Department of Biology

 

 
  1. 2024
  2. Published

    Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum

    Jian, J., Wu, Z., Silva-núñez, A., Li, X., Zheng, X., Luo, B., Liu, Y., Fang, X., Workman, C. T., Larsen, T. O., Hansen, Per Juel & Sonnenschein, E. C., 2024, In: Science of the Total Environment. 908, 168042.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published
  4. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

    Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. E-pub ahead of print

    MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch

    Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, (E-pub ahead of print) In: Nature Genetics.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Mechanisms of Systemic Osmoregulation in Insects

    Halberg, Kenneth Veland & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

    Research output: Contribution to journalReviewResearchpeer-review

  8. Published

    Meta‐analysis Contrasting Freshwater Biodiversity in Forests and Oil Palm Plantations with and without Riparian Buffers

    Rojas‐Castillo, O. A., Kepfer Rojas, Sebastian, Juen, L., Fogaça De Assis Montag, L., Carvalho, F. G., Mendes, T. P., Chua, K. W. J., Wilkinson, C. L., Amal, M. N. A., Fahmi‐Ahmad, M. & Jacobsen, Dean, 2024, In: Conservation Biology. 38, 1, p. 1-14 14 p., e14172.

    Research output: Contribution to journalReviewResearchpeer-review

  9. Published

    Microbial Symbiont Contributions to Fungus-Farming Termite Health and Disease

    Murphy, Rob, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 317 p.

    Research output: Book/ReportPh.D. thesisResearch

  10. Published

    Microbial community composition unaffected by mycorrhizal plant removal in sub-arctic tundra

    Kirchhoff, L., Gavazov, K., Blume-Werry, G., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering, Peter, M., Pfister, S., Väisänen, M. & Monteux, S., 2024, In: Fungal Ecology. 69, 11 p., 101342.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity

    Raju, S. C., Molinaro, A., Awoyemi, A., Jørgensen, S. F., Braadland, P. R., Nendl, A., Seljeflot, I., Ueland, P. M., McCann, A., Aukrust, P., Vestad, B., Mayerhofer, C., Broch, K., Gullestad, L., Lappegård, K. T., Halvorsen, B., Kristiansen, Karsten, Hov, J. R. & Trøseid, M., 2024, In: Genome Medicine. 16, 1, 12 p., 27.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Microeukaryotic plankton evolutionary constraints in a subtropical river explained by environment and bacteria along differing taxonomic resolutions

    Ren, K., Mo, Y., Xiao, P., Rønn, Regin, Xu, Z., Xue, Y., Chen, H., Rivera, W. L., Rensing, C. & Yang, J., 2024, In: ISME communications. 4, 1, 10 p., ycae026.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Molecular switching in transcription through splicing and proline-isomerization regulates stress responses in plants

    Theisen, Frederik Friis, Prestel, Andreas, Elkjær, Steffie Martina H, Leurs, Y. H. A., Morffy, N., Strader, L. C., O'Shea, Charlotte, Teilum, Kaare, Kragelund, Birthe Brandt & Skriver, Karen, 2024, In: Nature Communications. 15, 1, 13 p., 592.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts

    Pearman, P. B., Broennimann, O., Aavik, T., Albayrak, T., Alves, P. C., Aravanopoulos, F. A., Bertola, L. D., Biedrzycka, A., Buzan, E., Cubric-Curik, V., Djan, M., Fedorca, A., Fuentes-Pardo, A. P., Fussi, B., Godoy, J. A., Gugerli, F., Hoban, S., Holderegger, R., Hvilsom, C., Iacolina, L. & 32 others, Kalamujic Stroil, B., Klinga, P., Konopiński, M. K., Kopatz, A., Laikre, L., Lopes-Fernandes, M., McMahon, B. J., Mergeay, J., Neophytou, C., Pálsson, S., Paz-Vinas, I., Posledovich, D., Primmer, C. R., Raeymaekers, J. A. M., Rinkevich, B., Rolečková, B., Ruņģis, D., Schuerz, L., Segelbacher, G., Kavčič Sonnenschein, K., Stefanovic, M., Thurfjell, H., Träger, S., Tsvetkov, I. N., Velickovic, N., Vergeer, P., Vernesi, C., Vilà, C., Westergren, M., Zachos, F. E., Guisan, A. & Bruford, M., 2024, In: Nature Ecology and Evolution. 8, p. 267–281 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Myotubularin-related-protein-7 inhibits mutant (G12V) K-RAS by direct interaction

    Weidner, P., Saar, D., Söhn, M., Schroeder, T., Yu, Y., Zöllner, F. G., Ponelies, N., Zhou, X., Zwicky, A., Rohrbacher, F. N., Pattabiraman, V. R., Tanriver, M., Bauer, A., Ahmed, H., Ametamey, S. M., Riffel, P., Seger, R., Bode, J. W., Wade, R. C., Ebert, M. P. A. & 2 others, Kragelund, Birthe Brandt & Burgermeister, E., 2024, In: Cancer Letters. 588, 19 p., 216783.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Nature Forest Reserves in Tanzania and their importance for conservation

    Ract, C., Burgess, Neil David, Dinesen, Lars, Sumbi, P., Malugu, I., Latham, J., Anderson, L., Gereau, R. E., de Lima, M. G., Akida, A., Nashanda, E., Shabani, Z., Tango, Y., Mteleka, S., Silayo, D. S., Mwangi, J., Lyatuu, G., Platts, P. J. & Rovero, F., 2024, In: PLoS ONE. 19, 2, 15 p., e0281408.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system

    Bittner, Meriel Jennifer, Bannon, C. C., Rowland, E., Sundh, J., Bertrand, E. M., Andersson, A. F., Paerl, R. W. & Riemann, Lasse, 2024, In: ISME communications. 4, 1, 16 p., ycad016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Nitrogen immobilization could link extreme winter warming events to Arctic browning

    Rasmussen, Laura Helene, Danielsen, Birgitte Kortegaard, Elberling, Bo, Ambus, Per Lennart, Björkman, M. P., Rinnan, Riikka & Andresen, L. C., 2024, In: Soil Biology and Biochemistry. 191, 11 p., 109319.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Nitrogen uptake in lentil cultivar mixtures is not predictable from pure stands performance but is correlated with agronomic parameters and experimental conditions

    Lorenzetti, E., Carlesi, S., Michelsen, Anders & Bàrberi, P., 2024, In: Agriculture and Food Security. 13, 1, 13 p., 11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

    Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Organismal and cellular growth control by cholesterol as a nutritronal signal

    Lassen, Mette, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/ReportPh.D. thesisResearch

  22. Published

    Osmotic stress tolerance and transcriptomic response of Ramazzottius varieornatus (Eutardigrada: Ramazzottiidae) following tun formation

    Emdee, N., Møbjerg, A., Grollmann, M. M. & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 220-229 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. E-pub ahead of print

    Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

    Jimenez Serna, Juan de la Cruz, Armstrong, W., Colmer, T. D. & Pedersen, Ole, 2024, (E-pub ahead of print) In: Plant Physiology. kiae046.

    Research output: Contribution to journalComment/debateResearchpeer-review

  24. Published

    PICH deficiency limits the progression of MYC-induced B-cell lymphoma

    Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    PPARγ antagonists induce aromatase transcription in adipose tissue cultures

    Ardenkjær-Skinnerup, J., Saar, Daniel, Petersen, Patricia Stephanie S, Pedersen, M., Svingen, T., Kragelund, Birthe Brandt, Hadrup, N., Ravn-Haren, G., Emanuelli, Brice, Brown, K. A. & Vogel, U., 2024, In: Biochemical Pharmacology. 222, 13 p., 116095.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Phytoplankton community changes in relation to nutrient fluxes along a quasi-stationary front

    Bendtsen, Jørgen, Daugbjerg, Niels, Jensen, R. S., dbt998, dbt998, Nielsen, M. H., Hansen, J. L. S. & Richardson, Katherine, 2024, In: Marine Ecology - Progress Series. 727, p. 67-80 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Phytoremediation in the Guadiamar Green Corridor (SW Spain): Trace element uptake by plants and effects on soil fungal diversity

    Madejón, P., Domínguez, M. T., Gil-Martínez, M. & Madejón, E., 2024, In: Advances in Botanical Research. 109, p. 255-294 40 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Plant trait and vegetation data along a 1314 m elevation gradient with fire history in Puna grasslands, Perú

    Halbritter, A. H., Vandvik, V., Cotner, S. H., Farfan-Rios, W., Maitner, B. S., Michaletz, S. T., Oliveras Menor, I., Telford, R. J., Ccahuana, A., Cruz, R., Sallo-Bravo, J., Santos-Andrade, P. E., Vilca-Bustamante, L. L., Castorena, M., Chacón-Labella, J., Christiansen, C. T., Duran, S. M., Egelkraut, D. D., Gya, R., Haugum, S. V. & 42 others, Seltzer, L., Silman, M. R., Strydom, T., Spiegel, M. P., Barros, A., Birkeli, K., Boakye, M., Chiappero, F., Chmurzynski, A., Garen, J. C., Gaudard, J., Gauthier, T. L. J., Geange, S. R., Gonzales, F. N., Henn, J. J., Hošková, K., Isaksen, A., Jessup, L. H., Johnson, W., Kusch, E., Lepley, K., Lift, M., Martyn, T. E., Muñoz Mazon, M., Middleton, S. L., Quinteros Casaverde, N. L., Navarro, J., Zepeda, V., Ocampo-Zuleta, K., Palomino-Cardenas, A. C., Pastor Ploskonka, S., Pierfederici, M. E., Pinelli, V., Rickenback, J., Roos, R. E., Rui, H. S., Sanchez Diaz, E., Sánchez-Tapia, A., Smith, A., Urquiaga-Flores, E., von Oppen, J. & Enquist, B. J., 2024, In: Scientific Data. 11, 1, 18 p., 225.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia

    Rodrigues da Fonseca, Rute Andreia, Campos, P. F., Rey de la Iglesia, Alba, Barroso, G. V., Bergeron, Lucie Adrienne, Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Population genomics of the muskox' resilience in the near absence of genetic variation

    Pečnerová, P., Lord, E., Garcia-Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., Lin, L., Liu, S., Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, A., Rasmussen, L. & 11 others, Hvilsom, C., Heide-Jørgensen, M. P., Sinding, Mikkel Holger Strander, Aastrup, P., Van Coeverden de Groot, P. J., Schmidt, N. M., Albrechtsen, Anders, Dalén, L., Heller, Rasmus, Moltke, Ida & Siegismund, Hans Redlef, 2024, In: Molecular Ecology. 33, 2, 25 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Population size and social structure of lions in a west African protected area

    Gueye, M., Pellaton, R., Van Cauteren, D., Mengual, L., Van Dongen, S., Leirs, H., Bertola, Laura, Faye, P. M., Diop, B., Diop, M. M., Kanté, A. & de Iongh, H., 2024, In: African Journal of Ecology. 62, 1, 11 p., e13226.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Population structure and migration in the Eastern Highlands of Papua New Guinea, a region impacted by the kuru epidemic

    Quinn, Liam James Elgaard, Whitfield, J., Alpers, M. P., Campbell, T., Hummerich, H., Pomat, W., Siba, P., Koki, G., Moltke, Ida, Collinge, J., Hellenthal, G. & Mead, S., 2024, In: American Journal of Human Genetics. 111, 4, p. 668-679 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Positive selection has shaped the evolution of Argentine ant immune genes both in native and introduced supercolonies

    Holmberg, I., Tolonen, L., Paviala, J., Pedersen, Jes Søe, Helanterä, H. & Viljakainen, L., 2024, In: Journal of Evolutionary Biology. 37, 2, p. 131–140 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Postembryonic development and male paedomorphosis in Osedax (Siboglinidae, Annelida)

    Worsaae, Katrine, Rouan, Alice Jeanne Monique Nadja, Seaver, E., Miyamoto, N. & Tilic, E., 2024, In: Frontiers in Neuroscience. 18, 18 p., 1369274.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Predicting peptide–MHC stability and immunogenicity with deep learning

    Prachar, Marek, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 258 p.

    Research output: Book/ReportPh.D. thesisResearch

  36. Published

    Protein variant effect prediction using machine learning

    Blaabjerg, Lasse Møller, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 164 p.

    Research output: Book/ReportPh.D. thesisResearch

  37. Published

    Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops

    Fagerstedt, K. V., Pucciariello, C., Pedersen, Ole & Perata, P., 2024, In: Journal of Experimental Botany. 75, 5, p. 1217–1233 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Recommendations for Bioinformatic Tools in lncRNA Research

    Distefano, R., Ilieva, M., Rennie, Sarah & Uchida, S., 2024, In: Current Bioinformatics. 19, 1, p. 14-20 7 p.

    Research output: Contribution to journalReviewResearchpeer-review

  39. Published

    Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere

    Jackson, M. C., Friberg, N., Moliner Cachazo, L., Clark, D. R., Mutinova, P. T., O’Gorman, E. J., Kordas, R. L., Gallo, B., Pichler, D. E., Bespalaya, Y., Aksenova, O. V., Milner, A., Brooks, S. J., Dunn, N., Lee, K. W. K., Ólafsson, J. S., Gíslason, G. M., Millan, L., Bell, T., Dumbrell, A. J. & 1 others, Woodward, G., 2024, In: Communications Biology . 7, 1, 8 p., 316.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Regulation of polycystin-2 trafficking to and at the primary cilium in kidney epithelial cells

    Rezi, Csenge Kata, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 188 p.

    Research output: Book/ReportPh.D. thesisResearch

  41. Published

    Relationship between the female cervico-vaginal microbiome and women’s health

    Chen, Chen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 141 p.

    Research output: Book/ReportPh.D. thesisResearch

  42. Published

    Removal from the wild endangers the once widespread long-tailed macaque

    Gamalo, L. E., Ilham, K., Jones-Engel, L., Gill, M., Sweet, R., Aldrich, B., Phiapalath, P., Van Bang, T., Ahmed, T., Kite, S., Paramasivam, S., Seiha, H., Zainol, M. Z., Nielsen, D. R. K., Ruppert, N., Fuentes, A. & Hansen, Malene Friis, 2024, In: American Journal of Primatology. 86, 3, 10 p., e23547.

    Research output: Contribution to journalComment/debateResearchpeer-review

  43. Published

    Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

    Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Root acclimations to soil flooding prime rice (Oryza sativa L.) for subsequent conditions of water deficit

    Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa, Liu, Fulai, Tomasella, M., Nardini, A. & Pedersen, Ole, 2024, In: Plant and Soil. 494, p. 529-546

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Seafloor primary production in a changing Arctic Ocean

    Attard, K., Singh, R. K., Gattuso, J. P., Filbee-Dexter, K., Krause-Jensen, D., Kühl, Michael, Sejr, M. K., Archambault, P., Babin, M., Bélanger, S., Berg, P., Glud, R. N., Hancke, K., Jänicke, S., Qin, J., Rysgaard, S., Sørensen, E. B., Tachon, F., Wenzhöfer, F. & Ardyna, M., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 11, 10 p., e2303366121.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs

    Brodersen, Kasper Elgetti, Moßhammer, Maria, Bittner, Meriel Jennifer, Hallstrøm, S., Santner, J., Riemann, Lasse & Kühl, Michael, 2024, In: Microbiology Spectrum. 12, 4, 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Short- and long-term plant and microbial uptake of 15N-labelled urea in a mesic tundra heath, West Greenland

    Barthelemy, H., Nobel, L. A., Stark, S., Väisänen, M., Olofsson, J. & Michelsen, Anders, 2024, In: Polar Biology. 47, p. 1-15 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Spatial chromatin accessibility sequencing resolves high-order spatial interactions of epigenomic markers

    Xie, Y., Ruan, F., Li, Y., Luo, M., Zhang, C., Chen, Z., Xie, Z., Weng, Z., Chen, W., Chen, W., Fang, Y., Sun, Y., Guo, M., Wang, J., Xu, S., Wang, H. & Tang, C., 2024, In: eLife. 12, 20 p., RP87868.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Strong individual distinctiveness across the vocal repertoire of a colonial seabird, the little auk, Alle alle

    Osiecka, A. N., Briefer, Elodie, Kidawa, D. & Wojczulanis-Jakubas, K., 2024, In: Animal Behaviour. 210, p. 199-211 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation

    Wang, D., Yang, X., Ren, Z., Hu, B., Zhao, H., Yang, K., Shi, P., Zhang, Z., Feng, Q., Nawenja, C. V., Obanda, V., Robert, K., Nalikka, B., Waruhiu, C. N., Ochola, G. O., Onyuok, S. O., Ochieng, H., Li, B., Zhu, Y., Si, H. & 9 others, Yin, J., Kristiansen, Karsten, Jin, X., Xu, X., Xiao, M., Agwanda, B., Ommeh, S., Li, J. & Shi, Z. L., 2024, In: Microbiome. 12, 1, 17 p., 72.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Targeting synthesis of the Chromosome Replication Initiator Protein DnaA by antisense PNA-peptide conjugates in Escherichia coli

    Campion, C., Charbon, Godefroid, Nielsen, Peter E. & Løbner-Olesen, Anders, 2024, In: Frontiers in Antibiotics. 3, 10 p., 1384390.

    Research output: Contribution to journalJournal articleResearchpeer-review

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