Department of Biology

 

 
  1. Published

    (Why) are island endemics interesting?

    Adsersen, Henning Emil, 2008.

    Research output: Contribution to conferencePosterResearch

  2. Published

    Essay: Har planter formål?

    Adsersen, Henning Emil, 2008, In: URT. 32, 2

    Research output: Contribution to journalJournal articleResearch

  3. Published

    Kapitel 15: Mønstre i det åbne land

    Adsersen, Henning Emil, 2007, Naturen i Danmark: Det Åbne Land. Vestergaard, P. (ed.). København: Gyldendal, p. 553-581 28 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterCommunication

  4. Published

    Tværfaglighed er en god ting

    Adsersen, Henning Emil, 2006, In: URT. 30, 1, p. 18-19 1 p.

    Research output: Contribution to journalJournal articleCommunication

  5. Published

    Om sprogblomster og blomstrende sprog

    Adsersen, Henning Emil, 2009, In: URT. 33, 3, p. 104-106

    Research output: Contribution to journalJournal articleResearch

  6. Published

    Hemikryptofytter og versefødder .... i anledning af et hundredeårsjubilæum - eller til Raunkiærs ihukommelse

    Adsersen, Henning Emil, 2007, In: URT. 31, 4, p. 153-157 5 p.

    Research output: Contribution to journalJournal articleCommunication

  7. Published

    The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

    Afgan, E., Nekrutenko, A., Grüning, B. A., Blankenberg, D., Goecks, J., Schatz, M. C., Ostrovsky, A. E., Mahmoud, A., Lonie, A. J., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A. C., Desanto, A. D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B. A. & 85 others, Langhorst, B. W., Carr, B., Raubenolt, B. A., Hyde, C. J., Bromhead, C. J., Barnett, C. B., Royaux, C., Gallardo, C., Blankenberg, D., Fornika, D. J., Baker, D., Bouvier, D., Clements, D., De Lima Morais, D. A., Tabernero, D. L., Lariviere, D., Nasr, E., Afgan, E., Zambelli, F., Heyl, F., Psomopoulos, F., Coppens, F., Price, G. R., Cuccuru, G., Corguillé, G. L., Von Kuster, G., Akbulut, G. G., Rasche, H., Hans-Rudolf, H., Eguinoa, I., Makunin, I., Ranawaka, I. J., Taylor, J. P., Joshi, J., Hillman-Jackson, J., Chilton, J. M., Kamali, K., Suderman, K., Poterlowicz, K., Yvan, L. B., Lopez-Delisle, L., Sargent, L., Bassetti, M. E., Tangaro, M. A., Van Den Beek, M., Cech, M., Bernt, M., Fahrner, M., Tekman, M., Föll, M. C., Schatz, M. C., Crusoe, M. R., Roncoroni, M., Kucher, N., Coraor, N., Stoler, N., Rhodes, N., Soranzo, N., Pinter, N., Goonasekera, N. A., Moreno, P. A., Videm, P., Melanie, P., Mandreoli, P., Jagtap, P. D., Gu, Q., Weber, R. J. M., Lazarus, R., Vorderman, R. H. P., Hiltemann, S., Golitsynskiy, S., Garg, S., Bray, S. A., Gladman, S. L., Leo, S., Mehta, S. P., Griffin, T. J., Jalili, V., Yves, V., Wen, V., Nagampalli, V. K., Bacon, W. A., De Koning, W., Maier, W. & Briggs, P. J., 2022, In: Nucleic Acids Research. 50, W1, p. W345-W351 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    COVID-19 drug practices risk antimicrobial resistance evolution

    MetaSUB Consortium, M. C., 2021, In: The Lancet Microbe. 2, 4, p. e135-e136

    Research output: Contribution to journalComment/debateResearchpeer-review

  9. Published

    Circulating Free Fatty Acid and Phospholipid Signature Predicts Early Rapid Kidney Function Decline in Patients With Type 1 Diabetes

    Afshinnia, F., Rajendiran, T. M., He, C., Byun, J., Montemayor, D., Darshi, M., Tumova, J., Kim, J., Limonte, C. P., Miller, R. G., Costacou, T., Orchard, T. J., Ahluwalia, Tarun Veer Singh, Rossing, Peter, Snell-Bergeon, J. K., de Boer, I. H., Natarajan, L., Michailidis, G., Sharma, K. & Pennathur, S., 2021, In: Diabetes Care. 44, 9, p. 2098-2106 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Estimating the spread of small invading organisms using information from the public

    Agassiz, D. J. L., Nash, David Richard, Godfray, H. C. J. & Lawton, J. H., 1994, In: Global Ecology and Biogeography Letters. 4, p. 1-8 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Forsøg med opgravning af Rynket Rose i klitterræn

    Agerlund, S. & Vestergaard, P., 2007, Rynket Rose (Rosa rugosa) i Danmark. Weidema, I., Ravn, H. P., Vestergaard, P., Johnsen, I. & Svart, H. E. (eds.). København: Museum Tusculanum, p. 72-74

    Research output: Chapter in Book/Report/Conference proceedingReport chapterResearch

  12. Published

    The transcriptional regulator GalR self-assembles to form highly regular tubular structures

    Agerschou, E. D., Christiansen, G., Schafer, N. P., Madsen, D. J., Brodersen, D. E., Semsey, S. & Otzen, D. E., 2016, In: Scientific Reports. 6, 13 p., 27672 .

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    The functional biology and trophic role of krill (Thysanoessa raschii) in a Greenlandic fjord

    Agersted, M. D., Nielsen, T. G., Munk, P., Vismann, Bent & Arendt, K. E., Jun 2011, In: Marine Biology. 158, 6, p. 1387-1402 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Conditional E2F1 activation in transgenic mice causes testicular atrophy and dysplasia mimicking human CIS.

    Agger, K., Santoni Rugiu, Eric, Holmberg, Christian, Karlström, O. & Helin, K., 2005, In: Oncogene. 24, 5, p. 780-9 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    The antibody response in serum, intestinal wall and intestinal lumen of NMRI mice infected with Echinostoma caproni

    Agger, M. K., Simonsen, P. E. & Vennervald, Birgitte J, 1993, In: Journal of Helminthology. Vol. 67, p. 169-178

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells

    Agrawal-Singh, S., Lerdrup, Mads, Gomes, A. R., van de Werken, H. J. G., Johansen, Jens Vilstrup, Andersson, Robin, Sandelin, Albin Gustav, Helin, K. & Hansen, K., 2019, In: eLife. 8, p. 1-32 32 p., e40364.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Telomeric C-circles localize at nuclear pore complexes in Saccharomyces cerevisiae

    Aguilera, P., Dubarry, M., Hardy, J., Lisby, Michael, Simon, M. & Géli, V., 2022, In: EMBO Journal. 41, 6, 14 p., e108736.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Light harvesting among photosynthetic organisms

    Agustí, S., Enríquez, S., Frost-Christensen, H., Sand-Jensen, Kaj & Duarte, C. M., 1994, In: Functional Ecology. 8, 2, p. 273-279

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Integumentary L-histidine transport in a euryhaline polychaete worm: Regulatory roles of calcium and cadmium in the transport event

    Ahearn, H. R. H., Ahearn, G. A. & Gomme, J., 2000, In: Journal of Experimental Biology. 203, p. 2877-2885

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Cadmium stimulates integumentary uptake of [3H]L-histidine in marine polychaete worms

    Ahearn, H. R. H., Ahearn, G. A. & Gomme, J., 2000, In: The FASEB Journal. 4, p. A599-A599

    Research output: Contribution to journalConference abstract in journalResearch

  22. Published

    A combined microcosm and mesocosm approach to examine factors affecting survival and mortality of Pseudomonas fluorescens Ag1 in seawater

    Ahl, T., Christoffersen, Kirsten Seestern, Riemann, B. & Nybroe, O., 1995, In: FEMS Microbiology Ecology. 17, 2, p. 107-116

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Genome wide association study of circulating interleukin 6 levels identifies novel loci

    Ahluwalia, T. S., Armstrong, N. J., Aslibekyan, S., Beekman, M., Cheng, Y., deGeus, E., Delgado, G. E., Marek, D., Kanoni, S., Nolte, I. M., Porcu, E., Seppala, I., Standl, M., Teumer, A., Thalamuthu, A., Trompet, S., Benjamin, E. J., Feitosa, M. F., Homuth, G., Lahti, J. & 30 others, Liu, Y., Timpson, N. J., Visvikis-Siest, S., Voelker, U., Baune, B. T., Boomsma, D., Deary, I. J., Evans, D. M., Ferreira, M. A., Gaunt, T., Gudnason, V., Hamsten, A., Humphries, S. E., Koeing, W., Kumari, M., Lawlor, D. A., Nauck, M., Price, J. F., Sørensen, Thorkild I.A., Stacey, D., Stathopoulou, M. G., Tanaka, T., Wannamethee, S. G., Rotter, J. I., Dehghan, A., Boerwinkle, E., Sneider, H., Psaty, B. M., Prins, B. P. & Alizadeh, B. Z., 2020, In: European Journal of Human Genetics. 28, Supplement 1, p. 307-308 2 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  24. Published

    FUT2–ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses

    Ahluwalia, T. S., Eliasen, A. U., Sevelsted, A., Pedersen, C-E. T., Stokholm, J., Chawes, B., Bork-Jensen, J., Grarup, N., Pedersen, O., Hansen, T., Linneberg, A., Sharma, A., Weiss, S. T., Evans, M. D., Jackson, D. J., Morin, A., Krogfelt, K. A., Schjørring, S., Mortensen, P. B., Hougaard, D. M. & 13 others, Bybjerg-Grauholm, J., Bækvad-Hansen, M., Mors, O., Nordentoft, Merete, Børglum, A. D., Werge, Thomas, Agerbo, E., Gern, J. E., Lemanske, R. F., Ober, C., Pedersen, A. G., Bisgaard, H. & Bønnelykke, Klaus, 2020, In: Nature Communications. 11, 12 p., 6398.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Tripartite Symbiotic Digestion of Lignocellulose in the Digestive System of a Fungus-Growing Termite

    Ahmad, F., Yang, G., Zhu, Y., Poulsen, Michael, Li, W., Yu, T. & Mo, J., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e01234-22.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Lack of the Major Multifunctional Catalase KatA in Pseudomonas aeruginosa Accelerates Evolution of Antibiotic Resistance in Ciprofloxacin-Treated Biofilms

    Ahmed, M. N., Porse, A., Abdelsamad, A., Sommer, M., Høiby, Niels & Ciofu, Oana, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 10, 12 p., e00766-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Potent Inhibitor of Human Trypsins from the Aeruginosin Family of Natural Products

    Ahmed, M. N., Wahlsten, M., Jokela, J., Nees, M., Stenman, U., Alvarenga, Danillo Oliveira, Strandin, T., Sivonen, K., Poso, A., Permi, P., Metsä-Ketelä, M., Koistinen, H. & Fewer, D. P., 2021, In: ACS chemical biology. 16, 11, p. 2537–2546 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Refinement of α-Synuclein Ensembles Against SAXS Data: Comparison of Force Fields and Methods

    Ahmed, M. C., Skaanning, L. K., Jussupow, A., Newcombe, Estella Anne, Kragelund, Birthe Brandt, Camilloni, C., Langkilde, Annette Eva & Lindorff-Larsen, Kresten, 2021, In: Frontiers in Molecular Biosciences. 8, 13 p., 654333.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Computing, Analyzing, and Comparing the Radius of Gyration and Hydrodynamic Radius in Conformational Ensembles of Intrinsically Disordered Proteins

    Ahmed, M. C., Crehuet, R. & Lindorff-Larsen, Kresten, 2020, Intrinsically Disordered Proteins: Methods and Protocols. Kragelund, B. B. & Skriver, K. (eds.). Humana Press, p. 429-445 17 p. (Methods in Molecular Biology, Vol. 2141).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  30. Published

    Structural Ensemble Refinement of Intrinsically Disordered Proteins using Experimental Data

    Ahmed, M. C. H., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 175 p.

    Research output: Book/ReportPh.D. thesisResearch

  31. Published

    How well do force fields capture the strength of salt bridges in proteins?

    Ahmed, M. C. H., Papaleo, E. & Lindorff-Larsen, Kresten, 2018, In: PeerJ. 6, 17 p., 4967.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters

    Ahmed, S., Valen, E., Sandelin, Albin Gustav & Matthews, J., 2009, In: Toxicological Sciences. 111, 2, p. 254-266

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems

    Ahmerkamp, S., Jalaluddin, F. M., Cui, Y., Brumley, D. R., Pacherres, Cesar, Berg, J. S., Stocker, R., Kuypers, M. M. M., Koren, K. & Behrendt, L., 2022, In: Cell Reports Methods. 2, 5, 18 p., 100216.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Developmental Biology of the Pancreas: Notch and BMP signalling in Pancreas Development

    Ahnfelt-Rønne, J., 2009, Biologisk Institut: Museum Tusculanum. 39 p.

    Research output: Book/ReportPh.D. thesisResearch

  35. Published

    Predictable waves of sequential forest degradation and biodiversity loss spreading from an African city

    Ahrends, A., Burgess, Neil David, Milledge, S. A. H., Bulling, M. T., Fisher, B., Smart, J. C. R., Clarke, G. P., Mhoro, B. E. & Jensen Lewis, M., 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 33, p. 14556-14561 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Funding begets biodiversity

    Ahrends, A., Burgess, Neil David, Gereau, R. E., Marchant, R., Bulling, M. T., Lovett, J. C., Platts, P. J., Kindemba, V. W., Owen, N., Fanning, E. & Rahbek, Carsten, 2011, In: Diversity and Distributions. 17, 2, p. 191-200 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Conservation and the botanist effect

    Ahrends, A., Rahbek, Carsten, Bulling, M. T., Burgess, Neil David, Platts, P. J., Lovett, J. C., Kindemba, V. W., Owen, N., Sallu, A. N., Marshall, A. R., Mhoro, B. E., Fanning, E. & Marchant, R., 2011, In: Biological Conservation. 144, 1, p. 131-140 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Generalist ground-nesting bees dominate diversity survey in intensively managed agricultural land

    Ahrenfeldt, E. J., Kollmann, J., Madsen, Henning Bang, Skov-Petersen, Hans & Sigsgaard, L, 2019, In: Journal of Melittology. 2019, p. 1-12 82.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Bacteria in the first void urine of urethritis patients and healthy controls analysed by 454 high throughput senquencing

    Ahrens, P., Frølund, M., Abu Al-Soud, W., Wikström, A., Lidbrink, P., Cullberg, M., Sørensen, Søren Johannes & Jensen, J. S., 2012.

    Research output: Contribution to conferencePosterResearch

  40. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journalReviewResearchpeer-review

  41. Published

    A structural biology community assessment of AlphaFold2 applications

    Akdel, M., Pires, D. E., Porta Pardo, E., Jänes, J., Zalevsky, A. O., Meszaros, B., Bryant, P., Good, L. L., Laskowski, R. A., Pozzati, G., Shenoy, A., Zhu, W., Kundrotas, P., Serra, V. R., Rodrigues, C. H. M., Dunham, A. S., Burke, D., Borkakoti, N., Velankar, S., Frost, A. & 14 others, Basquin, J., Lindorff-Larsen, Kresten, Bateman, A., Kajava, A., Valencia, A., Ovchinnikov, S., Durairaj, J., Ascher, D. B., Thornton, J. M., Davey, N. E., Stein, Amelie, Elofsson, A., Croll, T. & Beltrao, P., 2022, In: Nature Structural & Molecular Biology. 29, 11, 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Replacement of proteasome subunits X and Y by LMP7 and LMP2 induced by interferon-gamma for acquirement of the functional diversity responsible for antigen processing

    Akiyama, K., Kagawa, S., Tamura, T., Shimbara, N., Takashima, M., Kristensen, P., Hendil, K. B., Tanaka, K. & Ichihara, A., 1994, In: FEBS Letters. 343, p. 85-88

    Research output: Contribution to journalJournal articleResearch

  43. Published

    Clinically identified missense mutations in the Wilson Disease gene interfere with in vivo folding of ATP7B.

    Akram, Z., 2011

    Research output: Book/ReportPh.D. thesisResearch

  44. Published

    High heavy metal load does not inhibit nitrogen fixation in moss-cyanobacteria associations

    Akther, H. & Rousk, Kathrin, 2019, In: Ecotoxicology. 28, 10, p. 1169-1176 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Light utilization efficiency in photosynthetic microbial mats

    Al-Naijar, M. A. A., de Beer, D., Kühl, Michael & Polerecky, L., 2012, In: Environmental Microbiology. 14, 4, p. 982-992 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    Al-Najjar, A. A., de Beer, D., Jørgensen, B. B., Kühl, Michael & Polerecky, L., 2010, In: I S M E Journal. 4, 3, p. 440-9 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    Al-Najjar, A. A., De Beer, D., Jørgensen, B. B., Kühl, Michael & Polerecky, L., 2011, In: Nederlands Tijdschrift voor Medische Microbiologie. 19, Suppl., p. S98-S99

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  48. Published

    Spatial patterns and links between microbial community composition and function in cyanobacterial mats

    Al-Najjar, M. A. A., Ramette, A., Kühl, Michael, Hamza, W., Klatt, J. M. & Polerecky, L., 2014, In: Frontiers in Microbiology. 5, 11 p., 406.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    An invertebrate model for CNS drug discovery: transcriptomic and functional analysis of a mammalian P-glycoprotein ortholog

    Al-Qadi, S., Schiøtt, M., Hansen, S. H., Nielsen, P. A. & Badolo, L., 2015, In: B B A - General Subjects. 1850, 12, p. 2439-2451 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Blepharisma intermedium Padmavathi, 1959 (Ciliophora: Heterotrichida) from Al-Hassa Inland Hypersaline Oasis in Saudi Arabia

    Al-Rasheid, K. A. S., Nilsson, J. R. & Larsen, H. F., 2001, In: Acta Protozoologica. 40, p. 63-69

    Research output: Contribution to journalJournal articleResearch

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