Department of Biology

 

 
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  1. 2023
  2. Published

    Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning

    Horlacher, M., Wagner, N., Moyon, L., Kuret, K., Goedert, N., Salvatore, Marco, Ule, J., Gagneur, J., Winther, Ole & Marsico, A., 2023, In: Genome Biology. 24, 1, 37 p., 180.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The Origin of Recent Climate: Drifting into the ice ages

    Houmark-Nielsen, Michael, 2023, The Origins of All Things. Harper, D. A. T. & Seberg, O. (eds.). 1 ed. København: Munksgaard , Vol. 1. p. 357-371 15 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

  4. Published

    The snowball Earth Hyphotesis - a Planet in the Fridge

    Houmark-Nielsen, Michael & Stouge, Svend, 2023, The Origins of All Things. Harper, D. A. T. & Seberg, O. (eds.). 1 ed. Copenhagen: Munksgaard , Vol. 1. p. 129-155 26 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

  5. Published

    Intermittent fasting modulates the intestinal microbiota and improves obesity and host energy metabolism

    Hu, X., Xia, K., Dai, M., Han, X., Yuan, P., Liu, J., Liu, S., Jia, F., Chen, J., Jiang, F., Yu, J., Yang, H., Wang, J., Xu, X., Jin, X., Kristiansen, Karsten, Xiao, L., Chen, W., Han, Mo & Duan, S., 2023, In: npj Biofilms and Microbiomes. 9, 1, 9 p., 19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Bacillus velezensis SQR9 inhibition to fungal denitrification responsible for decreased N2O emissions from acidic soils

    Huang, Mengyuan, Zhang, Y., Wu, J., Wang, Y., Xie, Y., Geng, Y., Zhang, N., Michelsen, Anders, Li, S., Zhang, R., Shen, Q. & Zou, J., 2023, In: Science of the Total Environment. 885, 10 p., 163789.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    New insights into osmobiosis and chemobiosis in tardigrades

    Hvidepil, L. K. B. & Møbjerg, Nadja, 2023, In: Frontiers in Physiology. 14, 9 p., 1274522.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Ketone body infusion abrogates growth hormone-induced lipolysis and insulin resistance

    Høgild, M. L., Hjelholt, A. J., Hansen, J., Pedersen, Steen, Møller, N., Wojtaszewski, Jørgen F P, Johannsen, M., Jessen, N. & Lunde Jørgensen, J. O., 2023, In: Journal of Clinical Endocrinology and Metabolism. 108, 3, p. 653-664 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Interactions between microenvironmental acidity and PDAC driver mutations studied in 3D organotypic culture

    Ialchina, Renata, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 261 p.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    Phage-Inducible Chromosomal Islands as a Diagnostic Platform to Capture and Detect Bacterial Pathogens

    Ibarra Chavez, Rodrigo, Reboud, J., Penadés, J. R. & Cooper, J. M., 2023, In: Advanced Science. 10, 24, 11 p., 2301643.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Administration of vitamin E and C enhances immunological and biochemical responses against toxicity of silver nanoparticles in grass carp (Ctenopharyngodon idella)

    Iqbal, K. J., Majeed, H., Iqbal, K. J., Asghar, M., Azmat, H., Fatima, M., Khan, N., Baboo, I., Tehseen, A., Ali, W., Saeed, Usama, Khizar, A., Fatima, A., Nisa, S. & Davies, S. J., 2023, In: PLoS ONE. 18, 4, 21 p., e0284285.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Determination of heavy metals (Pb, Cr, As, Hg, and Cd) into the body organs of selected fish, water, sediment, and soil samples from Head Punjnad and Head Taunsa, Punjab, Pakistan

    Iqbal, K. J., Khan, N., Fatima, M., Lashari, M. H., Asad, M., Ashraf, A., Fatima, H., Majeed, H., Baboo, I., Iqbal, K. J., Asghar, M., Saeed, Usama, Ali, W., Nazir, S., Bano, S. & Tanveer, A., 2023, In: PLoS ONE. 18, 9, 10 p., e0288163.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Phosphorylation of Schizosaccharomyces pombe Dss1 mediates direct binding to the ubiquitin-ligase Dma1 in vitro

    Jacobsen, Nina Louise, Bloch, Magnus Borup, Millard, P. S., Ruidiaz, Sarah Frederiksen, Elsborg, Jonas Damgaard, Boomsma, Wouter, Hendus-Altenburger, R., Hartmann-Petersen, Rasmus & Kragelund, Birthe Brandt, 2023, In: Protein Science. 32, 9, 16 p., e4733.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Genotypic variations and interspecific interactions modify gene expression and biofilm formation of Xanthomonas retroflexus

    Jacquiod, S., Olsen, N. M. C., Blouin, M., Røder, Henriette Lyng & Burmølle, Mette, 2023, In: Environmental Microbiology. 25, 12, 3225-3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    DermX: An end-to-end framework for explainable automated dermatological diagnosis

    Jalaboi, R., Faye, F., Orbes-Arteaga, M., Jørgensen, D., Winther, Ole & Galimzianova, A., 2023, In: Medical Image Analysis. 83, 12 p., 102647.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Explainable Image Quality Assessments in Teledermatological Photography

    Jalaboi, R., Winther, Ole & Galimzianova, A., 2023, In: Telemedicine and e-Health. 29, 9, p. 1342-1348 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Limited historical admixture between European wildcats and domestic cats

    Jamieson, A., Carmagnini, A., Howard-McCombe, J., Doherty, S., Hirons, A., Dimopoulos, E., Lin, A. T., Allen, R., Anderson-Whymark, H., Barnett, R., Batey, C., Beglane, F., Bowden, W., Bratten, J., De Cupere, B., Drew, E., Foley, N. M., Fowler, T., Fox, A., Geigl, E-M. & 35 others, Gotfredsen, Anne Birgitte, Grange, T., Griffiths, D., Groß, D., Haruda, A., Hjermind, J., Knapp, Z., Lebrasseur, O., Librado, P., Lyons, L. A., Mainland, I., McDonnell, C., Muñoz-Fuentes, V., Nowak, C., O'Connor, T., Peters, J., Russo, I. M., Ryan, H., Sheridan, A., Sinding, Mikkel Holger Strander, Skoglund, P., Swali, P., Symmons, R., Thomas, G., Jensen, Theis Zetner Trolle, Kitchener, A. C., Senn, H., Lawson, D., Driscoll, C., Murphy, W. J., Beaumont, M., Ottoni, C., Sykes, N., Larson, G. & Frantz, L., 2023, In: Current Biology. 33, 21, p. 4751-4760.e14

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Understory functional groups and fire history but not experimental warming drive tree seedling performance in unmanaged boreal forests

    Jessen, M. T., Krab, E. J., Lett, Signe, Nilsson, M., Teuber, L., Wardle, D. A. & Dorrepaal, E., 2023, In: Frontiers in Forests and Global Change. 6, 10 p., 1130532.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Microscale imaging sheds light on species-specific strategies for photo-regulation and photo-acclimation of microphytobenthic diatoms

    Jesus, B., Jauffrais, T., Trampe, Erik, Méléder, V., Ribeiro, L., Bernhard, J. M., Geslin, E. & Kühl, Michael, 2023, In: Environmental Microbiology. 25, 12, p. 3087-3103 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Genome-wide characterization of extrachromosomal circular DNA in gastric cancer and its potential role in carcinogenesis and cancer progression

    Jiang, X., Pan, Xiaoguang, Li, W., Han, Peng, Yu, J., Li, J., Zhang, H., Lv, W., Zhang, Y., He, Y. & Xiang, X., 2023, In: Cellular and Molecular Life Sciences. 80, 7, 18 p., 191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Soil uptake of VOCs exceeds production when VOCs are readily available

    Jiao, Yi, Kramshøj, M., Davie-Martin, Cleo Lisa, Albers, C. N. & Rinnan, Riikka, 2023, In: Soil Biology and Biochemistry. 185, 12 p., 109153.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Volatile organic compound release across a permafrost-affected peatland

    Jiao, Yi, Davie-Martin, Cleo Lisa, Kramshøj, M., Christiansen, C. T., Lee, H., Althuizen, I. H. J. & Rinnan, Riikka, 2023, In: Geoderma. 430, 10 p., 116355.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A consortium of three-bacteria isolated from human feces inhibits formation of atherosclerotic deposits and lowers lipid levels in a mouse model

    Jie, Z., Zhu, Q., Zou, Y., Wu, Q., Qin, M., He, D., Lin, X., Tong, X., Zhang, J., Jie, Z., Luo, W., Xiao, X., Chen, S., Wu, Y., Guo, G., Zheng, S., Li, Y., Lai, W., Yang, H., Wang, J. & 6 others, Xiao, L., Chen, J., Zhang, T., Kristiansen, Karsten, Jia, H. & Zhong, S., 2023, In: iScience. 26, 6, 22 p., 106960.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Mitigation of Greenhouse Gas Emissions from Rice via Manipulation of Key Root Traits

    Jimenez Serna, Juan de la Cruz & Pedersen, Ole, 2023, In: Rice. 16, 1, 10 p., 24.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Bacillus thuringiensis toxins divert progenitor cells toward enteroendocrine fate by decreasing cell adhesion with intestinal stem cells in Drosophila

    Jneid, Rouba, Loudhaief, Rihab, Zucchini-Pascal, N., Nawrot-Esposito, M. P., Fichant, A., Rousset, R., Bonis, M., Osman, D. & Gallet, A., 2023, In: eLife. 12, 34 p., e80179.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

    Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    The GPCR adaptor protein Norbin regulates S1PR1 trafficking and the morphology, cell cycle and survival of PC12 cells

    Johansen, Valdemar Brimnes Ingemann, Hampson, E., Tsonou, E., Pantarelli, C., Chu, J. Y., Crossland, L., Okkenhaug, H., Massey, A. J., Hornigold, D. C., Welch, H. C. E. & Chetwynd, S. A., 2023, In: Scientific Reports. 13, 1, 13 p., 18237.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A Gluten-Free Diet during Pregnancy and Early Life Increases Short Chain Fatty Acid-Producing Bacteria and Regulatory T Cells in Prediabetic NOD Mice

    Johansen, Valdemar Brimnes Ingemann, Færø, D., Buschard, K., Kristiansen, Karsten, Pociot, Flemming, Kiilerich, P., Josefsen, K., Haupt-jorgensen, M. & Antvorskov, J. C., 2023, In: Cells. 12, 12, 15 p., 1567.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Sarcopenia in chronic obstructive pulmonary disease: skeletal muscle gasping for air?

    Johansen, Valdemar Brimnes Ingemann, 2023, In: Journal of Physiology. 601, 5, p. 883-885

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  30. Published

    The Impact of Dietary Factors during Pregnancy on the Development of Islet Autoimmunity and Type 1 Diabetes: A Systematic Literature Review

    Johansen, Valdemar Brimnes Ingemann, Josefsen, K. & Antvorskov, J. C., 2023, In: Nutrients. 15, 20, 24 p., 4333.

    Research output: Contribution to journal › Review › Research › peer-review

  31. Published

    Global analysis of multi-mutants to improve protein function

    Johansson, Kristoffer Enøe, Lindorff-Larsen, Kresten & Winther, Jakob R., 2023, In: Journal of Molecular Biology. 435, 8, 15 p., 168034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Prediction of Quality-control Degradation Signals in Yeast Proteins

    Johansson, Kristoffer Enøe, Mashahreh, B., Hartmann-Petersen, Rasmus, Ravid, T. & Lindorff-Larsen, Kresten, 2023, In: Journal of Molecular Biology. 435, 2, 9 p., 167915.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Association of SLC12A1 and GLUR4 Ion Transporters with Neoadjuvant Chemoresistance in Luminal Locally Advanced Breast Cancer

    Justo-Garrido, M., López-Saavedra, A., Alcaraz, N., Cortés-González, C. C., Oñate-Ocaña, L. F., Caro-Sánchez, C. H. S., Castro-Hernández, C., Arriaga-Canon, C., Díaz-Chávez, J. & Herrera, L. A., 2023, In: International Journal of Molecular Sciences. 24, 22, 16 p., 16104.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Intraspecific trait variability is a key feature underlying high Arctic plant community resistance to climate warming

    Jónsdóttir, I. S., Halbritter, A. H., Christiansen, C. T., Althuizen, I. H. J., Haugum, S. V., Henn, J. J., Björnsdóttir, K., Maitner, B. S., Malhi, Y., Michaletz, S. T., Roos, R. E., Klanderud, K., Lee, H., Enquist, B. J. & Vandvik, V., 2023, In: Ecological Monographs. 93, 1, 21 p., e1555.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Staying below the Radar: Unraveling a New Family of Ubiquitous “Cryptic” Non-Tailed Temperate Vibriophages and Implications for Their Bacterial Hosts

    Kalatzis, P. G., Mauritzen, Jesper Juel, Winther-Have, Caroline Sophie W, Michniewski, S., Millard, A., Tsertou, M. I., Katharios, P. & Middelboe, Mathias, 2023, In: International Journal of Molecular Sciences. 24, 4, 23 p., 3937.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Lysine deserts prevent adventitious ubiquitylation of ubiquitin-proteasome components

    Kampmeyer, Caroline, Grønbæk-Thygesen, Martin, Oelerich, N., Tatham, M. H., Cagiada, Matteo, Lindorff-Larsen, K., Boomsma, Wouter, Hofmann, K. & Hartmann-Petersen, Rasmus, 2023, In: Cellular and Molecular Life Sciences. 80, 6, 18 p., 143.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A genome and single-nucleus cerebral cortex transcriptome atlas of the short-finned pilot whale Globicephala macrorhynchus

    Kang, H., Liu, Qun, Seim, I., Zhang, W., Li, H., Gao, H., Lin, W., Lin, M., Zhang, P., Zhang, Y., Gao, H., Wang, Y., Qin, Yating, Liu, M., Dong, L., Yang, Z., Zhang, Y., Han, L., Fan, G. & Li, S., 2023, In: Molecular Ecology Resources. 23, 5, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Ultrastructure and molecular phylogeny of Phalansterium foulumis sp. nov. (Amoebozoa Variosea)

    Karpov, S. A., Smakova, L. A., Malavin, S. A., Ekelund, Flemming & Smirnov, A. V., 2023, In: Protistology. 17, 3, p. 129-141 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Congeneric temperate orchids recruit similar—yet differentially abundant—endophytic bacterial communities that are uncoupled from soil, but linked to host phenology and population size

    Kaur, J., Harder, Christoffer Bugge & Sharma, J., 2023, In: American Journal of Botany. 110, 5, 16 p., e16168.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Metaboloepigenetics in cancer, immunity and cardiovascular disease

    Keating, S. T. & El-Osta, A., 2023, In: Cardiovascular Research. 119, 2, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Antifouling potential of enzymes applied to reverse osmosis membranes

    Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Editorial: Signaling by primary cilia in development and disease

    Kim, S. E., Nechipurenko, I. & Christensen, Søren Tvorup, 2023, In: Frontiers in Cell and Developmental Biology. 11, 3 p., 1186367.

    Research output: Contribution to journal › Editorial › Research › peer-review

  43. Published

    TBC1D4-S711 controls skeletal muscle insulin sensitization after exercise and contraction

    Kjøbsted, Rasmus, Kristensen, Jonas Møller, Eskesen, N. O., Kido, K., Fjorder, Klara, Damgaard, D. F., Larsen, Jeppe Kjærgaard, Andersen, Nicoline Resen, Birk, Jesper Bratz, Gudiksen, Anders, Treebak, Jonas Thue, Schjerling, Peter, Pilegaard, Henriette & Wojtaszewski, Jørgen F P, 2023, In: Diabetes. 72, 7, p. 857-871 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Oxygen Depletion in Arctic Lakes: Circumpolar Trends, Biogeochemical Processes, and Implications of Climate Change

    Klanten, Y., Couture, R. M., Christoffersen, Kirsten Seestern, Vincent, W. F. & Antoniades, D., 2023, In: Global Biogeochemical Cycles. 37, 5, 20 p., e2022GB007616.

    Research output: Contribution to journal › Review › Research › peer-review

  45. Published

    Linkages between seagrass tissue O2 dynamics and ecosystem oxidation and feedbacks are revealed using microsensors in situ

    Koch, M., Johnson, C., MacLeod, K., Travis, L., Madden, C. & Pedersen, Ole, 2023, p. 221. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  46. Published

    Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2002, 11 p., 20230988.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Genetics as a novel tool in mining impact assessment and biomonitoring of critically endangered western chimpanzees in the Nimba Mountains, Guinea

    Koops, K., Humle, T., Frandsen, P., Fitzgerald, M., D'Auvergne, L., Jackson, H. A., Børsting, Claus, Siegismund, Hans Redlef, Soumah, A. G. & Hvilsom, C., 2023, In: Conservation Science and Practice. 5, 4, 17 p., e12898.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Close coupling of plant functional types with soil microbial community composition drives soil carbon and nutrient cycling in tundra heath

    Koranda, M., Rinnan, Riikka & Michelsen, Anders, 2023, In: Plant and Soil. 488, p. 551-572 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Monomeric α-synuclein activates the plasma membrane calcium pump

    Kowalski, A., Betzer, C., Larsen, S. T., Gregersen, E., Newcombe, Estella Anne, Bermejo, M. C., Bendtsen, V. W., Diemer, J., Ernstsen, C. V., Jain, S., Bou, A. E., Langkilde, Annette Eva, Nejsum, L. N., Klipp, E., Edwards, R., Kragelund, Birthe Brandt, Jensen, P. H. & Nissen, Poul, 2023, In: EMBO Journal. 42, 23, 21 p., e111122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Managing fuels and fluids: Network integration of osmoregulatory and metabolic hormonal circuits in the polymodal control of homeostasis in insects

    Koyama, Takashi, Rana, Danial Wasim & Halberg, Kenneth Veland, 2023, In: BioEssays. 45, 9, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Realizing integration in structural biology: The 2022 ISBUC Annual Meeting

    Kragelund, Birthe Brandt, Loland, Claus Juul, Montoya, Guillermo, Hatzakis, Nikos, Martinez, Karen Laurence, Gajhede, Michael, Christensen, Caspar Elo & Holt, Lucy, 2023, In: Structure. 31, 7, p. 747-754

    Research output: Contribution to journal › Journal article › Research › peer-review

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