Department of Biology

 

 
  1. Published

    Lack of the Major Multifunctional Catalase KatA in Pseudomonas aeruginosa Accelerates Evolution of Antibiotic Resistance in Ciprofloxacin-Treated Biofilms

    Ahmed, M. N., Porse, A., Abdelsamad, A., Sommer, M., Høiby, Niels & Ciofu, Oana, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 10, 12 p., e00766-19.

    Research output: Contribution to journalJournal articlepeer-review

  2. Published

    Potent Inhibitor of Human Trypsins from the Aeruginosin Family of Natural Products

    Ahmed, M. N., Wahlsten, M., Jokela, J., Nees, M., Stenman, U., Alvarenga, Danillo Oliveira, Strandin, T., Sivonen, K., Poso, A., Permi, P., Metsä-Ketelä, M., Koistinen, H. & Fewer, D. P., 2021, In: ACS chemical biology. 16, 11, p. 2537–2546 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  3. Published

    Refinement of α-Synuclein Ensembles Against SAXS Data: Comparison of Force Fields and Methods

    Ahmed, M. C., Skaanning, L. K., Jussupow, A., Newcombe, Estella Anne, Kragelund, Birthe Brandt, Camilloni, C., Langkilde, Annette Eva & Lindorff-Larsen, Kresten, 2021, In: Frontiers in Molecular Biosciences. 8, 13 p., 654333.

    Research output: Contribution to journalJournal articlepeer-review

  4. Published

    Computing, Analyzing, and Comparing the Radius of Gyration and Hydrodynamic Radius in Conformational Ensembles of Intrinsically Disordered Proteins

    Ahmed, M. C., Crehuet, R. & Lindorff-Larsen, Kresten, 2020, Intrinsically Disordered Proteins: Methods and Protocols. Kragelund, B. B. & Skriver, K. (eds.). Humana Press, p. 429-445 17 p. (Methods in Molecular Biology, Vol. 2141).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  5. Published

    Structural Ensemble Refinement of Intrinsically Disordered Proteins using Experimental Data

    Ahmed, M. C. H., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 175 p.

    Research output: Book/ReportPh.D. thesis

  6. Published

    How well do force fields capture the strength of salt bridges in proteins?

    Ahmed, M. C. H., Papaleo, E. & Lindorff-Larsen, Kresten, 2018, In: PeerJ. 6, 17 p., 4967.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters

    Ahmed, S., Valen, E., Sandelin, Albin Gustav & Matthews, J., 2009, In: Toxicological Sciences. 111, 2, p. 254-266

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems

    Ahmerkamp, S., Jalaluddin, F. M., Cui, Y., Brumley, D. R., Pacherres, Cesar, Berg, J. S., Stocker, R., Kuypers, M. M. M., Koren, K. & Behrendt, L., 2022, In: Cell Reports Methods. 2, 5, 18 p., 100216.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Developmental Biology of the Pancreas: Notch and BMP signalling in Pancreas Development

    Ahnfelt-Rønne, J., 2009, Biologisk Institut: Museum Tusculanum. 39 p.

    Research output: Book/ReportPh.D. thesis

  10. Published

    Predictable waves of sequential forest degradation and biodiversity loss spreading from an African city

    Ahrends, A., Burgess, Neil David, Milledge, S. A. H., Bulling, M. T., Fisher, B., Smart, J. C. R., Clarke, G. P., Mhoro, B. E. & Jensen Lewis, M., 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 33, p. 14556-14561 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    Funding begets biodiversity

    Ahrends, A., Burgess, Neil David, Gereau, R. E., Marchant, R., Bulling, M. T., Lovett, J. C., Platts, P. J., Kindemba, V. W., Owen, N., Fanning, E. & Rahbek, Carsten, 2011, In: Diversity and Distributions. 17, 2, p. 191-200 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    Conservation and the botanist effect

    Ahrends, A., Rahbek, Carsten, Bulling, M. T., Burgess, Neil David, Platts, P. J., Lovett, J. C., Kindemba, V. W., Owen, N., Sallu, A. N., Marshall, A. R., Mhoro, B. E., Fanning, E. & Marchant, R., 2011, In: Biological Conservation. 144, 1, p. 131-140 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    Generalist ground-nesting bees dominate diversity survey in intensively managed agricultural land

    Ahrenfeldt, E. J., Kollmann, J., Madsen, Henning Bang, Skov-Petersen, Hans & Sigsgaard, L, 2019, In: Journal of Melittology. 2019, p. 1-12 82.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Bacteria in the first void urine of urethritis patients and healthy controls analysed by 454 high throughput senquencing

    Ahrens, P., Frølund, M., Abu Al-Soud, W., Wikström, A., Lidbrink, P., Cullberg, M., Sørensen, Søren Johannes & Jensen, J. S., 2012.

    Research output: Contribution to conferencePosterResearch

  15. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journalReviewpeer-review

  16. Published

    A structural biology community assessment of AlphaFold2 applications

    Akdel, M., Pires, D. E., Porta Pardo, E., Jänes, J., Zalevsky, A. O., Meszaros, B., Bryant, P., Good, L. L., Laskowski, R. A., Pozzati, G., Shenoy, A., Zhu, W., Kundrotas, P., Serra, V. R., Rodrigues, C. H. M., Dunham, A. S., Burke, D., Borkakoti, N., Velankar, S., Frost, A. & 14 others, Basquin, J., Lindorff-Larsen, Kresten, Bateman, A., Kajava, A., Valencia, A., Ovchinnikov, S., Durairaj, J., Ascher, D. B., Thornton, J. M., Davey, N. E., Stein, Amelie, Elofsson, A., Croll, T. & Beltrao, P., 2022, In: Nature Structural & Molecular Biology. 29, 11, 16 p.

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    Replacement of proteasome subunits X and Y by LMP7 and LMP2 induced by interferon-gamma for acquirement of the functional diversity responsible for antigen processing

    Akiyama, K., Kagawa, S., Tamura, T., Shimbara, N., Takashima, M., Kristensen, P., Hendil, K. B., Tanaka, K. & Ichihara, A., 1994, In: FEBS Letters. 343, p. 85-88

    Research output: Contribution to journalJournal article

  18. Published
  19. Published

    High heavy metal load does not inhibit nitrogen fixation in moss-cyanobacteria associations

    Akther, H. & Rousk, Kathrin, 2019, In: Ecotoxicology. 28, 10, p. 1169-1176 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  20. Published

    Light utilization efficiency in photosynthetic microbial mats

    Al-Naijar, M. A. A., de Beer, D., Kühl, Michael & Polerecky, L., 2012, In: Environmental Microbiology. 14, 4, p. 982-992 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    Al-Najjar, A. A., de Beer, D., Jørgensen, B. B., Kühl, Michael & Polerecky, L., 2010, In: I S M E Journal. 4, 3, p. 440-9 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published

    Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    Al-Najjar, A. A., De Beer, D., Jørgensen, B. B., Kühl, Michael & Polerecky, L., 2011, In: Nederlands Tijdschrift voor Medische Microbiologie. 19, Suppl., p. S98-S99

    Research output: Contribution to journalConference abstract in journalpeer-review

  23. Published

    Spatial patterns and links between microbial community composition and function in cyanobacterial mats

    Al-Najjar, M. A. A., Ramette, A., Kühl, Michael, Hamza, W., Klatt, J. M. & Polerecky, L., 2014, In: Frontiers in Microbiology. 5, 11 p., 406.

    Research output: Contribution to journalJournal articlepeer-review

  24. Published

    An invertebrate model for CNS drug discovery: transcriptomic and functional analysis of a mammalian P-glycoprotein ortholog

    Al-Qadi, S., Schiøtt, M., Hansen, S. H., Nielsen, P. A. & Badolo, L., 2015, In: B B A - General Subjects. 1850, 12, p. 2439-2451 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    Blepharisma intermedium Padmavathi, 1959 (Ciliophora: Heterotrichida) from Al-Hassa Inland Hypersaline Oasis in Saudi Arabia

    Al-Rasheid, K. A. S., Nilsson, J. R. & Larsen, H. F., 2001, In: Acta Protozoologica. 40, p. 63-69

    Research output: Contribution to journalJournal article