Department of Biology

 

 
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  1. 2024
  2. Published

    Editorial: Microbial fermentation for improved sensory properties and functionality of sustainable foods

    Verni, M., Holt, Sylvester & Rizzello, C. G., 2024, In: Frontiers in Microbiology. 15, 2 p., 1387745.

    Research output: Contribution to journal › Editorial › Research › peer-review

  3. Published

    Editorial overview: New and revitalized old targets in metabolic disease

    Hansen, Jacob B. & Novak, Ivana, 2024, In: Current Opinion in Pharmacology. 75, 3 p., 102434.

    Research output: Contribution to journal › Editorial › Research › peer-review

  4. Published

    Editorial: Optics and ecophysiology of coral reef organisms: volume II

    Bollati, Elena, Wangpraseurt, D., Larkum, A. W. D., Ferrier-Pagès, C. & Kühl, Michael, 2024, In: Frontiers in Marine Science. 11, 3 p., 1367849.

    Research output: Contribution to journal › Editorial › Research › peer-review

  5. Published

    Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya

    Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Efficient statistical and computational methods for large scale sequencing data

    Li, Zilong, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/Report › Doctoral thesis › Research

  7. Published

    Endogenous Tagging of Ciliary Genes in Human RPE1 Cells for Live-Cell Imaging

    Kuhns, S., Juhl, A. D., Anvarian, Zeinab, Wüstner, D., Pedersen, Lotte Bang & Andersen, J. S., 2024, Methods in Molecular Biology. Humana Press, p. 147-166 20 p. (Methods in Molecular Biology, Vol. 2725).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark

    Pust, F. L., Frøslev, Tobias Guldberg, Kristensen, Reinhardt Møbjerg & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 20-33

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Evidence of steady-state fibroblast subtypes in the normal human breast as cells-of-origin for perturbed-state fibroblasts in breast cancer

    Bagger, M. M., Sjölund, J., Kim, Jiyoung, Kohler, Katharina Theresa, Villadsen, René, Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Pietras, K., Rønnov-Jessen, Lone & Petersen, Ole William, 2024, In: Breast Cancer Research. 26, 1, 19 p., 11.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. E-pub ahead of print

    Eyes, Vision, and Bioluminescence in Deep-Sea Brisingid Sea Stars

    Garm, Anders Lydik, Hamilton, O., Glenner, Henrik, Irwin, Alison Ruth & Mah, C., 2024, (E-pub ahead of print) In: Biological Bulletin.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries

    Montepietra, D., Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Best, R. B. & Lindorff-Larsen, Kresten, 2024, In: Communications Biology . 7, 1, 10 p., 298.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Facing Danger: Exploring Personality and Reactions of European Hedgehogs (Erinaceus europaeus) towards Robotic Lawn Mowers

    Rasmussen, S. L., Schrøder, B. T., Berger, A., Macdonald, D. W., Pertoldi, C., Briefer, Elodie & Alstrup, A. K. O., 2024, In: Animals. 14, 1, 19 p., 2.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Fertilizer regime and cultivar affect barley growth and rhizobiome composition

    Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Fine roots and extramatrical mycelia regulate the composition of soil organic carbon and nitrogen in a subtropical montane forest

    Zhao, X., Tian, Q., Michelsen, Anders, Chen, L., Yue, P., Feng, Z., Lin, Q., Zhao, R. & Liu, F., 2024, In: Forest Ecology and Management. 554, 8 p., 121661.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Flooding stress and responses to hypoxia in plants

    Jimenez Serna, Juan de la Cruz, Mustroph, A., Pedersen, Ole, Weits, D. A. & Schmidt-schippers, R., 2024, In: Functional Plant Biology. 51, 4, 5 p., FP24061.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Flooding-adaptive root and shoot traits in rice

    Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Frost damage measured by electrolyte leakage in subarctic bryophytes increases with climate warming

    van Zuijlen, K., Kassel, M., Dorrepaal, E. & Lett, Signe, 2024, In: Journal of Ecology. 112, 2, p. 220-232 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Function and induction of the root barrier to radial O2 loss. A commentary on ‘Exogenous abscisic acid induces the formation of a suberized barrier to radial oxygen loss in adventitious roots of barley (Hordeum vulgare)’

    Pedersen, Ole & Jimenez Serna, Juan de la Cruz, 2024, In: Annals of Botany.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  20. Published

    Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking

    Chio, U. S., Palovcak, E., Smith, A. A. A., Autzen, Henriette Elisabeth, Muñoz, E. N., Yu, Z., Wang, F., Agard, D. A., Armache, J. P., Narlikar, G. J. & Cheng, Y., 2024, In: Nature Communications. 15, 1, 12 p., 2225.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    GLP-1 metabolite GLP-1(9–36) is a systemic inhibitor of mouse and human pancreatic islet glucagon secretion

    Gandasi, N. R., Gao, R., Kothegala, L., Pearce, A., Santos, C., Acreman, S., Basco, D., Benrick, A., Chibalina, M. V., Clark, A., Guida, C., Harris, M., Johnson, P. R. V., Knudsen, J. G., Ma, J., Miranda, C., Shigeto, M., Tarasov, A. I., Yeung, H. Y., Thorens, B. & 5 others, Asterholm, I. W., Zhang, Q., Ramracheya, R., Ladds, G. & Rorsman, P., 2024, In: Diabetologia. 67, p. 528–546 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    GWAS of lipids in Greenlanders finds association signals shared with Europeans and reveals an independent PCSK9 association signal

    Senftleber, N. K., Andersen, M. K., Jørsboe, E., Stæger, Frederik Filip Vinggaard, Nøhr, A. K., Garcia Erill, Genís, Meisner, Jonas, Santander, Cindy Gilda, Balboa, Renzo Fidel Ferdinando, Gilly, A., Bjerregaard, P., Larsen, C. V. L., Grarup, Niels, Jørgensen, M. E., Zeggini, E., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2024, In: European Journal of Human Genetics. 32, p. 215–223 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions

    Chege, M., Sewalt, B., Lesilau, F., de Snoo, G., Patterson, B. D., Kariuki, L., Otiende, M., Omondi, P., de Iongh, H., Vrieling, K. & Bertola, Laura, 2024, In: Evolutionary Applications. 17, 3, 14 p., e13676.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Genomic and functional diversity of cultivated Bifidobacterium from human gut microbiota

    Li, W., Liang, H., He, W., Gao, X., Wu, Z., Hu, T., Lin, X., Wang, M., Zhong, Y., Zhang, H., Ge, L., Jin, X., Xiao, L. & Zou, Y., 2024, In: Heliyon. 10, 5, 14 p., e27270.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Giraffe lineages are shaped by major ancient admixture events

    Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, Sinding, Mikkel Holger Strander, Muwanika, V., Masembe, C., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Global N2O emissions from our planet: Which fluxes are affected by man, and can we reduce these?

    Christensen, Søren & Rousk, Kathrin, 2024, In: iScience. 27, 2, 10 p., 109042.

    Research output: Contribution to journal › Review › Research › peer-review

  27. Published

    Going through changes - the role of autophagy during reprogramming and differentiation

    Petersen, Morten, Ebstrup, E. & Rodriguez, Eleazar, 2024, In: Journal of Cell Science. 137, 4, 10 p., jcs261655.

    Research output: Contribution to journal › Review › Research › peer-review

  28. Published

    Gut microbiota signatures in inflammatory bowel disease

    Vestergaard, M. V., Allin, K. H., Eriksen, C., Zakerska-Banaszak, O., Arasaradnam, R. P., Alam, M. T., Kristiansen, Karsten, Brix, S. & Jess, T., 2024, In: United European Gastroenterology Journal. 12, 1, p. 22-33 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass

    Zhang, Z., Zhang, S. & Rinnan, Riikka, 2024, In: Applied Soil Ecology. 194, 10 p., 105203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator

    Popovic, I., Bergeron, Lucie Adrienne, Bozec, Y. M., Waldvogel, A. M., Howitt, S. M., Damjanovic, K., Patel, F., Cabrera, M. G., Wörheide, G., Uthicke, S. & Riginos, C., 2024, In: PLOS Genetics. 20, 2, 22 p., e1011129.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    High-resolution vision in pelagic polychaetes

    Bok, M. J., Macali, A. & Garm, Anders Lydik, 2024, In: Current Biology. 34, 7, p. R269-R270 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  32. E-pub ahead of print

    Home-field advantage of litter decomposition differs among leaves, absorptive roots, and transport roots

    Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Yuan, X., Chen, L., Lu, M., Jiang, Q., Zhao, R. & Liu, F., 2024, (E-pub ahead of print) In: Plant and Soil.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

    Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Hourly methane and carbon dioxide fluxes from temperate ponds

    Sø, Jonas Stage, Martinsen, Kenneth Thorø, Kragh, T. & Sand-Jensen, Kaj, 2024, In: Biogeochemistry. 167, p. 177-195 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. E-pub ahead of print

    Hypoxia in tomato (Solanum lycopersicum) fruit during ripening: Biophysical elucidation by a 3D reaction–diffusion model

    Xiao, H., Verboven, P., Tong, Shuai, Pedersen, Ole & Nicolaï, B., 2024, (E-pub ahead of print) In: Plant Physiology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Identification of constrained sequence elements across 239 primate genomes

    Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J. & 72 others, Rouselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Karakikes, I., Wang, K. C., Umapathy, G., Roos, C., Boubli, J. P., Siepel, A., Kundaje, A., Paten, B., Lindblad-Toh, K., Rogers, J., Marques Bonet, T. & Farh, K. K. H., 2024, In: Nature. 625, p. 735–742 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Imaging of extracellular and intracellular ATP in pancreatic beta cells reveals correlation between glucose metabolism and purinergic signalling

    Ghiasi, S. M., Christensen, Nynne, Pedersen, Per Amstrup, Skovhøj, Emil Zeng & Novak, Ivana, 2024, In: Cellular Signalling. 117, 12 p., 111109.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Impact of salinity and temperature on the vital rates of co-occurring Calanus glacialis and C. finmarchicus from West Greenland

    Makri, M., Hansen, Per Juel & Gissel Nielsen, T., 2024, In: Marine Ecology - Progress Series. 729, p. 47-62 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. E-pub ahead of print

    Impact of the early COVID-19 pandemic on adult mental health-related dispensed medications, hospitalizations and specialist outpatient visits in Norway and Sweden: Interrupted time series analysis

    Moreno-Martos, D., Zhao, J., Li, H., Nyberg, F., Bjørndal, L. D., Hajiebrahimi, M., Wettermark, B., Aakjær, Mia, Andersen, Morten, Sessa, Maurizio, Lupattelli, A., Nordeng, H. & Morales, D. R., 2024, (E-pub ahead of print) In: British Journal of Clinical Pharmacology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. E-pub ahead of print

    Importance of integrating mixoplankton into marine ecosystem policy and management—Examples from the Marine Strategy Framework Directive

    Anschütz, A., Maselli, Maira, Traboni, C., Boon, A. R. & Stolte, W., 2024, (E-pub ahead of print) In: Integrated Environmental Assessment and Management.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Integrating coarse-grained molecular dynamics simulations with small-angle X-ray scattering data to characterize multidomain proteins and their assemblies

    Thomasen, Emil, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. E-pub ahead of print

    International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis

    Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, Roh, J., Dai, E., Juhasz, G., Liu, W., Zhang, J., Yang, M., Liu, J., Zhu, L., Zou, W., Piacentini, M., Ding, W., Yue, Z., Xie, Y., Petersen, Morten, Gewirtz, D. A., Mandell, M. A., Chu, C. T., Sinha, D., Eftekharpour, E., Zhivotovsky, B., Besteiro, S., Gabrilovich, D. I., Kim, D., Kagan, V. E., Bayir, H., Chen, G., Ayton, S., Lünemann, J. D., Komatsu, M., Krautwald, S., Loos, B., Baehrecke, E. H., Wang, J., Lane, J. D., Sadoshima, J., Yang, W. S., Gao, M., Münz, C., Thumm, M., Kampmann, M., Yu, D., Lipinski, M. M., Jones, J. W., Jiang, X., Zeh, H. J., Kang, R., Klionsky, D. J., Kroemer, G. & Tang, D., 2024, (E-pub ahead of print) In: Autophagy. p. 1-34

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study

    Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection

    Sadiq, F. A., De Reu, K., Yang, Nan, Burmølle, Mette & Heyndrickx, M., 2024, In: Biofilm. 7, 13 p., 100195.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Intra-colony spatial variance of oxyregulation and hypoxic thresholds for key Acropora coral species

    Dilernia, N. J., Woodcock, S., Camp, E. F., Hughes, D. J., Kühl, Michael & Suggett, D. J., 2024, In: Ecology and Evolution. 14, 3, 16 p., e11100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Investigations on Microbes Attached to the Cuticle of Phytonematodes

    Topalovic, Olivera, Radaković, Z. S., Elhady, A., Bredenbruch, S. & Heuer, H., 2024, Plant-Nematode Interactions. Molinari, S. (ed.). Vol. 2756. p. 257-270 14 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  49. Published

    Isochrony in barks of Cape fur seal (Arctocephalus pusillus pusillus) pups and adults

    Osiecka, A. N., Fearey, J., Ravignani, A. & Burchardt, L. S., 2024, In: Ecology and Evolution. 14, 3, 11 p., e11085.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

    Rauluseviciute, I., Riudavets-puig, R., Blanc-mathieu, R., Castro-mondragon, J., Ferenc, K., Kumar, V., Lemma, R. B., Lucas, J., Chèneby, J., Baranasic, D., Khan, A., Fornes, O., Gundersen, S., Johansen, M., Hovig, E., Lenhard, B., Sandelin, Albin Gustav, Wasserman, W., Parcy, F. & Mathelier, A., 2024, In: Nucleic Acids Symposium Series. 52, D1, p. D174–D182 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Lipid shape and packing are key for optimal design of pH-sensitive mRNA lipid nanoparticles

    Tesei, Giulio, Hsiao, Y. W., Dabkowska, A., Grönberg, G., Yanez Arteta, M., Ulkoski, D., Bray, D. J., Trulsson, M., Ulander, J., Lund, M. & Lindfors, L., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 2, 11 p., e2311700120.

    Research output: Contribution to journal › Journal article › Research › peer-review

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