Department of Biology

 

 
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  1. 2021
  2. Published

    Endocrine regulation of immunity in insects

    Nunes, C., Sucena, É. & Koyama, Takashi, 2021, In: FEBS Journal. 288, 13, p. 3928-3947 20 p.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Energy Starvation Induces a Cell Cycle Arrest in Escherichia coli by Triggering Degradation of the DnaA Initiator Protein

    Charbon, Godefroid, Mendoza-Chamizo, B., Campion, C., Li, X., Jensen, P. R., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Frontiers in Molecular Biosciences. 8, 9 p., 629953.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning

    Xiang, X., Corsi, G. I., Anthon, C., Qu, K., Pan, X., Liang, X., Han, P., Dong, Z., Liu, L., Zhong, J., Ma, T., Wang, J., Zhang, X., Jiang, H., Xu, F., Liu, X., Xu, X., Wang, J., Yang, H., Bolund, L. & 4 others, Church, G. M., Lin, L., Gorodkin, Jan & Luo, Y., 2021, In: Nature Communications. 12, 1, 9 p., 3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

    Koehler Leman, J., Lyskov, S., Lewis, S. M., Adolf-Bryfogle, J., Alford, R. F., Barlow, K., Ben-Aharon, Z., Farrell, D., Fell, J., Hansen, W. A., Harmalkar, A., Jeliazkov, J., Kuenze, G., Krys, J. D., Ljubetič, A., Loshbaugh, A. L., Maguire, J., Moretti, R., Mulligan, V. K., Nance, M. L. & 30 others, Nguyen, P. T., Ó Conchúir, S., Roy Burman, S. S., Samanta, R., Smith, S. T., Teets, F., Tiemann, Johanna Katarina Sofie, Watkins, A., Woods, H., Yachnin, B. J., Bahl, C. D., Bailey-Kellogg, C., Baker, D., Das, R., DiMaio, F., Khare, S. D., Kortemme, T., Labonte, J. W., Lindorff-Larsen, Kresten, Meiler, J., Schief, W., Schueler-Furman, O., Siegel, J. B., Stein, Amelie, Yarov-Yarovoy, V., Kuhlman, B., Leaver-Fay, A., Gront, D., Gray, J. J. & Bonneau, R., 2021, In: Nature Communications. 12, 15 p., 6947.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Environmental and Pathogenic Carbapenem Resistant Bacteria Isolated from a Wastewater Treatment Plant Harbour Distinct Antibiotic Resistance Mechanisms

    Oliveira, M., Leonardo, I. C., Nunes, M., Silva, A. F. & Barreto Crespo, M. T., 2021, In: Antibiotics. 10, 9, 13 p., 1118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Errantia incertae sedis: Nerillidae Levinsen, 1883

    Worsaae, Katrine, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 215-228 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    Evaluating competition for forage plants between honey bees and wild bees in Denmark

    Rasmussen, C., Dupont, Y. L., Madsen, Henning Bang, Bogusch, P., Goulson, D., Herbertsson, L., Maia, K. P., Nielsen, A., Olesen, J. M., Potts, S. G., Roberts, S. P. M., Kjær Sydenham, M. A. & Kryger, P., 2021, In: PLoS ONE. 16, 4, 19 p., e0250056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Evidence for large microbial-mediated losses of soil carbon under anthropogenic warming

    García-Palacios, P., Crowther, T. W., Dacal, M., Hartley, I. P., Reinsch, S., Rinnan, Riikka, Rousk, J., van den Hoogen, J., Ye, J. & Bradford, M. A., 2021, In: Nature Reviews Earth & Environment. 2, 7, p. 507-517

    Research output: Contribution to journal › Review › Research › peer-review

  10. Published

    Evolution of A bHLH Interaction Motif

    Millard, P. S., Kragelund, Birthe Brandt & Burow, Meike, 2021, In: International Journal of Molecular Sciences. 22, 1, 18 p., 447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Evolutionary and biomedical insights from a marmoset diploid genome assembly

    Yang, C., Zhou, Y., Marcus, S., Formenti, G., Bergeron, L. A., Song, Z., Bi, X., Bergman, J., Rousselle, M. M. C., Zhou, C., Zhou, L., Deng, Y., Fang, M., Xie, D., Zhu, Y., Tan, S., Mountcastle, J., Haase, B., Balacco, J., Wood, J. & 13 others, Chow, W., Rhie, A., Pippel, M., Fabiszak, M. M., Koren, S., Fedrigo, O., Freiwald, W. A., Howe, K., Yang, H., Phillippy, A. M., Schierup, M. H., Jarvis, E. D. & KU, thw266, 2021, In: Nature. 594, p. 227-233

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Evolutionary history of the extinct Sardinian dhole

    Ciucani, M. M., Jensen, J. K., Sinding, M. S., Smith, O., Lucenti, S. B., Rosengren, E., Rook, L., Tuveri, C., Arca, M., Cappellini, Enrico, Galaverni, M., Randi, E., Guo, C., KU, thw266, Sicheritz-Pontén, Thomas, Dalén, L., Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2021, In: Current Biology. 31, 24, p. 5571-5579.e6 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Evolutionary history of the roan antelope across its African range

    Gonçalves, M., Siegismund, Hans Redlef, van Vuuren, B. J., Ferrand, N. & Godinho, R., 2021, In: Journal of Biogeography. 48, 11, p. 2812-2827 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Excretion from the benthic macrofauna covers little of spring nutrient uptake in a small Danish forest stream

    Lindenskov, R. & Jacobsen, Dean, 2021, In: Inland Waters. 11, 3, p. 396-403 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Expansion of the barnacle Austrominius modestus (Darwin, 1854) (Cirripedia, Thoracica, Balanidae) into Scandinavian waters based on collection data and niche distribution modeling

    Glenner, Henrik, Lützen, J., Pacheco-Riaño, L. C. & Noever, C., 2021, In: Aquatic Invasions. 16, 4, p. 675-689 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Explicitly modelling microtopography in permafrost landscapes in a land-surface model (JULES vn5.4_microtopography)

    Smith, N. D., Chadburn, S. E., Burke, E. J., Aas, K. S., Althuizen, I. H. J., Boike, J., Christiansen, C. T., Etzelmüller, B., Friborg, Thomas, Lee, H., Rumbold, H., Turton, R. & Westermann, S., 2021, 43 p.

    Research output: Working paper › Preprint › Research

  17. Published

    Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

    Li, L., Nesme, Joseph, Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Extension of Plant Phenotypes by the Foliar Microbiome

    Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Female-biased sex allocation and lack of inbreeding avoidance in Cubitermes termites

    Sinotte, Veronica Marie, Conlon, B. H., Seibel, E., Schwitalla, J. W., de Beer, Z. W., Poulsen, Michael & Bos, N., 2021, In: Ecology and Evolution. 11, 10, p. 5598-5605 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Fine-structural characterization and phylogeny of Sphaerodinium (Suessiales, Dinophyceae), with the description of an unusual type of freshwater dinoflagellate cyst

    Pandeirada, M. S., Craveiro, S. C., Daugbjerg, Niels, Moestrup, Øjvind & Calado, A. J., 2021, In: European Journal of Protistology. 78, 21 p., 125770.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Fitting Side-Chain NMR Relaxation Data Using Molecular Simulations

    Kümmerer, Felix, Orioli, S., Harding-Larsen, D., Hoffmann, F., Gavrilov, Y., Teilum, Kaare & Lindorff-Larsen, Kresten, 2021, In: Journal of Chemical Theory and Computation. 17, 8, p. 5262-5275 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Five hundred million years to mobility: directed locomotion and its ecological function in a turtle barnacle

    Chan, B. K. K., Wong, Y. H., Robinson, N. J., Lin, J., Yu, S., Dreyer, N., Cheng, I., Høeg, Jens Thorvald & Zardus, J. D., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1960, 10 p., 20211620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Fjords and climate change

    Juul-Pedersen, T., Winding, M. H. S., Sejr, M. K. & Hansen, Per Juel, 2021, Greenland Ecosystem Monitoring Annual Report Cards 2020. Christensen, T. B., Arndal, M. F. & Topp-Jørgensen, E. (eds.). Aarhus University, DCE – Danish Centre for Environment and Energy, p. 8-9 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  24. Published

    Flanking Disorder of the Folded αα-Hub Domain from Radical Induced Cell Death1 Affects Transcription Factor Binding by Ensemble Redistribution: Flanking disorder tunes the RCD1-RST ensemble

    Staby, L., Due, Amanda Duncan, Kunze, M. B. A., Jørgensen, M. L. M., Skriver, Karen & Kragelund, Birthe Brandt, 2021, In: Journal of Molecular Biology. 433, 24, 15 p., 167320.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Flash properties of Gaussia luciferase are the result of covalent inhibition after a limited number of cycles

    Dijkema, F. M., Nordentoft, M. K., Didriksen, A. K., Corneliussen, A. S., Willemoës, Martin & Winther, Jakob R., 2021, In: Protein Science. 30, 3, p. 638-649 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

    Bodawatta, Kasun Harshana, Freiberga, I., Puzejova, K., Sam, K., Poulsen, Michael & Jønsson, Knud Andreas, 2021, In: BMC Animal Microbiome. 3, 14 p., 20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Follow the leader? Orange-fronted conures eavesdrop on conspecific vocal performance and utilise it in social decisions

    Thomsen, Heidi Maria, Balsby, T. J. S. & Dabelsteen, Torben, 2021, In: PLoS ONE. 16, 6, 22 p., e0252374.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Food Webs and Fish Size Patterns in Insular Lakes Partially Support Climate-Related Features in Continental Lakes

    Vidal, N., Amsinck, S. L., Gonçalves, V., Neto Azevedo, J. M., Johansson, L. S., Christoffersen, Kirsten Seestern, Lauridsen, T. L., Søndergaard, M., Bjerring, R., Landkildehus, F., Brodersen, K. P., Meerhoff, M. & Jeppesen, E., 2021, In: Water (Switzerland). 13, 10, 20 p., 1380.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Force Field Effects in Simulations of Flexible Peptides with Varying Polyproline II Propensity

    Jephthah, S., Pesce, Francesco, Lindorff-Larsen, Kresten & Skepö, M., 2021, In: Journal of Chemical Theory and Computation. 17, 10, p. 6634-6646 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Forested Riparian Zones Provide Important Habitat for Fish in Urban Streams

    Kupilas, B., Burdon, F. J., Thaulow, J., Håll, J., Mutinova, P. T., Forio, M. A. E., Witing, F., Rîșnoveanu, G., Goethals, P., McKie, Brendan Gerard & Friberg, N., 2021, In: Water. 13, 6, 19 p., 877.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Four-decade dynamics of the water color in 61 large lakes on the Yangtze Plain and the impacts of reclaimed aquaculture zones

    Xu, Yang, Feng, L., Hou, X., Wang, J. & Tang, Jing, 2021, In: Science of the Total Environment. 781, 14 p., 146688.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Frequency and phenotypic characteristics of RPE65 mutations in the Chinese population

    Gao, F., Wang, D., Li, J., Hu, F., Xu, P., Chen, F., Qi, Y., Liu, W., Li, W., Zhang, S., Chang, Q., Xu, G. & Wu, J., 2021, In: Orphanet Journal of Rare Diseases. 16, 9 p., 174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Frustule Photonics and Light Harvesting Strategies in Diatoms

    Goessling, J. W., Su, Y., Kühl, Michael & Ellegaard, Marianne, 2021, Diatom Morphogenesis. Wiley, p. 269-300 32 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  34. Published

    Functional Feeding Groups of Macrofauna and Detritus Decomposition along a Gradient of Glacial Meltwater Influence in Tropical High-Andean Streams

    Andino, P., Espinosa, R., Crespo-Pérez, V., Cauvy-Fraunié, S., Dangles, O. & Jacobsen, Dean, 2021, In: Water. 13, 22, 16 p., 3303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Functions of TopBP1 in preserving genome integrity during mitosis

    Bagge, J., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2021, In: Seminars in Cell and Developmental Biology. 113, p. 57-64 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  36. Published

    GEM MarineBasis – Programme description

    Sejr, M. K., Winding, M. H. S., Juul-Pedersen, T., Hansen, Per Juel & Nielsen, T. G., 2021, Greenland Ecosystem Monitoring Annual Report Cards 2020. Christensen, T. R., Arndal, M. F. & Topp-Jørgensen, E. (eds.). Aarhus University, DCE – Danish Centre for Environment and Energy, p. 40-41 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  37. Published

    GLOVOCS - Master compound assignment guide for proton transfer reaction mass spectrometry users

    Yáñez-Serrano, A. M., Filella, I., LLusià, J., Gargallo-Garriga, A., Granda, V., Bourtsoukidis, E., Williams, J., Seco, Roger, Cappellin, L., Werner, C., de Gouw, J. & Peñuelas, J., 2021, In: Atmospheric Environment. 244, 4 p., 117929.

    Research output: Contribution to journal › Letter › Research › peer-review

  38. Published

    GNPS-guided discovery of xylacremolide C and D, evaluation of their putative biosynthetic origin and bioactivity studies of xylacremolide A and B

    Schalk, F., Fricke, J., Um, S., Conlon, B. H., Maus, H., Jäger, N., Heinzel, T., Schirmeister, T., Poulsen, Michael & Beemelmanns, C., 2021, In: RSC Advances. 31, 11, p. 18748-18756 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Genome editing in archaeal viruses and endogenous viral protein purification

    Alfastsen, L., Peng, Xu & Bhoobalan, Yuvaraj, 2021, In: STAR Protocols. 2, 4, 27 p., 100791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Genome reduction and relaxed selection is associated with the transition to symbiosis in the basidiomycete genus Podaxis

    Conlon, B. H., Gostinčar, C., Fricke, J., Kreuzenbeck, N. B., Daniel, J., Schlosser, M. S. L., Peereboom, N., Aanen, D. K., de Beer, Z. W., Beemelmanns, C., Gunde-Cimerman, N. & Poulsen, Michael, 2021, In: iScience. 24, 6, 20 p., 102680.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Genome-wide analyses across Viridiplantae reveal the origin and diversification of small RNA pathway-related genes

    Wang, S., Liang, H., Xu, Y., Li, L., Wang, H., Sahu, D. N., Petersen, Morten, Melkonian, M., Sahu, S. K. & Liu, Huan, 2021, In: Communications Biology . 4, 11 p., 412.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq

    Petryk, N., Reveron-Gomez, Nazaret, González-Aguilera, C., Dalby, M., Andersson, Robin & Groth, Anja, 2021, In: Nature Protocols. 16, p. 4446-4493

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Genomic Analysis of Pasteurella atlantica Provides Insight on Its Virulence Factors and Phylogeny and Highlights the Potential of Reverse Vaccinology in Aquaculture

    Ellul, R. M., Kalatzis, Panagiotis, Frantzen, C., Haugland, G. T., Gulla, S., Colquhoun, D. J., Middelboe, Mathias, Wergeland, H. I. & Rønneseth, A., 2021, In: Microorganisms. 9, 6, 22 p., 1215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico

    Murphy, Rob, Palm, M., Mustonen, V., Warringer, J., Farewell, A., Parts, L. & Moradigaravand, D., 2021, In: mSphere. 6, 1, 15 p., e00738-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Genomic Stability and Phenotypic Characteristics of Industrially Produced Lacticaseibacillus rhamnosus GG in a Yogurt Matrix

    Strickertsson, Marianne Stage, Hui, Y., Nielsen, Dennis Sandris, Vera-Jimenéz, N. I., Olsen, J., Sandelin, Albin Gustav & Wichmann, A., 2021, In: Applied and Environmental Microbiology. 87, 24, 18 p., e01575-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

    von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Geographical sampling bias on the assessment of endemism areas for marine meiobenthic fauna

    Garraffoni, A., Sørensen, Martin Vinther, Worsaae, Katrine, Di Domenico, M., Sales, L. P., Santos, J. & Lourenço, A., 2021, In: Cladistics. 37, 5, p. 571-585 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Geomorphology and vegetation drive hydrochemistry changes in two Northeast Greenland streams

    Pastor, A., Skovsholt, L. J., Christoffersen, Kirsten Seestern, Wu, N. & Riis, T., 2021, In: Hydrological Processes. 35, 10, 14 p., e14369.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Gill Transcriptomic Responses to Toxin-producing Alga Prymnesium parvum in Rainbow Trout

    Clinton, M., Krol, E., Sepúlveda, D., Andersen, N. R., Brierley, A. S., Ferrier, D. E. K., Hansen, Per Juel, Lorenzen, N. & Martin, S. A. M., 2021, In: Frontiers in Immunology. 12, 17 p., 794593.

    Research output: Contribution to journal › Journal article › Research › peer-review

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