Department of Biology

 

 
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  1. 2021
  2. Published

    Dairy consumption and physical fitness tests associated with fecal microbiome in a Chinese cohort

    Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Wang, X., Zhang, T., Zhou, H., Lu, H., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 9 p., 100038.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Danish wetlands remained poor with plant species 17-years after restoration

    Baumane, Marta, Zak, D. H., Riis, T., Kotowski, W., Hoffmann, C. C. & Baattrup-Pedersen, A., 2021, In: Science of the Total Environment. 798, 10 p., 149146.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    De vigtigste levesteder for rødlistede arter i Danmark

    Nygaard, B., Moeslund, J. E., Ejrnæs, R., Mielec, C. L., Carl, H., Clausen, K. K., Dylmer, E., Elmeros, M., Flensted, K., Fog, K., Goldberg, I., Hansen, M. D. D., Helsing, F., Jørum, P., Lissner, J., Læssøe, T., Madsen, H. B., Misser, J., Olsen, K., Søchting, U. & 2 others, Wiberg-Larsen, P. & Wind, P., 2021, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi. 120 p. (Videnskabelig rapport fra DCE – Nationalt Center for Miljø og Energi; No. 470).

    Research output: Book/Report › Report › Research › peer-review

  5. Published

    Declare how you are limiting your environmental impact

    Grogan, P., Buckeridge, K. M. & Priemé, Anders, 2021, In: Nature. 596, 7870, p. 35 1 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  6. Published

    Deconstructing transcriptional variations and their effects on immunomodulatory function among human mesenchymal stromal cells

    Sun, C., Zhang, K., Yue, J., Meng, S. & Zhang, X., 2021, In: Stem Cell Research & Therapy. 12, 16 p., 53.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals

    Xu, H., Zhen, Q., Bai, M., Fang, L., Zhang, Y., Li, B., Ge, H., Moon, S., Chen, W., Fu, W., Xu, Q., Zhou, Y., Yu, Y., Lin, L., Yong, L., Zhang, T., Chen, S., Liu, S., Zhang, H., Chen, R. & 8 others, Cao, L., Zhang, Y., Zhang, R., Yang, H., Hu, X., Akey, J. M., Jin, X. & Sun, L., 2021, In: Genome Research. 31, 7, p. 1150-1158 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Den fattige egn med den rige flora

    Schou, J. C. & Sand-Jensen, Kaj, 2021, In: URT. 4, p. 12-22

    Research output: Contribution to journal › Journal article › Communication

  9. Published

    Description of a new species and new records of Gerromorpha (Insecta: Hemiptera: Heteroptera) from Panama and Colombia

    Rodrigues, J. M. D. S., Crumière, A. J. J., Mondragón-F, S. P., Morales, I., Khila, A. & Moreira, F. F. F., 2021, In: Zootaxa. 4958, 1, p. 226-251 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Desensitization of human breast progenitors by a transient exposure to pregnancy levels of estrogen

    Rønnov-Jessen, Lone, Kim, Jiyoung, Goldhammer, N., Klitgaard, M. C., Smicius, M., Bechmann, M. B., Villadsen, René & Petersen, Ole William, 2021, In: Scientific Reports. 11, 7 p., 17232.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Detecting bird’s eggs in the diet of raccoon dog (Nyctereutes procyonoides)

    Bahlke, S. Ø., Nash, David Richard, Pedersen, Jes Søe, Hansen, Mette Sif, Chriél, M. & Pagh, S., 2021, In: Genetics and Biodiversity Journal. 5, 2, p. 127-139 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Detecting selection in low-coverage high-throughput sequencing data using principal component analysis

    Meisner, Jonas, Albrechtsen, Anders & Hanghøj, Kristian Ebbesen, 2021, In: BMC Bioinformatics. 22, 13 p., 470.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Development and validation of new methods for measuring predation rates in mixoplanktonic protists

    Ferreira, G. D., Calbet, A., Mansour, J. S., Not, F., Medic, Nikola, Hansen, Per Juel, Romano, F., Pitta, P., Flynn, K. J. & Mitra, A., 2021, Novel Approaches For Investigating Marine Planktonic Mixotrophy. Mitra, A., Flynn, K. J., Anestis, K., Mansour, J. S., Ferreira, G. D. & Calbet, A. (eds.). Zenodo, 69 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  14. Published

    Developmental trajectory of the healthy human gut microbiota during the first 5 years of life

    Roswall, J., Olsson, L. M., Kovatcheva-Datchary, P., Nilsson, S., Tremaroli, V., Simon, M., Kiilerich, P., Akrami, R., Kramer, M., Uhlen, M., Gummesson, A., Kristiansen, Karsten, Dahlgren, J. & Bäckhed, F., 2021, In: Cell Host & Microbe. 29, 5, p. 765-776.e3 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Dimensions of invasiveness: Links between local abundance, geographic range size, and habitat breadth in Europe's alien and native floras

    Fristoe, T. S., Chytrý, M., Dawson, W., Essl, F., Heleno, R., Kreft, H., Maurel, N., Pergl, J., Pyšek, P., Seebens, H., Weigelt, P., Vargas, P., Yang, Q., Attorre, F., Bergmeier, E., Bernhardt-Römermann, M., Biurrun, I., Boch, S., Bonari, G., Botta-Dukát, Z. & 39 others, Bruun, Hans Henrik, Byun, C., Carni, A., Carranza, M. L., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cušterevska, R., De Ronde, I., Dengler, J., Golub, V., Haveman, R., Hough-Snee, N., Jandt, U., Jansen, F., Kuzemko, A., Küzmic, F., Lenoir, J., MacAnovic, A., Marcenò, C., Martin, A. R., Michaletz, S. T., Mori, A. S., Niinemets, Ü., Peterka, T., Pielech, R., Rašomavicius, V., Rusina, S., Dias, A. S., Sibíková, M., Silc, U., Stanisci, A., Jansen, S., Svenning, J., Swacha, G., Van Der Plas, F., Vassilev, K. & Van Kleunen, M., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 22, 11 p., e2021173118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    DisCoTune: versatile auxiliary plasmids for the production of disulphide-containing proteins and peptides in the E. coli T7 system

    Bertelsen, A. B., Hackney, Celeste Menuet, Bayer, C. N., Kjelgaard, L. D., Rennig, M., Christensen, B., Sørensen, E. S., Safavi, Helena, Wulff, T., Ellgaard, Lars & Nørholm, M. H. H., 2021, In: Microbial Biotechnology. 14, 6, p. 2566-2580 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

    Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, Aken, B. L., Alam, I., Alam, T., Alasiri, R., Alhendi, A. M. N., Alinejad-Rokny, H., Alvarez, M. J., Andersson, Robin, Arakawa, T., Araki, M., Arbel, T., Lange, Jette Bornholdt, Boyd, M., Chen, Y., Coskun, M., Dalby, M., Ienasescu, H., Jørgensen, M., Kaczkowski, B., Kere, J., Li, K., Lilje, B., Nepal, C., Nguyen, Q. H., Nielsen, L. K., Rennie, Sarah, Sandelin, Albin Gustav, Valen, E., Vitezic, M., Vitting-Seerup, K. & FANTOM Consortium, F. C., 2021, In: Nature Communications. 12, 18 p., 3297.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Disease trends in a young Chinese cohort according to fecal metagenome and plasma metabolites

    Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Zhou, H., Lu, H., Wang, X., Zhang, T., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 10 p., 100037.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome Assembly

    Renelies-Hamilton, J., Germer, K., Sillam-Dussès, D., Bodawatta, Kasun Harshana & Poulsen, Michael, 2021, In: mSphere. 6, 1, 18 p., e01023-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Disorder in a two-domain neuronal Ca2+-binding protein regulates domain stability and dynamics using ligand mimicry

    Staby, L., Kemplen, K. R., Stein, Amelie, Ploug, Michael, Clarke, J., Skriver, Karen, Heidarsson, P. O. & Kragelund, Birthe Brandt, 2021, In: Cellular and molecular life sciences : CMLS. 78, p. 2263-2278 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories

    Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Divergent expression of hypoxia response systems under deoxygenation in reef-forming corals aligns with bleaching susceptibility

    Alderdice, R., Suggett, D. J., Cárdenas, A., Hughes, D. J., Kühl, Michael, Pernice, M. & Voolstra, C. R., 2021, In: Global Change Biology. 27, 2, p. 312-326 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Diversity and Evolution of Entomocorticium (Russulales, Peniophoraceae), a Genus of Bark Beetle Mutualists Derived from Free-Living, Wood Rotting Peniophora

    Araújo, J. P. M., Li, Y., Six, D., Rajchenberg, M., Smith, M. E., Johnson, A. J., Klepzig, K. D., Crous, P. W., A. Leal-Dutra, Caio, Skelton, J., Adams, S. N. & Hulcr, J., 2021, In: Journal of Fungi. 7, 12, 26 p., 1043.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Do environmental pharmaceuticals affect the composition of bacterial communities in a freshwater stream? A case study of the Knivsta river in the south of Sweden

    Hagberg, A., Gupta, S., Rzhepishevska, O., Fick, J., Burmølle, Mette & Ramstedt, M., 2021, In: Science of the Total Environment. 763, 10 p., 142991.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Don’t drink it, bury it: comparing decomposition rates with the tea bag index is possible without prior leaching

    Blume-Werry, G., Di Maurizio, V., Beil, I., Lett, Signe, Schwieger, S. & Kreyling, J., 2021, In: Plant and Soil. 465, 1-2, p. 613-621 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Draft Genome Sequence of a Polymyxin-Resistant Klebsiella pneumoniae Clinical Strain Carrying mcr-8.1 and blaNDM-5

    Pei, N., Jian, Z., Liu, Y., Liang, T., Liu, W. & Li, J., 2021, In: Microbiology resource announcements. 10, 12, 2 p., e01224-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Drier, darker and more fertile: 140 years of plant habitat change driven by land-use intensification

    Nielsen, T. F., Sand-Jensen, Kaj & Bruun, Hans Henrik, 2021, In: Journal of Vegetation Science. 32, 4, 16 p., e13066.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Drosophila TNFRs Grindelwald and Wengen bind Eiger with different affinities and promote distinct cellular functions

    Palmerini, V., Monzani, S., Laurichesse, Quentin Charles B, Loudhaief, Rihab, Mari, S., Cecatiello, V., Olieric, V., Pasqualato, S., Colombani, Julien, Andersen, Ditte Skovaa & Mapelli, M., 2021, In: Nature Communications. 12, 12 p., 2070.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Dual skin functions in amphibian osmoregulation

    Larsen, Erik Hviid, 2021, In: Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology. 253, p. 1-8 8 p., 110869.

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Dynamic Na+/H+ exchanger 1 (NHE1) - calmodulin complexes of varying stoichiometry and structure regulate Ca2+-dependent NHE1 activation

    Sjøgaard-Frich, Lise Margrethe, Prestel, Andreas, Pedersen, E. S., Severin, M., Kristensen, Kristian Kølby, Olsen, Johan Gotthardt, Kragelund, Birthe Brandt & Pedersen, Stine Helene Falsig, 2021, In: eLife. 10, 29 p., e60889.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Dynamic evolution of transposable elements, demographic history, and gene content of paleognathous birds

    Wang, Z., Chen, G., KU, thw266 & Zhou, Q., 2021, In: Zoological Research. 42, 1, p. 51-61 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Dynamics of Baltic Sea phages driven by environmental changes

    Hoetzinger, M., Nilsson, E., Arabi, R., Osbeck, C. M. G., Pontiller, B., Hutinet, G., Bayfield, O. W., Traving, S., Kisand, V., Lundin, D., Pinhassi, J., Middelboe, Mathias & Holmfeldt, K., 2021, In: Environmental Microbiology. 23, 8, p. 4576-4594 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Dynamics of volatile organic compounds in a western Mediterranean oak forest

    Yáñez-serrano, A. M., Bach, A., Bartolomé-català, D., Matthaios, V., Seco, Roger, Llusia, J., Filella, I. & Peñuelas, J., 2021, In: Atmospheric Environment. 257, 118447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments

    Hassoun-Kheir, N., Stabholz, Y., Kreft, J-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J., Hough, R. & 1 others, Paul, M., 2021, In: One Health. 13, 9 p., 100339.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Eco-physiology of prey generalist mixoplanktonic ciliates

    Maselli, Maira, 2021, Department of Biology, Faculty of Science, University of Copenhagen. 228 p.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    Ecological condition, biodiversity and major environmental challenges in a tropical river network in the Bago District in South-central Myanmar: First insights to the unknown

    Eriksen, T. E., Friberg, N., Brittain, J. E., Søli, G., Ballot, A., Årstein-Eriksen, E., Blakseth, T. A. & Veiteberg Braaten, H. F., 2021, In: Limnologica. 86, 12 p., 125835.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Ecology impacts the decrease of Spirochaetes and Prevotella in the fecal gut microbiota of urban humans

    Thingholm, L. B., Bang, C., Rühlemann, M. C., Starke, A., Sicks, F., Kaspari, V., Jandowsky, A., Froelich, K., Ismer, G., Bernhard, A., Bombis, C., Struve, B., Rausch, P. & Franke, A., 2021, In: BMC Microbiology. 21, 20 p., 276.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Ecology of Arctic Lakes and Ponds

    Jeppesen, E., Christoffersen, Kirsten Seestern, Rautio, M. & Lauridsen, T. L., 2021, Arctic Ecology. Thomas, D. N. (ed.). Wiley-Blackwell, p. 159-180 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  39. Published

    Ectoparasitic fungi of Myrmica ants alter the success of parasitic butterflies

    Tartally, A., Szabó, N., Somogyi, A. Á., Báthori, F., Haelewaters, D., Mucsi, A., Fürjes-Mikó, Á. & Nash, David Richard, 2021, In: Scientific Reports. 11, 13 p., 24031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Effects of dispersal strategy and migration history on genetic diversity and population structure of Antarctic lichens

    Lagostina, E., Andreev, M., Dal Grande, F., Grewe, F., Lorenz, A., Lumbsch, H. T., Rozzi, R., Ruprecht, U., Sancho, L. G., Søchting, Ulrik, Scur, M., Wirtz, N. & Printzen, C., 2021, In: Journal of Biogeography. 48, 7, p. 1635-1653 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Effects of flooding stress on the saltmarsh halophyte Salicornia fruticosa (L.) L. upscaling perspectives

    Vuerich, M., Cingano, P., Petrussa, E., Braidot, E., Pellegrini, Elisa, Mestroni, M. & Boscutti, F., 2021, p. 97. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  42. Published

    Effects of insect herbivory and changing climate on biogenic volatile organic compound emissions in the Arctic

    Rieksta, Jolanta, 2021, Department of Biology, Faculty of Science, University of Copenhagen. 135 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Effects of latitude and conspecific plant density on insect leaf herbivory in oak saplings and seedlings

    Moreira, X., Abdala-Roberts, L., De Frenne, P., Galmán, A., Gaytán, Á., Jaatinen, R., Lago-Núñez, B., Meeussen, C., Pulkkinen, P., Rasmussen, P. U., Ten Hoopen, J. P. J. G., Timmermans, B. G. H., Vázquez-González, C., Bos, N., Castagneyrol, B. & Tack, A. J. M., 2021, In: American Journal of Botany. 108, 1, p. 172-176 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Effects of x-ray free-electron laser pulse intensity on the Mn Kβ1,3 x-ray emission spectrum in photosystem II-A case study for metalloprotein crystals and solutions

    Fransson, T., Alonso-Mori, R., Chatterjee, R., Cheah, M. H., Ibrahim, M., Hussein, R., Zhang, M., Fuller, F., Gul, S., Kim, I-S., Simon, P. S., Bogacz, I., Makita, H., De Lichtenberg, C., Song, S., Batyuk, A., Sokaras, D., Massad, R., Doyle, M., Britz, A. & 7 others, Weninger, C., Zouni, A., Messinger, J., Yachandra, V. K., Yano, J., Kern, J. & Bergmann, U., 2021, In: Structural Dynamics. 8, 6, 14 p., 064302.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Effekten af tømidler på biodiversitet i jord

    Severin, M., Ingerslev, Morten & Ekelund, Flemming, 2021, Institut for Geovidenskab og Naturforvaltning, Københavns Universitet. (Videnblade Park og Landskab; No. 05.23-13).

    Research output: Book/Report › Report › Communication

  46. Published

    Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model

    Thygesen, Christian Bahne, Al-Sibahi, A. S., Steenmanns, C. S., Sanz Moreta, Lys, Sørensen, A. B. & Hamelryck, Thomas Wim, 2021, International Conference on Machine Learning, 18-24 July 2021, Virtual. PMLR, p. 10258-10267 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  47. Published

    Efficient Production of Pyruvate Using Metabolically Engineered Lactococcus lactis

    Suo, F., Liu, J., Chen, J., Li, Xuan Ji, Solem, C. & Jensen, P. R., 2021, In: Frontiers in Bioengineering and Biotechnology. 8, 12 p., 611701.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Elusive cats in our backyards: persistence of the North Chinese leopard (Panthera pardus japonensis) in a human-dominated landscape in central China

    Yang, H., Xie, Bing, Zhao, G., Gong, Y., Mou, P., Ge, J. & Feng, L., 2021, In: Integrative Zoology. 16, 1, p. 67-83 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Emergence and radiation of distemper viruses in terrestrial and marine mammals

    Stokholm, Iben, Puryear, W., Sawatzki, K., Knudsen, Steen Wilhelm, Terkelsen, Thilde Bagger, Becher, P., Siebert, U. & Olsen, Morten Tange, 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1961, 9 p., 20211969.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

    Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    En ny dansk hvepsebi Nomada bifasciata Olivier, 1811 og andre bemærkelsesværdige bier fundet på Ærø (Hymenoptera, Apoidea, Apiformes)

    Madsen, Henning Bang, Poulsen, K. R., Rasmussen, C. & Schmidt, H. T., 2021, In: Entomologiske Meddelelser. 88, 1-2, p. 23-29

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Endocrine regulation of immunity in insects

    Nunes, C., Sucena, É. & Koyama, Takashi, 2021, In: FEBS Journal. 288, 13, p. 3928-3947 20 p.

    Research output: Contribution to journal › Review › Research › peer-review

  53. Published

    Energy Starvation Induces a Cell Cycle Arrest in Escherichia coli by Triggering Degradation of the DnaA Initiator Protein

    Charbon, Godefroid, Mendoza-Chamizo, B., Campion, C., Li, X., Jensen, P. R., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Frontiers in Molecular Biosciences. 8, 9 p., 629953.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning

    Xiang, X., Corsi, G. I., Anthon, C., Qu, K., Pan, X., Liang, X., Han, P., Dong, Z., Liu, L., Zhong, J., Ma, T., Wang, J., Zhang, X., Jiang, H., Xu, F., Liu, X., Xu, X., Wang, J., Yang, H., Bolund, L. & 4 others, Church, G. M., Lin, L., Gorodkin, Jan & Luo, Y., 2021, In: Nature Communications. 12, 1, 9 p., 3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

    Koehler Leman, J., Lyskov, S., Lewis, S. M., Adolf-Bryfogle, J., Alford, R. F., Barlow, K., Ben-Aharon, Z., Farrell, D., Fell, J., Hansen, W. A., Harmalkar, A., Jeliazkov, J., Kuenze, G., Krys, J. D., Ljubetič, A., Loshbaugh, A. L., Maguire, J., Moretti, R., Mulligan, V. K., Nance, M. L. & 30 others, Nguyen, P. T., Ó Conchúir, S., Roy Burman, S. S., Samanta, R., Smith, S. T., Teets, F., Tiemann, Johanna Katarina Sofie, Watkins, A., Woods, H., Yachnin, B. J., Bahl, C. D., Bailey-Kellogg, C., Baker, D., Das, R., DiMaio, F., Khare, S. D., Kortemme, T., Labonte, J. W., Lindorff-Larsen, Kresten, Meiler, J., Schief, W., Schueler-Furman, O., Siegel, J. B., Stein, Amelie, Yarov-Yarovoy, V., Kuhlman, B., Leaver-Fay, A., Gront, D., Gray, J. J. & Bonneau, R., 2021, In: Nature Communications. 12, 15 p., 6947.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Environmental and Pathogenic Carbapenem Resistant Bacteria Isolated from a Wastewater Treatment Plant Harbour Distinct Antibiotic Resistance Mechanisms

    Oliveira, M., Leonardo, I. C., Nunes, M., Silva, A. F. & Barreto Crespo, M. T., 2021, In: Antibiotics. 10, 9, 13 p., 1118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Errantia incertae sedis: Nerillidae Levinsen, 1883

    Worsaae, Katrine, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 215-228 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  58. Published

    Evaluating competition for forage plants between honey bees and wild bees in Denmark

    Rasmussen, C., Dupont, Y. L., Madsen, Henning Bang, Bogusch, P., Goulson, D., Herbertsson, L., Maia, K. P., Nielsen, A., Olesen, J. M., Potts, S. G., Roberts, S. P. M., Kjær Sydenham, M. A. & Kryger, P., 2021, In: PLoS ONE. 16, 4, 19 p., e0250056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Evidence for large microbial-mediated losses of soil carbon under anthropogenic warming

    García-Palacios, P., Crowther, T. W., Dacal, M., Hartley, I. P., Reinsch, S., Rinnan, Riikka, Rousk, J., van den Hoogen, J., Ye, J. & Bradford, M. A., 2021, In: Nature Reviews Earth & Environment. 2, 7, p. 507-517

    Research output: Contribution to journal › Review › Research › peer-review

  60. Published

    Evolution of A bHLH Interaction Motif

    Millard, P. S., Kragelund, Birthe Brandt & Burow, Meike, 2021, In: International Journal of Molecular Sciences. 22, 1, 18 p., 447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Evolutionary and biomedical insights from a marmoset diploid genome assembly

    Yang, C., Zhou, Y., Marcus, S., Formenti, G., Bergeron, L. A., Song, Z., Bi, X., Bergman, J., Rousselle, M. M. C., Zhou, C., Zhou, L., Deng, Y., Fang, M., Xie, D., Zhu, Y., Tan, S., Mountcastle, J., Haase, B., Balacco, J., Wood, J. & 13 others, Chow, W., Rhie, A., Pippel, M., Fabiszak, M. M., Koren, S., Fedrigo, O., Freiwald, W. A., Howe, K., Yang, H., Phillippy, A. M., Schierup, M. H., Jarvis, E. D. & KU, thw266, 2021, In: Nature. 594, p. 227-233

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Evolutionary history of the extinct Sardinian dhole

    Ciucani, M. M., Jensen, J. K., Sinding, M. S., Smith, O., Lucenti, S. B., Rosengren, E., Rook, L., Tuveri, C., Arca, M., Cappellini, Enrico, Galaverni, M., Randi, E., Guo, C., KU, thw266, Sicheritz-Pontén, Thomas, Dalén, L., Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2021, In: Current Biology. 31, 24, p. 5571-5579.e6 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Evolutionary history of the roan antelope across its African range

    Gonçalves, M., Siegismund, Hans Redlef, van Vuuren, B. J., Ferrand, N. & Godinho, R., 2021, In: Journal of Biogeography. 48, 11, p. 2812-2827 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Excretion from the benthic macrofauna covers little of spring nutrient uptake in a small Danish forest stream

    Lindenskov, R. & Jacobsen, Dean, 2021, In: Inland Waters. 11, 3, p. 396-403 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Expansion of the barnacle Austrominius modestus (Darwin, 1854) (Cirripedia, Thoracica, Balanidae) into Scandinavian waters based on collection data and niche distribution modeling

    Glenner, Henrik, Lützen, J., Pacheco-Riaño, L. C. & Noever, C., 2021, In: Aquatic Invasions. 16, 4, p. 675-689 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Explicitly modelling microtopography in permafrost landscapes in a land-surface model (JULES vn5.4_microtopography)

    Smith, N. D., Chadburn, S. E., Burke, E. J., Aas, K. S., Althuizen, I. H. J., Boike, J., Christiansen, C. T., Etzelmüller, B., Friborg, Thomas, Lee, H., Rumbold, H., Turton, R. & Westermann, S., 2021, 43 p.

    Research output: Working paper › Preprint › Research

  67. Published

    Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

    Li, L., Nesme, Joseph, Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Extension of Plant Phenotypes by the Foliar Microbiome

    Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Female-biased sex allocation and lack of inbreeding avoidance in Cubitermes termites

    Sinotte, Veronica Marie, Conlon, B. H., Seibel, E., Schwitalla, J. W., de Beer, Z. W., Poulsen, Michael & Bos, N., 2021, In: Ecology and Evolution. 11, 10, p. 5598-5605 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Fine-structural characterization and phylogeny of Sphaerodinium (Suessiales, Dinophyceae), with the description of an unusual type of freshwater dinoflagellate cyst

    Pandeirada, M. S., Craveiro, S. C., Daugbjerg, Niels, Moestrup, Øjvind & Calado, A. J., 2021, In: European Journal of Protistology. 78, 21 p., 125770.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Fitting Side-Chain NMR Relaxation Data Using Molecular Simulations

    Kümmerer, Felix, Orioli, S., Harding-Larsen, D., Hoffmann, F., Gavrilov, Y., Teilum, Kaare & Lindorff-Larsen, Kresten, 2021, In: Journal of Chemical Theory and Computation. 17, 8, p. 5262-5275 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Five hundred million years to mobility: directed locomotion and its ecological function in a turtle barnacle

    Chan, B. K. K., Wong, Y. H., Robinson, N. J., Lin, J., Yu, S., Dreyer, N., Cheng, I., Høeg, Jens Thorvald & Zardus, J. D., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1960, 10 p., 20211620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Fjords and climate change

    Juul-Pedersen, T., Winding, M. H. S., Sejr, M. K. & Hansen, Per Juel, 2021, Greenland Ecosystem Monitoring Annual Report Cards 2020. Christensen, T. B., Arndal, M. F. & Topp-Jørgensen, E. (eds.). Aarhus University, DCE – Danish Centre for Environment and Energy, p. 8-9 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  74. Published

    Flanking Disorder of the Folded αα-Hub Domain from Radical Induced Cell Death1 Affects Transcription Factor Binding by Ensemble Redistribution: Flanking disorder tunes the RCD1-RST ensemble

    Staby, L., Due, Amanda Duncan, Kunze, M. B. A., Jørgensen, M. L. M., Skriver, Karen & Kragelund, Birthe Brandt, 2021, In: Journal of Molecular Biology. 433, 24, 15 p., 167320.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Flash properties of Gaussia luciferase are the result of covalent inhibition after a limited number of cycles

    Dijkema, F. M., Nordentoft, M. K., Didriksen, A. K., Corneliussen, A. S., Willemoës, Martin & Winther, Jakob R., 2021, In: Protein Science. 30, 3, p. 638-649 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

    Bodawatta, Kasun Harshana, Freiberga, I., Puzejova, K., Sam, K., Poulsen, Michael & Jønsson, Knud Andreas, 2021, In: BMC Animal Microbiome. 3, 14 p., 20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Follow the leader? Orange-fronted conures eavesdrop on conspecific vocal performance and utilise it in social decisions

    Thomsen, Heidi Maria, Balsby, T. J. S. & Dabelsteen, Torben, 2021, In: PLoS ONE. 16, 6, 22 p., e0252374.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Food Webs and Fish Size Patterns in Insular Lakes Partially Support Climate-Related Features in Continental Lakes

    Vidal, N., Amsinck, S. L., Gonçalves, V., Neto Azevedo, J. M., Johansson, L. S., Christoffersen, Kirsten Seestern, Lauridsen, T. L., Søndergaard, M., Bjerring, R., Landkildehus, F., Brodersen, K. P., Meerhoff, M. & Jeppesen, E., 2021, In: Water (Switzerland). 13, 10, 20 p., 1380.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Force Field Effects in Simulations of Flexible Peptides with Varying Polyproline II Propensity

    Jephthah, S., Pesce, Francesco, Lindorff-Larsen, Kresten & Skepö, M., 2021, In: Journal of Chemical Theory and Computation. 17, 10, p. 6634-6646 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Forested Riparian Zones Provide Important Habitat for Fish in Urban Streams

    Kupilas, B., Burdon, F. J., Thaulow, J., Håll, J., Mutinova, P. T., Forio, M. A. E., Witing, F., Rîșnoveanu, G., Goethals, P., McKie, Brendan Gerard & Friberg, N., 2021, In: Water. 13, 6, 19 p., 877.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Four-decade dynamics of the water color in 61 large lakes on the Yangtze Plain and the impacts of reclaimed aquaculture zones

    Xu, Yang, Feng, L., Hou, X., Wang, J. & Tang, Jing, 2021, In: Science of the Total Environment. 781, 14 p., 146688.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Frequency and phenotypic characteristics of RPE65 mutations in the Chinese population

    Gao, F., Wang, D., Li, J., Hu, F., Xu, P., Chen, F., Qi, Y., Liu, W., Li, W., Zhang, S., Chang, Q., Xu, G. & Wu, J., 2021, In: Orphanet Journal of Rare Diseases. 16, 9 p., 174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Frustule Photonics and Light Harvesting Strategies in Diatoms

    Goessling, J. W., Su, Y., Kühl, Michael & Ellegaard, Marianne, 2021, Diatom Morphogenesis. Wiley, p. 269-300 32 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  84. Published

    Functional Feeding Groups of Macrofauna and Detritus Decomposition along a Gradient of Glacial Meltwater Influence in Tropical High-Andean Streams

    Andino, P., Espinosa, R., Crespo-Pérez, V., Cauvy-Fraunié, S., Dangles, O. & Jacobsen, Dean, 2021, In: Water. 13, 22, 16 p., 3303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Functions of TopBP1 in preserving genome integrity during mitosis

    Bagge, J., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2021, In: Seminars in Cell and Developmental Biology. 113, p. 57-64 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  86. Published

    GEM MarineBasis – Programme description

    Sejr, M. K., Winding, M. H. S., Juul-Pedersen, T., Hansen, Per Juel & Nielsen, T. G., 2021, Greenland Ecosystem Monitoring Annual Report Cards 2020. Christensen, T. R., Arndal, M. F. & Topp-Jørgensen, E. (eds.). Aarhus University, DCE – Danish Centre for Environment and Energy, p. 40-41 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  87. Published

    GLOVOCS - Master compound assignment guide for proton transfer reaction mass spectrometry users

    Yáñez-Serrano, A. M., Filella, I., LLusià, J., Gargallo-Garriga, A., Granda, V., Bourtsoukidis, E., Williams, J., Seco, Roger, Cappellin, L., Werner, C., de Gouw, J. & Peñuelas, J., 2021, In: Atmospheric Environment. 244, 4 p., 117929.

    Research output: Contribution to journal › Letter › Research › peer-review

  88. Published

    GNPS-guided discovery of xylacremolide C and D, evaluation of their putative biosynthetic origin and bioactivity studies of xylacremolide A and B

    Schalk, F., Fricke, J., Um, S., Conlon, B. H., Maus, H., Jäger, N., Heinzel, T., Schirmeister, T., Poulsen, Michael & Beemelmanns, C., 2021, In: RSC Advances. 31, 11, p. 18748-18756 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Genome editing in archaeal viruses and endogenous viral protein purification

    Alfastsen, L., Peng, Xu & Bhoobalan, Yuvaraj, 2021, In: STAR Protocols. 2, 4, 27 p., 100791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Genome reduction and relaxed selection is associated with the transition to symbiosis in the basidiomycete genus Podaxis

    Conlon, B. H., Gostinčar, C., Fricke, J., Kreuzenbeck, N. B., Daniel, J., Schlosser, M. S. L., Peereboom, N., Aanen, D. K., de Beer, Z. W., Beemelmanns, C., Gunde-Cimerman, N. & Poulsen, Michael, 2021, In: iScience. 24, 6, 20 p., 102680.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Genome-wide analyses across Viridiplantae reveal the origin and diversification of small RNA pathway-related genes

    Wang, S., Liang, H., Xu, Y., Li, L., Wang, H., Sahu, D. N., Petersen, Morten, Melkonian, M., Sahu, S. K. & Liu, Huan, 2021, In: Communications Biology . 4, 11 p., 412.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq

    Petryk, N., Reveron-Gomez, Nazaret, González-Aguilera, C., Dalby, M., Andersson, Robin & Groth, Anja, 2021, In: Nature Protocols. 16, p. 4446-4493

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Genomic Analysis of Pasteurella atlantica Provides Insight on Its Virulence Factors and Phylogeny and Highlights the Potential of Reverse Vaccinology in Aquaculture

    Ellul, R. M., Kalatzis, Panagiotis, Frantzen, C., Haugland, G. T., Gulla, S., Colquhoun, D. J., Middelboe, Mathias, Wergeland, H. I. & Rønneseth, A., 2021, In: Microorganisms. 9, 6, 22 p., 1215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico

    Murphy, Rob, Palm, M., Mustonen, V., Warringer, J., Farewell, A., Parts, L. & Moradigaravand, D., 2021, In: mSphere. 6, 1, 15 p., e00738-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Genomic Stability and Phenotypic Characteristics of Industrially Produced Lacticaseibacillus rhamnosus GG in a Yogurt Matrix

    Strickertsson, Marianne Stage, Hui, Y., Nielsen, Dennis Sandris, Vera-Jimenéz, N. I., Olsen, J., Sandelin, Albin Gustav & Wichmann, A., 2021, In: Applied and Environmental Microbiology. 87, 24, 18 p., e01575-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

    von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Geographical sampling bias on the assessment of endemism areas for marine meiobenthic fauna

    Garraffoni, A., Sørensen, Martin Vinther, Worsaae, Katrine, Di Domenico, M., Sales, L. P., Santos, J. & Lourenço, A., 2021, In: Cladistics. 37, 5, p. 571-585 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Geomorphology and vegetation drive hydrochemistry changes in two Northeast Greenland streams

    Pastor, A., Skovsholt, L. J., Christoffersen, Kirsten Seestern, Wu, N. & Riis, T., 2021, In: Hydrological Processes. 35, 10, 14 p., e14369.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Gill Transcriptomic Responses to Toxin-producing Alga Prymnesium parvum in Rainbow Trout

    Clinton, M., Krol, E., Sepúlveda, D., Andersen, N. R., Brierley, A. S., Ferrier, D. E. K., Hansen, Per Juel, Lorenzen, N. & Martin, S. A. M., 2021, In: Frontiers in Immunology. 12, 17 p., 794593.

    Research output: Contribution to journal › Journal article › Research › peer-review

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