis

  31. Published

    Cytotoxicity of Prymnesium parvum extracts and prymnesin analogs on epithelial fish gill cells RTgill‑W1 and the human colon cell line HCEC‑1CT

    Varga, E., Prause, H., Riepl, M., Hochmayr, N., Berk, D., Attakpah, E., Kiss, E., Medic, Nikola, Del Favero, G., Larsen, T. O., Hansen, Per Juel & Marko, D., 2024, In: Archives of Toxicology. 98, p. 999–1014 16 p.

    Research output: Contribution to journalJournal articlepeer-review

  32. Published

    DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

    Bjarnason, S., McIvor, J. A. P., Prestel, Andreas, Demény, K. S., Bullerjahn, J. T., Kragelund, Birthe Brandt, Mercadante, D. & Heidarsson, P. O., 2024, In: Nature Communications. 15, 1, 16 p., 1445.

    Research output: Contribution to journalJournal articlepeer-review

  33. Published

    DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity

    Lourenço, L., Ellegaard Bager, S., Ng, D. Y. K., Sheikh, Sanea, Kindtler, Nikolaj Lunding, Nielsen, Ida Broman, Frøslev, Tobias Guldberg & Ekelund, Flemming, 2024, In: Protist. 175, 2, 9 p., 126016.

    Research output: Contribution to journalJournal articlepeer-review

  34. E-pub ahead of print

    Deciphering unique and shared interactions between the human gut microbiota and oral antidiabetic drugs

    Ren, H., Shi, Z., Yang, F., Wang, S., Yuan, F., Li, T., Li, M., Zhu, J., Li, J., Wu, K., Zhang, Y., Ning, G., Kristiansen, Karsten, Wang, W., Gu, Y. & Zhong, H., 2024, (E-pub ahead of print) In: iMeta. e179.

    Research output: Contribution to journalComment/debatepeer-review

  35. Published

    DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning

    Wang, Jun, Horlacher, M., Cheng, L. & Winther, Ole, 2024, In: Bioinformatics. 40, 2, 10 p., btae065.

    Research output: Contribution to journalJournal articlepeer-review

  36. Published

    DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations

    Høie, M. H., Gade, F. S., Johansen, J., Würtzen, C., Winther, Ole, Nielsen, M. & Marcatili, P., 2024, In: Frontiers in Immunology. 15, 12 p., 1322712.

    Research output: Contribution to journalJournal articlepeer-review

  37. E-pub ahead of print

    Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen‐fixing cyanobacterium Crocosphaera

    Filella, A., Umbricht, J., Klett, A., Vogts, A., Vannier, T., Grosso, O., Voss, M., Riemann, Lasse & Benavides, M., 2024, (E-pub ahead of print) In: Limnology and Oceanography Letters.

    Research output: Contribution to journalJournal articlepeer-review

  38. Published

    Drosophila activins adapt gut size to food intake and promote regenerative growth

    Christensen, C. F., Laurichesse, Quentin Charles B, Loudhaief, Rihab, Colombani, Julien & Andersen, Ditte Skovaa, 2024, In: Nature Communications. 15, 1, 12 p., 273.

    Research output: Contribution to journalJournal articlepeer-review

  39. Published

    Dynamics of inflammation-associated plasma proteins following faecal microbiota transplantation in patients with psoriatic arthritis and healthy controls: exploratory findings from the FLORA trial [Inkl. Correction]

    Kragsnaes, M. S., Jensen, J. R. B., Nilsson, A. C., Malik, M. I., Munk, H. L., Pedersen, J. K., Horn, H. C., Kruhøffer, M., Kristiansen, Karsten, Mullish, B. H., Marchesi, J. R., Kjeldsen, J., Röttger, R. & Ellingsen, T., 2024, In: RMD Open. 10, 1, 13 p., e003750.

    Research output: Contribution to journalJournal articlepeer-review

  40. Published

    Editorial: Microbial fermentation for improved sensory properties and functionality of sustainable foods

    Verni, M., Holt, Sylvester & Rizzello, C. G., 2024, In: Frontiers in Microbiology. 15, 2 p., 1387745.

    Research output: Contribution to journalEditorialpeer-review

  41. Published

    Editorial overview: New and revitalized old targets in metabolic disease

    Hansen, Jacob B. & Novak, Ivana, 2024, In: Current Opinion in Pharmacology. 75, 3 p., 102434.

    Research output: Contribution to journalEditorialpeer-review

  42. Published

    Editorial: Optics and ecophysiology of coral reef organisms: volume II

    Bollati, Elena, Wangpraseurt, D., Larkum, A. W. D., Ferrier-Pagès, C. & Kühl, Michael, 2024, In: Frontiers in Marine Science. 11, 3 p., 1367849.

    Research output: Contribution to journalEditorialpeer-review

  43. Published

    Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya

    Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.

    Research output: Contribution to journalJournal articlepeer-review

  44. Published

    Efficient statistical and computational methods for large scale sequencing data

    Li, Zilong, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/ReportDoctoral thesis

  45. Published

    Endogenous Tagging of Ciliary Genes in Human RPE1 Cells for Live-Cell Imaging

    Kuhns, S., Juhl, A. D., Anvarian, Zeinab, Wüstner, D., Pedersen, Lotte Bang & Andersen, J. S., 2024, Methods in Molecular Biology. Humana Press, p. 147-166 20 p. (Methods in Molecular Biology, Vol. 2725).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  46. Published

    Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark

    Pust, F. L., Frøslev, Tobias Guldberg, Kristensen, Reinhardt Møbjerg & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 20-33

    Research output: Contribution to journalJournal articlepeer-review

  47. Published
  48. Published

    FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries

    Montepietra, D., Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Best, R. B. & Lindorff-Larsen, Kresten, 2024, In: Communications Biology . 7, 1, 10 p., 298.

    Research output: Contribution to journalJournal articlepeer-review

  49. Published

    Facing Danger: Exploring Personality and Reactions of European Hedgehogs (Erinaceus europaeus) towards Robotic Lawn Mowers

    Rasmussen, S. L., Schrøder, B. T., Berger, A., Macdonald, D. W., Pertoldi, C., Briefer, Elodie & Alstrup, A. K. O., 2024, In: Animals. 14, 1, 19 p., 2.

    Research output: Contribution to journalJournal articlepeer-review

  50. Published

    Fine roots and extramatrical mycelia regulate the composition of soil organic carbon and nitrogen in a subtropical montane forest

    Zhao, X., Tian, Q., Michelsen, Anders, Chen, L., Yue, P., Feng, Z., Lin, Q., Zhao, R. & Liu, F., 2024, In: Forest Ecology and Management. 554, 8 p., 121661.

    Research output: Contribution to journalJournal articlepeer-review

  51. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journalJournal articlepeer-review

  52. Published

    Flooding-adaptive root and shoot traits in rice

    Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.

    Research output: Contribution to journalJournal articlepeer-review

  53. Published

    Frost damage measured by electrolyte leakage in subarctic bryophytes increases with climate warming

    van Zuijlen, K., Kassel, M., Dorrepaal, E. & Lett, Signe, 2024, In: Journal of Ecology. 112, 2, p. 220-232 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  54. Published

    Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking

    Chio, U. S., Palovcak, E., Smith, A. A. A., Autzen, Henriette Elisabeth, Muñoz, E. N., Yu, Z., Wang, F., Agard, D. A., Armache, J. P., Narlikar, G. J. & Cheng, Y., 2024, In: Nature Communications. 15, 1, 12 p., 2225.

    Research output: Contribution to journalJournal articlepeer-review

  55. Published

    GLP-1 metabolite GLP-1(9–36) is a systemic inhibitor of mouse and human pancreatic islet glucagon secretion

    Gandasi, N. R., Gao, R., Kothegala, L., Pearce, A., Santos, C., Acreman, S., Basco, D., Benrick, A., Chibalina, M. V., Clark, A., Guida, C., Harris, M., Johnson, P. R. V., Knudsen, J. G., Ma, J., Miranda, C., Shigeto, M., Tarasov, A. I., Yeung, H. Y., Thorens, B. & 5 others, Asterholm, I. W., Zhang, Q., Ramracheya, R., Ladds, G. & Rorsman, P., 2024, In: Diabetologia. 67, p. 528–546 19 p.

    Research output: Contribution to journalJournal articlepeer-review

  56. Published

    GWAS of lipids in Greenlanders finds association signals shared with Europeans and reveals an independent PCSK9 association signal

    Senftleber, N. K., Andersen, M. K., Jørsboe, E., Stæger, Frederik Filip Vinggaard, Nøhr, A. K., Garcia Erill, Genís, Meisner, Jonas, Santander, Cindy Gilda, Balboa, Renzo Fidel Ferdinando, Gilly, A., Bjerregaard, P., Larsen, C. V. L., Grarup, Niels, Jørgensen, M. E., Zeggini, E., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2024, In: European Journal of Human Genetics. 32, p. 215–223 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  57. Published

    Genomic and functional diversity of cultivated Bifidobacterium from human gut microbiota

    Li, W., Liang, H., He, W., Gao, X., Wu, Z., Hu, T., Lin, X., Wang, M., Zhong, Y., Zhang, H., Ge, L., Jin, X., Xiao, L. & Zou, Y., 2024, In: Heliyon. 10, 5, 14 p., e27270.

    Research output: Contribution to journalJournal articlepeer-review

  58. Published

    Global N2O emissions from our planet: Which fluxes are affected by man, and can we reduce these?

    Christensen, Søren & Rousk, Kathrin, 2024, In: iScience. 27, 2, 10 p., 109042.

    Research output: Contribution to journalReviewpeer-review

  59. Published

    Going through changes - the role of autophagy during reprogramming and differentiation

    Petersen, Morten, Ebstrup, E. & Rodriguez, Eleazar, 2024, In: Journal of Cell Science. 137, 4, 10 p., jcs261655.

    Research output: Contribution to journalReviewpeer-review

  60. Published

    Gut microbiota signatures in inflammatory bowel disease

    Vestergaard, M. V., Allin, K. H., Eriksen, C., Zakerska-Banaszak, O., Arasaradnam, R. P., Alam, M. T., Kristiansen, Karsten, Brix, S. & Jess, T., 2024, In: United European Gastroenterology Journal. 12, 1, p. 22-33 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  61. Published

    Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass

    Zhang, Z., Zhang, S. & Rinnan, Riikka, 2024, In: Applied Soil Ecology. 194, 10 p., 105203.

    Research output: Contribution to journalJournal articlepeer-review

  62. Published

    High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator

    Popovic, I., Bergeron, Lucie Adrienne, Bozec, Y. M., Waldvogel, A. M., Howitt, S. M., Damjanovic, K., Patel, F., Cabrera, M. G., Wörheide, G., Uthicke, S. & Riginos, C., 2024, In: PLOS Genetics. 20, 2, 22 p., e1011129.

    Research output: Contribution to journalJournal articlepeer-review

  63. E-pub ahead of print

    Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.

    Research output: Contribution to journalJournal articlepeer-review

  64. Published

    Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

    Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

    Research output: Contribution to journalJournal articlepeer-review

  65. Published

    Hourly methane and carbon dioxide fluxes from temperate ponds

    Sø, Jonas Stage, Martinsen, Kenneth Thorø, Kragh, T. & Sand-Jensen, Kaj, 2024, In: Biogeochemistry. 167, p. 177-195 19 p.

    Research output: Contribution to journalJournal articlepeer-review

  66. Published

    Identification of constrained sequence elements across 239 primate genomes

    Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J. & 72 others, Rouselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Karakikes, I., Wang, K. C., Umapathy, G., Roos, C., Boubli, J. P., Siepel, A., Kundaje, A., Paten, B., Lindblad-Toh, K., Rogers, J., Marques Bonet, T. & Farh, K. K. H., 2024, In: Nature. 625, p. 735–742 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  67. Published

    Imaging of extracellular and intracellular ATP in pancreatic beta cells reveals correlation between glucose metabolism and purinergic signalling

    Ghiasi, S. M., Christensen, Nynne, Pedersen, Per Amstrup, Skovhøj, Emil Zeng & Novak, Ivana, 2024, In: Cellular Signalling. 117, 12 p., 111109.

    Research output: Contribution to journalJournal articlepeer-review

  68. Published

    Impact of salinity and temperature on the vital rates of co-occurring Calanus glacialis and C. finmarchicus from West Greenland

    Makri, M., Hansen, Per Juel & Gissel Nielsen, T., 2024, In: Marine Ecology - Progress Series. 729, p. 47-62 16 p.

    Research output: Contribution to journalJournal articlepeer-review

  69. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journalJournal articlepeer-review

  70. Published

    Integrating coarse-grained molecular dynamics simulations with small-angle X-ray scattering data to characterize multidomain proteins and their assemblies

    Thomasen, Emil, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/ReportPh.D. thesis

  71. Published

    Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study

    Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  72. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, X., Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  73. Published

    Intra-colony spatial variance of oxyregulation and hypoxic thresholds for key Acropora coral species

    Dilernia, N. J., Woodcock, S., Camp, E. F., Hughes, D. J., Kühl, Michael & Suggett, D. J., 2024, In: Ecology and Evolution. 14, 3, 16 p., e11100.

    Research output: Contribution to journalJournal articlepeer-review

  74. Published

    Investigations on Microbes Attached to the Cuticle of Phytonematodes

    Topalovic, Olivera, Radaković, Z. S., Elhady, A., Bredenbruch, S. & Heuer, H., 2024, Plant-Nematode Interactions. Molinari, S. (ed.). Vol. 2756. p. 257-270 14 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  75. Published

    Isochrony in barks of Cape fur seal (Arctocephalus pusillus pusillus) pups and adults

    Osiecka, A. N., Fearey, J., Ravignani, A. & Burchardt, L. S., 2024, In: Ecology and Evolution. 14, 3, 11 p., e11085.

    Research output: Contribution to journalJournal articlepeer-review

  76. Published

    JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

    Rauluseviciute, I., Riudavets-puig, R., Blanc-mathieu, R., Castro-mondragon, J., Ferenc, K., Kumar, V., Lemma, R. B., Lucas, J., Chèneby, J., Baranasic, D., Khan, A., Fornes, O., Gundersen, S., Johansen, M., Hovig, E., Lenhard, B., Sandelin, Albin Gustav, Wasserman, W., Parcy, F. & Mathelier, A., 2024, In: Nucleic Acids Symposium Series. 52, D1, p. D174–D182 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  77. Published

    Lipid shape and packing are key for optimal design of pH-sensitive mRNA lipid nanoparticles

    Tesei, Giulio, Hsiao, Y. W., Dabkowska, A., Grönberg, G., Yanez Arteta, M., Ulkoski, D., Bray, D. J., Trulsson, M., Ulander, J., Lund, M. & Lindfors, L., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 2, 11 p., e2311700120.

    Research output: Contribution to journalJournal articlepeer-review

  78. Published

    Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum

    Jian, J., Wu, Z., Silva-núñez, A., Li, X., Zheng, X., Luo, B., Liu, Y., Fang, X., Workman, C. T., Larsen, T. O., Hansen, Per Juel & Sonnenschein, E. C., 2024, In: Science of the Total Environment. 908, 168042.

    Research output: Contribution to journalJournal articlepeer-review

  79. Published
  80. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journalJournal articlepeer-review

  81. Published

    Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

    Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  82. E-pub ahead of print

    MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch

    Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, (E-pub ahead of print) In: Nature Genetics.

    Research output: Contribution to journalJournal articlepeer-review

  83. Published

    Mechanisms of Systemic Osmoregulation in Insects

    Halberg, Kenneth Veland & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

    Research output: Contribution to journalReviewpeer-review

  84. Published

    Meta‐analysis Contrasting Freshwater Biodiversity in Forests and Oil Palm Plantations with and without Riparian Buffers

    Rojas‐Castillo, O. A., Kepfer Rojas, Sebastian, Juen, L., Fogaça De Assis Montag, L., Carvalho, F. G., Mendes, T. P., Chua, K. W. J., Wilkinson, C. L., Amal, M. N. A., Fahmi‐Ahmad, M. & Jacobsen, Dean, 2024, In: Conservation Biology. 38, 1, 14 p., e14172.

    Research output: Contribution to journalReviewpeer-review

  85. Published

    Microbial Symbiont Contributions to Fungus-Farming Termite Health and Disease

    Murphy, Rob, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 317 p.

    Research output: Book/ReportPh.D. thesis

  86. Published

    Microbial community composition unaffected by mycorrhizal plant removal in sub-arctic tundra

    Kirchhoff, L., Gavazov, K., Blume-Werry, G., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering, Peter, M., Pfister, S., Väisänen, M. & Monteux, S., 2024, In: Fungal Ecology. 69, 11 p., 101342.

    Research output: Contribution to journalJournal articlepeer-review

  87. Published

    Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity

    Raju, S. C., Molinaro, A., Awoyemi, A., Jørgensen, S. F., Braadland, P. R., Nendl, A., Seljeflot, I., Ueland, P. M., McCann, A., Aukrust, P., Vestad, B., Mayerhofer, C., Broch, K., Gullestad, L., Lappegård, K. T., Halvorsen, B., Kristiansen, Karsten, Hov, J. R. & Trøseid, M., 2024, In: Genome Medicine. 16, 1, 12 p., 27.

    Research output: Contribution to journalJournal articlepeer-review

  88. Published

    Molecular switching in transcription through splicing and proline-isomerization regulates stress responses in plants

    Theisen, Frederik Friis, Prestel, Andreas, Elkjær, Steffie Martina H, Leurs, Y. H. A., Morffy, N., Strader, L. C., O'Shea, Charlotte, Teilum, Kaare, Kragelund, Birthe Brandt & Skriver, Karen, 2024, In: Nature Communications. 15, 1, 13 p., 592.

    Research output: Contribution to journalJournal articlepeer-review

  89. Published

    Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts

    Pearman, P. B., Broennimann, O., Aavik, T., Albayrak, T., Alves, P. C., Aravanopoulos, F. A., Bertola, L. D., Biedrzycka, A., Buzan, E., Cubric-Curik, V., Djan, M., Fedorca, A., Fuentes-Pardo, A. P., Fussi, B., Godoy, J. A., Gugerli, F., Hoban, S., Holderegger, R., Hvilsom, C., Iacolina, L. & 32 others, Kalamujic Stroil, B., Klinga, P., Konopiński, M. K., Kopatz, A., Laikre, L., Lopes-Fernandes, M., McMahon, B. J., Mergeay, J., Neophytou, C., Pálsson, S., Paz-Vinas, I., Posledovich, D., Primmer, C. R., Raeymaekers, J. A. M., Rinkevich, B., Rolečková, B., Ruņģis, D., Schuerz, L., Segelbacher, G., Kavčič Sonnenschein, K., Stefanovic, M., Thurfjell, H., Träger, S., Tsvetkov, I. N., Velickovic, N., Vergeer, P., Vernesi, C., Vilà, C., Westergren, M., Zachos, F. E., Guisan, A. & Bruford, M., 2024, In: Nature Ecology and Evolution. 8, p. 267–281 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  90. Published

    Myotubularin-related-protein-7 inhibits mutant (G12V) K-RAS by direct interaction

    Weidner, P., Saar, D., Söhn, M., Schroeder, T., Yu, Y., Zöllner, F. G., Ponelies, N., Zhou, X., Zwicky, A., Rohrbacher, F. N., Pattabiraman, V. R., Tanriver, M., Bauer, A., Ahmed, H., Ametamey, S. M., Riffel, P., Seger, R., Bode, J. W., Wade, R. C., Ebert, M. P. A. & 2 others, Kragelund, Birthe Brandt & Burgermeister, E., 2024, In: Cancer Letters. 588, 19 p., 216783.

    Research output: Contribution to journalJournal articlepeer-review

  91. Published

    Nature Forest Reserves in Tanzania and their importance for conservation

    Ract, C., Burgess, Neil David, Dinesen, Lars, Sumbi, P., Malugu, I., Latham, J., Anderson, L., Gereau, R. E., de Lima, M. G., Akida, A., Nashanda, E., Shabani, Z., Tango, Y., Mteleka, S., Silayo, D. S., Mwangi, J., Lyatuu, G., Platts, P. J. & Rovero, F., 2024, In: PLoS ONE. 19, 2, 15 p., e0281408.

    Research output: Contribution to journalJournal articlepeer-review

  92. Published

    New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system

    Bittner, Meriel Jennifer, Bannon, C. C., Rowland, E., Sundh, J., Bertrand, E. M., Andersson, A. F., Paerl, R. W. & Riemann, Lasse, 2024, In: ISME communications. 4, 1, 16 p., ycad016.

    Research output: Contribution to journalJournal articlepeer-review

  93. Published

    Nitrogen immobilization could link extreme winter warming events to Arctic browning

    Rasmussen, Laura Helene, Danielsen, Birgitte Kortegaard, Elberling, Bo, Ambus, Per Lennart, Björkman, M. P., Rinnan, Riikka & Andresen, L. C., 2024, In: Soil Biology and Biochemistry. 191, 11 p., 109319.

    Research output: Contribution to journalJournal articlepeer-review

  94. Published

    Nitrogen uptake in lentil cultivar mixtures is not predictable from pure stands performance but is correlated with agronomic parameters and experimental conditions

    Lorenzetti, E., Carlesi, S., Michelsen, Anders & Bàrberi, P., 2024, In: Agriculture and Food Security. 13, 1, 13 p., 11.

    Research output: Contribution to journalJournal articlepeer-review

  95. Published

    Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

    Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  96. Published

    Osmotic stress tolerance and transcriptomic response of Ramazzottius varieornatus (Eutardigrada: Ramazzottiidae) following tun formation

    Emdee, N., Møbjerg, A., Grollmann, M. M. & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 220-229 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  97. E-pub ahead of print

    Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

    Jimenez Serna, Juan de la Cruz, Armstrong, W., Colmer, T. D. & Pedersen, Ole, 2024, (E-pub ahead of print) In: Plant Physiology. kiae046.

    Research output: Contribution to journalComment/debatepeer-review

  98. Published

    PICH deficiency limits the progression of MYC-induced B-cell lymphoma

    Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

    Research output: Contribution to journalJournal articlepeer-review

  99. Published

    PPARγ antagonists induce aromatase transcription in adipose tissue cultures

    Ardenkjær-Skinnerup, J., Saar, Daniel, Petersen, Patricia Stephanie S, Pedersen, M., Svingen, T., Kragelund, Birthe Brandt, Hadrup, N., Ravn-Haren, G., Emanuelli, Brice, Brown, K. A. & Vogel, U., 2024, In: Biochemical Pharmacology. 222, 13 p., 116095.

    Research output: Contribution to journalJournal articlepeer-review

  100. Published

    Phytoplankton community changes in relation to nutrient fluxes along a quasi-stationary front

    Bendtsen, Jørgen, Daugbjerg, Niels, Jensen, R. S., dbt998, dbt998, Nielsen, M. H., Hansen, J. L. S. & Richardson, Katherine, 2024, In: Marine Ecology - Progress Series. 727, p. 67-80 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  101. Published

    Phytoremediation in the Guadiamar Green Corridor (SW Spain): Trace element uptake by plants and effects on soil fungal diversity

    Madejón, P., Domínguez, M. T., Gil-Martínez, M. & Madejón, E., 2024, In: Advances in Botanical Research. 109, p. 255-294 40 p.

    Research output: Contribution to journalJournal articlepeer-review

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