Department of Biology

Organisation profile

 

 
  1. 2021
  2. E-pub ahead of print

    Urbanized microbiota in infants, immune constitution and later risk of atopic diseases

    Lehtimäki, J., Thorsen, J., Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, Urvish, Vestergaard, G., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Bisgaard, Hans & Stokholm, Jakob, Dec 2021, (E-pub ahead of print) In: Journal of Allergy and Clinical Immunology. 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Indirect effects of climate change inhibit N2 fixation associated with the feathermoss Hylocomium splendens in subarctic tundra

    Alvarenga, Danillo Oliveira & Rousk, Kathrin, 1 Nov 2021, In: Science of the Total Environment. 795, p. 148676

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Deepened snow enhances gross nitrogen cycling among Pan-Arctic tundra soils during both winter and summer

    Xu, Wenyi, Priemé, Anders, Cooper, E. J., Mörsdorf, M. A., Semenchuk, P., Elberling, Bo, Grogan, P. & Ambus, Per Lennart, 1 Sep 2021, In: Soil Biology and Biochemistry. 160, 13 p., 108356.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Polyketide synthase genes and molecular trade-offs in the ichthyotoxic species Prymnesium parvum

    Anestis, K., Kohli, G. S., Wohlrab, S., Varga, E., Larsen, T. O., Hansen, Per Juel & John, U., 9 Jul 2021, In: Science of the Total Environment. 795, 10 p., 148878.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. E-pub ahead of print

    Dynamics of Baltic Sea phages driven by environmental changes

    Hoetzinger, M., Nilsson, E., Arabi, R., Osbeck, C. M. G., Pontiller, B., Hutinet, G., Bayfield, O. W., Traving, S., Kisand, V., Lundin, D., Pinhassi, J., Middelboe, Mathias & Holmfeldt, K., 7 Jul 2021, (E-pub ahead of print) In: Environmental Microbiology. 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. E-pub ahead of print

    Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

    Sanchez Barreiro, Fatima, Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, M. V., de Manuel, M., Margaryan, Ashot, Ciucani, Marta Maria, Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., Zhang, Guojie, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 7 Jul 2021, (E-pub ahead of print) In: Molecular Ecology. 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. E-pub ahead of print

    Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote

    Sacks, B. N., Mitchell, K. J., Quinn, C. B., Hennelly, L. M., Sinding, Mikkel Holger Strander, Statham, M. J., Preckler-Quisquater, S., Fain, S. R., Kistler, L., Vanderzwan, S. L., Meachen, J. A., Ostrander, E. A. & Frantz, L. A. F., 7 Jul 2021, (E-pub ahead of print) In: Molecular Ecology. 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. E-pub ahead of print

    The endangered White Sands pupfish (Cyprinodon tularosa) genome reveals low diversity and heterogenous patterns of differentiation

    Black, A. N., Willoughby, J. R., Brüniche-Olsen, Anna, Pierce, B. L. & DeWoody, J. A., 1 Jul 2021, (E-pub ahead of print) In: Molecular Ecology Resources. 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. E-pub ahead of print

    Retention of prey genetic material by the kleptoplastidic ciliate Strombidium cf. basimorphum

    Maselli, M., Anestis, K., Klemm, K., Hansen, Per Juel & John, U., 30 Jun 2021, (E-pub ahead of print) In: Frontiers in Microbiology. 12

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. E-pub ahead of print

    Transcriptional Profiles Reveal Deregulation of Lipid Metabolism and Inflammatory Pathways in Neurons Exposed to Palmitic Acid

    Flores-León, M., Alcaraz, N., Pérez-Domínguez, M., Torres-Arciga, K., Rebollar-Vega, R., De la Rosa-Velázquez, I. A., Arriaga-Canon, C., Herrera, L. A., Arias, C. & González-Barrios, R., 21 Jun 2021, (E-pub ahead of print) In: Molecular Neurobiology. 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. E-pub ahead of print

    Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts

    O'Brien, P. A., Andreakis, N., Tan, S., Miller, D. J., Webster, N. S., Zhang, Guojie & Bourne, D. G., 18 Jun 2021, (E-pub ahead of print) In: Molecular Ecology. 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. E-pub ahead of print

    Queens of the inquiline social parasite Acromyrmex insinuator can join nest-founding queens of its host, the leaf-cutting ant Acromyrmex echinatior

    Howe, J., Schiøtt, M. & Boomsma, Koos, 17 Jun 2021, (E-pub ahead of print) In: Insectes Sociaux. 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. E-pub ahead of print

    Phage satellites and their emerging applications in biotechnology

    Ibarra Chavez, Victor Rodrigo, Hansen, Mads Frederik, Pinilla-Redondo, R., Seed, K. D. & Trivedi, Urvish, 9 Jun 2021, (E-pub ahead of print) In: FEMS Microbiology Reviews. 20 p., fuab031.

    Research output: Contribution to journalReviewResearchpeer-review

  15. Published

    Phage satellites and their emerging applications in biotechnology

    Ibarra Chavez, Victor Rodrigo, Hansen, Mads Frederik, Pinilla-Redondo, R., Seed, K. D. & Trivedi, Urvish, 9 Jun 2021, In: FEMS Microbiology Reviews.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Quantitative single-cell proteomics as a tool to characterize cellular hierarchies

    Schoof, Erwin Marten, Furtwängler, Benjamin, Üresin, Nil, Rapin, N., Savickas, S., Gentil, Coline Alice Jeanne, Lechman, E., Keller, U. A. D., Dick, J. E. & Porse, Bo Torben, 7 Jun 2021, In: Nature Communications. 12, 1, p. 3341

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    The termite fungal cultivar termitomyces combines diverse enzymes and oxidative reactions for plant biomass conversion

    Schalk, F., Gostincar, C., Kreuzenbeck, N. B., Conlon, B. H., Sommerwerk, E., Rabe, P., Burkhardt, I., Krüger, T., Kniemeyer, O., Brakhage, A. A., Gunde-Cimerman, N., de Beer, Z. W., Dickschat, J. S., Poulsen, Michael & Beemelmanns, C., Jun 2021, In: mBio. 12, 3, e03551-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. E-pub ahead of print

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, Jóhanna, Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 14 May 2021, (E-pub ahead of print) In: Environmental Microbiology. 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. E-pub ahead of print

    VeTra: a tool for trajectory inference based on RNA velocity

    Weng, Guangzheng, Kim, Junil & Won, Kyoung Jae, 11 May 2021, (E-pub ahead of print) In: Bioinformatics (Oxford, England).

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. E-pub ahead of print

    Physical activity attenuates postprandial hyperglycaemia in homozygous TBC1D4 loss-of-function mutation carriers

    Schnurr, Theresia Maria, Jørsboe, Emil, Chadt, A., Dahl-Petersen, I. K., Kristensen, Jonas Møller, Wojtaszewski, Jørgen F P, Springer, C., Bjerregaard, P., Brage, S., Pedersen, Oluf Borbye, Moltke, Ida, Grarup, Niels, Al-Hasani, H., Albrechtsen, Anders, Jørgensen, M. E. & Hansen, Torben, 29 Apr 2021, (E-pub ahead of print) In: Diabetologia.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    VM i molekylære puslespil

    Abildgaard, Amanda Bering, Winther, Jakob R., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 16 Apr 2021, In: Weekendavisen: Ideer. 15, p. 11

    Research output: Contribution to journalContribution to newspaper - Feature articleCommunication

  22. E-pub ahead of print

    Physiological Responses of Mesodinium major to Irradiance, Prey Concentration and Prey Starvation

    Drumm, K., Norlin, A., Kim, M., Altenburger, A. & Hansen, Per Juel, 15 Apr 2021, (E-pub ahead of print) In: Journal of Eukaryotic Microbiology. e12854.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Establishment of heterochromatin in domain-size-dependent bursts

    Nickels, Jan Fabio, Edwards, A. K., Charlton, Sebastian Jespersen, Mortensen, A. M., Hougaard, S. C. L., Trusina, Ala, Sneppen, Kim & Thon, Genevieve, 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. E-pub ahead of print

    Tumor Clearance and Immune Cell Recruitment in UV-Induced Murine Squamous Cell Carcinoma Exposed to Ablative Fractional Laser and Imiquimod Treatment

    Janeiro Fontenete, Silvia Marisa, Lerche, Catharina Margrethe, Paasch, U., Perez-Moreno, Mirna, Olesen, U. H. & Hædersdal, Merete, 3 Apr 2021, (E-pub ahead of print) In: Lasers in Surgery and Medicine. 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. E-pub ahead of print

    The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial

    Thorsen, J., Stokholm, Jakob, Rasmussen, Morten Arendt, Mortensen, M. S., Brejnrod, A. D., Hjelmsø, M., Shah, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes & Bisgaard, Hans, 17 Mar 2021, (E-pub ahead of print) In: American Journal of Respiratory and Critical Care Medicine.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Betydningen af byggeriet af ”Fælledby” for biodiversiteten på Amager Fælled [fagligt notat]

    Ejrnæs, R. & Bruun, Hans Henrik, 16 Mar 2021, Kalø. 7 p.

    Research output: Book/ReportReportCommissionedpeer-review

  27. E-pub ahead of print

    Geographical sampling bias on the assessment of endemism areas for marine meiobenthic fauna

    Garraffoni, A., Sørensen, Martin Vinther, Worsaae, Katrine, Di Domenico, M., Sales, L. P., Santos, J. & Lourenço, A., 5 Mar 2021, (E-pub ahead of print) In: Cladistics. 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Comparative Genomics Reveals Prophylactic and Catabolic Capabilities of Actinobacteria within the Fungus-Farming Termite Symbiosis

    Murphy, Robert, Benndorf, R., de Beer, Z. W., Vollmers, J., Kaster, A., Beemelmanns, C. & Poulsen, Michael, Mar 2021, In: mSphere. 6, 2, 12 p., e01233-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Selection criteria for early breast cancer patients in the DBCG proton trial - The randomised phase III trial strategy

    Stick, L. B., Lorenzen, E. L., Yates, E. S., Anandadas, C., Andersen, K., Aristei, C., Byrne, O., Hol, S., Jensen, I., Kirby, A. M., Kirova, Y. M., Marrazzo, L., Matias-Perez, A., Nielsen, M. M. B., Nissen, H. D., Oliveros, S., Verhoeven, K., Vikstrom, J. & Offersen, B. V., Mar 2021, In: Clinical and Translational Radiation Oncology. 27, p. 126-131 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    When to wake up? The optimal waking-up strategies for starvation-induced persistence

    Himeoka, Yusuke & Mitarai, Namiko, 11 Feb 2021, In: PLoS Computational Biology. 17, 2, 21 p., 1008655.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Accepted/In press

    Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda

    Guang, X., Lan, Tianming, Wan, Q. H., Huang, Y., Li, H., Zhang, M., Li, R., Zhang, Z., Lei, Y., Zhang, L., Zhang, H., Li, D., Li, Xiaoping, Li, H., Xu, Y., Qiao, M., Wu, D., Tang, K., Zhao, P., Lin, J., Sahu, S. K., Liang, Q., Jiang, W., Zhang, D., Xu, X., Liu, X., Lisby, Michael, Yang, H., Kristiansen, Karsten, Liu, Huan & Fang, S., 4 Feb 2021, (Accepted/In press) In: Science Bulletin. 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Molekylære stavefejl

    Abildgaard, Amanda Bering, Winther, Jakob R., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 28 Jan 2021, In: Weekendavisen, Ideer.

    Research output: Contribution to journalContribution to newspaper - Feature articleCommunication

  33. E-pub ahead of print

    Large-scale inference of population structure in presence of missingness using PCA

    Meisner, Jonas, Liu, S., Huang, M. & Albrechtsen, Anders, 18 Jan 2021, (E-pub ahead of print) In: Bioinformatics. 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published
  35. E-pub ahead of print

    Improved metagenome binning and assembly using deep variational autoencoders

    Nissen, J. N., Johansen, Joachim, Allesøe, Rosa Lundbye, Sonderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Jensen, Lars Juhl, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, Jan 2021, (E-pub ahead of print) In: Nature Biotechnology. 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    (p)ppGpp-Dependent Regulation of the Nucleotide Hydrolase PpnN Confers Complement Resistance in Salmonella enterica Serovar Typhimurium

    Chau, N. Y. E., Pérez-Morales, D., Elhenawy, W., Bustamante, V. H., Zhang, Yong & Coombes, B. K., 2021, In: Infection and Immunity. 89, 2, 14 p., e00639-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    20 years of Zootaxa: Tardigrada (Ecdysozoa: Panarthropoda)

    McInnes, S. J., Jørgensen, A. & Michalczyk, Ł., 2021, In: Zootaxa. 4979, 1, p. 23-24 2 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  38. Accepted/In press

    3D Adipose Tissue Culture Links the Organotypic Microenvironment to Improved Adipogenesis

    Shen, J. X., Couchet, M., Dufau, J., de Castro Barbosa, T., Ulbrich, M. H., Helmstädter, M., Kemas, A. M., Zandi Shafagh, R., Marques, M., Hansen, Jacob B., Mejhert, N., Langin, D., Rydén, M. & Lauschke, V. M., 2021, (Accepted/In press) In: Advanced Science. 17 p., 2100106.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Amazonocrinis nigriterrae gen. nov., sp. nov., Atlanticothrix silvestris gen. nov., sp. nov. and Dendronalium phyllosphericum gen. nov., sp. nov., nostocacean cyanobacteria from Brazilian environments

    Alvarenga, Danillo Oliveira, Andreote, A. P. D., Branco, L. H. Z., Delbaje, E., Cruz, R. B., Varani, A. D. M. & Fiore, M. F., 2021, In: International Journal of Systematic and Evolutionary Microbiology. 71, 5, 12 p., 004811.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov

    ZOU, Yuanqiang, Xue, W., Lin, X., Lv, M., Luo, G., Dai, Y., Sun, H., Liu, S., Sun, C., Hu, T. & Xiao, L., 2021, In: Systematic and Applied Microbiology. 44, 3, 8 p., 126201.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Crystallicutis gen. nov. (Irpicaceae, Basidiomycota), including C. damiettensis sp. nov., found on Phoenix dactylifera (date palm) trunks in the Nile Delta of Egypt

    El-Gharabawy, H. M., Leal-Dutra, Caio Ambrosio & Griffith, G. W., 2021, In: Fungal Biology. 125, 6, p. 447-458 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    De novo whole-genome assembly and resequencing resources for the roan (Hippotragus equinus), an iconic African antelope

    Gonçalves, M., Siegismund, Hans Redlef, Van Vuuren, B. J., Koepfli, K., Ferrand, N. & Godinho, R., 2021, In: G3: Genes, Genomes, Genetics. 11, 2, 9 p., jkab002.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Accepted/In press

    Giraffa camelopardalis

    Liu, C., Gao, J., Huang, J., Wang, W., Heller, Rasmus & Qiu, Q., 2021, (Accepted/In press) In: Trends in Genetics. 2 p.

    Research output: Contribution to journalLetterResearchpeer-review

  44. Published

    Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms

    Gastineau, R., Hansen, Gert, Poulin, M., Lemieux, C., Turmel, M., Bardeau, J., Leignel, V., Hardivillier, Y., Morançais, M., Fleurence, J., Gaudin, P., Méléder, V., Cox, E. J., Davidovich, N. A., Davidovich, O. I., Witkowski, A., Kaczmarska, I., Ehrman, J. M., Onís, E. S., Quintana, A. M., Mucko, M., Mordret, S., Sarno, D., Jacquette, B., Falaise, C., Séveno, J., Lindquist, N. L., Kemp, P. S., Eker-Develi, E., Konucu, M. & Mouget, J., 2021, In: Biology. 10, 4, 27 p., 328.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Mammuthus sp. (Early and Middle Pleistocene Mammoths)

    Pecnerová, P., Díez-del-Molino, D., van der Valk, T., Dehasque, M., Götherström, A. & Dalén, L., 2021, In: Trends in Genetics. 37, 7, p. 682-683 2 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  46. Published

    Saccharomyces cerevisiae as a superior host for overproduction of prokaryotic integral membrane proteins

    Preisler, Sarah Spruce, Wiuf, Anders Drabæk, Friis, M., Kjaergaard, L., Hurd, M., Becares, E. R., Nurup, C. N., Bjoerkskov, F. B., Szathmáry, Z., Gourdon, Pontus Emanuel, Callø, Kirstine, Klærke, Dan Arne, Gotfryd, Kamil & Pedersen, Per Amstrup, 2021, In: Current research in structural biology. 3, p. 51-71 21 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Submitted

    A Novel and Direct Metamobilome Approach improves the Detection of Larger-sized Circular Elements across Kingdoms

    Alanin, K. S., Jørgensen, T. S., Browne, P., Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, (Submitted) In: bioRxiv. 761098.

    Research output: Contribution to journalJournal articleResearch

  48. Published

    A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics

    Chen, F., Su, L., Hu, S., Xue, J., Liu, H., Liu, G., Jiang, Y., Du, J., Qiao, Y., Fan, Y., Liu, Huan, Yang, Q., Lu, W., Shao, Z., Zhang, J., Zhang, L., Chen, F. & Cheng, Z. (., 2021, In: Horticulture Research. 8, 13 p., 141.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    A community resource for paired genomic and metabolomic data mining

    Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A., Bugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Matus, D. G. G., Helfrich, E. J. N., Hempel, B., Hur, J., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y., Li, Xuan Ji, Little, J. C., Maloney, K. N., Männle, D., Martin H., C., McAvoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L., O'Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, Søren Johannes, Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., 2021, In: Nature Chemical Biology. 17, 4, p. 363-368

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases

    Liu, X., Tang, S., Zhong, H., Tong, X., Jie, Zhuye, Ding, Q., Wang, D., Guo, R., Xiao, L., Xu, X., Yang, H., Wang, J., Zong, Y., Liu, W., Liu, X., Zhang, Yong, Brix, S., Kristiansen, Karsten, Hou, Y., Jia, H. & Zhang, Tao, 2021, In: Cell Discovery. 7, 15 p., 9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    A global perspective on the application of riverine macroinvertebrates as biological indicators in Africa, South-Central America, Mexico and Southern Asia

    Eriksen, T. E., Brittain, J. E., Søli, G., Jacobsen, Dean, Goethals, P. & Friberg, N., 2021, In: Ecological Indicators. 126, 17 p., 107609.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    A large-scale genome-wide gene expression analysis in peripheral blood identifies very few differentially expressed genes related to antidepressant treatment and response in patients with major depressive disorder

    Nøhr, Anne Krogh, Lindow, M., Forsingdal, A., Demharter, S., Nielsen, T., Buller, R., Moltke, Ida, Vitezic, M. & Albrechtsen, Anders, 2021, In: Neuropsychopharmacology. 46, 7, p. 1324-1332 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals

    Li, J., Zhang, J., Liu, J., Zhou, Y., Cai, C., Xu, L., Dai, X., Feng, S., Guo, C., Rao, J., Wei, K., Jarvis, E. D., Jiang, Y., Zhou, Z., Zhang, Guojie & Zhou, Q., 2021, In: GigaScience. 10, 1, 15 p., giaa142.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

    Liu, J., Wang, Z., Li, J., Xu, L., Liu, J., Feng, S., Guo, C., Chen, S., Ren, Z., Rao, J., Wei, K., Chen, Y., Jarvis, E. D., Zhang, Guojie & Zhou, Q., 2021, In: Genome Research. 31, 3, p. 497-511 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    A porcine brain-wide RNA editing landscape

    Huang, Jinrong, Lin, L., Dong, Z., Yang, L., Zheng, T., Gu, W., Zhang, Y., Yin, T., Sjöstedt, E., Mulder, J., Uhlén, M., Kristiansen, Karsten, Bolund, L. & Luo, Y., 2021, In: Communications Biology . 4, 12 p., 717.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    A reference-free approach to analyse RADseq data using standard next generation sequencing toolkits

    Heller, Rasmus, Nursyifa, Casia, Erill, Genis Garcia, Salmona, J., Chikhi, L., Meisner, Jonas, Korneliussen, Thorfinn Sand & Albrechtsen, Anders, 2021, In: Molecular Ecology Resources. 21, 4, p. 1085-1097 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    A tipping point in carbon storage when forest expands into tundra is related to mycorrhizal recycling of nitrogen

    Clemmensen, K. E., Durling, M. B., Michelsen, Anders, Hallin, S., Finlay, R. D. & Lindahl, B. D., 2021, In: Ecology Letters. 24, 6, p. 1193-1204 12 p.

    Research output: Contribution to journalLetterResearchpeer-review

  58. Published

    A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe

    Liu, C., Gao, J., Cui, X., Li, Z., Chen, L., Yuan, Y., Zhang, Y., Mei, L., Zhao, L., Cai, D., Hu, M., Zhou, B., Li, Z., Qin, T., Si, H., Li, G., Lin, Z., Xu, Y., Zhu, C., Yin, Y., Zhang, C., Xu, W., Li, Q., Wang, K., Gilbert, M Thomas P, Heller, Rasmus, Wang, W., Huang, J. & Qiu, Q., 2021, In: Science Advances. 7, 12, 13 p., eabe9459.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    A unique Malpighian tubule architecture in Tribolium castaneum informs the evolutionary origins of systemic osmoregulation in beetles

    Koyama, T., Naseem, M. T., Kolosov, D., Vo, C. T., Mahon, D., Jakobsen, A. S. S., Jensen, R. L., Denholm, B., O'Donnell, M. & Halberg, Kenneth Veland, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 14, 12 p., e2023314118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    ALMS1 Regulates TGF-β Signaling and Morphology of Primary Cilia

    Álvarez-Satta, M., Lago-Docampo, M., Bea-Mascato, B., Solarat, C., Castro-Sánchez, S., Christensen, Søren Tvorup & Valverde, D., 2021, In: Frontiers in Cell and Developmental Biology. 9, 8 p., 623829.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Ab initio determination of the shape of membrane proteins in a nanodisc

    Orioli, Simone, Hansen, C. G. H. & Arleth, Lise, 2021, In: Acta crystallographica Section D: Structural biology . 77, p. 176-193 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. E-pub ahead of print

    Adult moulting and dimorphism in a new species of Sphenoderes (Kinorhyncha Kentrorhagata): Is the exception becoming the rule?

    Sørensen, Martin Vinther & Herranz, Maria, 2021, (E-pub ahead of print) In: Acta Zoologica. 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    African lungfish genome sheds light on the vertebrate water-to-land transition

    Wang, K., Wang, J., Zhu, C., Yang, L., Ren, Y., Ruan, J., Fan, G., Hu, J., Xu, W., Bi, X., Zhu, Y., Song, Y., Chen, H., Ma, T., Zhao, R., Jiang, H., Zhang, B., Feng, C., Yuan, Y., Gan, X., Li, Y., Zeng, H., Liu, Q., Zhang, Y., Shao, F., Hao, S., Zhang, H., Xu, X., Liu, X., Wang, D., Zhu, M., Zhang, Guojie, Zhao, W., Qiu, Q., He, S. & Wang, W., 2021, In: Cell. 184, 5, p. 1362-1376.e18 33 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Agricultural land use curbs exotic invasion but sustains native plant diversity at intermediate levels

    Pellegrini, Elisa, Buccheri, M., Martini, F. & Boscutti, F., 2021, In: Scientific Reports. 11, 10 p., 8385.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    An Expanded Gene Catalog of Mouse Gut Metagenomes

    Zhu, J., Ren, Huahui, Zhong, H., Li, Xiaoping, ZOU, Yuanqiang, Han, Mo, Li, M., Madsen, L., Kristiansen, Karsten & Xiao, L., 2021, In: mSphere. 6, 1, 12 p., e-01119-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    An automatic classification algorithm for submerged aquatic vegetation in shallow lakes using Landsat imagery

    Dai, Y., Feng, L., Hou, X. & Tang, Jing, 2021, In: Remote Sensing of Environment. 260, 15 p., 112459.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data

    Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, Tianming & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    An exploratory investigation of glucocorticoids, personality and survival rates in wild and rehabilitated hedgehogs (Erinaceus europaeus) in Denmark

    Rasmussen, S. L., Kalliokoski, Otto, Dabelsteen, Torben & Abelson, Klas, 2021, In: BMC Ecology and Evolution. 21, 16 p., 96.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

    Alanin, Katrine Wacenius Skov, Jørgensen, T. S., Browne, P. D., Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

    Xie, F., Jin, W., Si, H., Yuan, Y., Tao, Y., Liu, J., Wang, X., Yang, C., Li, Q., Yan, X., Lin, L., Jiang, Q., Zhang, L., Guo, C., Greening, C., Heller, Rasmus, Guan, L. L., Pope, P. B., Tan, Z., Zhu, W., Wang, M., Qiu, Q., Li, Z. & Mao, S., 2021, In: Microbiome. 9, 20 p., 137.

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    An under‑ice bloom of mixotrophic haptophytes in low nutrient and freshwater‑influenced Arctic waters

    Søgaard, D. H., Sorrell, B. K., Sejr, M. K., Andersen, P., Rysgaard, S., Hansen, Per Juel, Skyttä, A., Lemcke, S. & Lund-Hansen, L. C., 2021, In: Scientific Reports. 11, 8 p., 11:2915.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Ancestral developmental potentials in early bony fish contributed to vertebrate water-to-land transition

    Bi, X. & Zhang, Guojie, 2021, In: Zoological research. 42, 2, p. 135-137 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Ancient DNA from bulk bone reveals past genetic diversity of vertebrate fauna on Kangaroo Island, Australia

    Seersholm, Frederik Valeur, Grealy, A., McDowell, M. C., Cole, Theresa Louise, Arnold, L. J., Prideaux, G. J. & Bunce, M., 2021, In: Quaternary Science Reviews. 262, 9 p., 106962.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil

    Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. E-pub ahead of print

    Aquatic plants are influenced by the surrounding landscape

    Pedersen, Ole, 2021, (E-pub ahead of print) In: TheScienceBreaker. 2 p.

    Research output: Contribution to journalLetterResearch

  76. Published

    Artificial neural network (ANN) modelling for the estimation of soil microbial biomass in vineyard soils

    Pellegrini, Elisa, Rovere, N., Zaninotti, S., Franco, I., De Nobili, M. & Contin, M., 2021, In: Biology and Fertility of Soils. 57, 1, p. 145-151 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    August Krogh's contribution to the rise of physiology during the first half the 20th century

    Larsen, Erik Hviid, Hoffmann, Else Kay, Hedrick, M. S. & Wang, T., 2021, In: Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology. 256, 7 p., 110931.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Binding Revisited - Avidity in Cellular Function and Signaling

    Erlendsson, S. & Teilum, Kaare, 2021, In: Frontiers in Molecular Biosciences. 7, 13 p., 615565.

    Research output: Contribution to journalReviewResearchpeer-review

  79. Published

    Binding Sites for Oligosaccharide Repeats from Lactic Acid Bacteria Exopolysaccharides on Bovine β-Lactoglobulin Identified by NMR Spectroscopy

    Birch, J., Khan, S., Madsen, M., Kjeldsen, C., Møller, M. S., Stender, E. G. P., Peters, G. H. J., Duus, J. Ø., Kragelund, Birthe Brandt & Svensson, B., 2021, In: ACS Omega. 6, 13, p. 9039-9052 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Bioactive Ascochlorin Analogues from the Marine-Derived Fungus Stilbella fimetaria

    Subko, K., Kildgaard, S., Vicente, F., Reyes, F., Genilloud, O. & Larsen, T. O., 2021, In: Marine Drugs. 19, 2, 12 p., 46.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. E-pub ahead of print

    Biodiversity patterns of Arctic diatom assemblages in lakes and streams: Current reference conditions and historical context for biomonitoring

    Kahlert, M., Rühland, K. M., Lavoie, I., Keck, F., Saulnier-Talbot, E., Bogan, D., Brua, R. B., Campeau, S., Christoffersen, Kirsten Seestern, Culp, J. M., Karjalainen, S. M., Lento, J., Schneider, S. C., Shaftel, R. & Smol, J. P., 2021, (E-pub ahead of print) In: Freshwater Biology. 25 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    Bsgatlas: A unified bacillus subtilis genome and transcriptome annotation atlas with enhanced information access

    Geissler, A. S., Anthon, Christian, Alkan, F., González-Tortuero, E., Poulsen, L. D., Kallehauge, T. B., Breüner, A., Seemann, Ernst Stefan, Vinther, Jeppe & Gorodkin, Jan, 2021, In: Microbial Genomics. 7, 2, 17 p., 000524.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Buffering effects of soil seed banks on plant community composition in response to land use and climate

    Plue, J., Van Calster, H., Auestad, I., Basto, S., Bekker, R. M., Bruun, Hans Henrik, Chevalier, R., Decocq, G., Grandin, U., Hermy, M., Jacquemyn, H., Jakobsson, A., Jankowska-Błaszczuk, M., Kalamees, R., Koch, M. A., Marrs, R. H., Marteinsdóttir, B., Milberg, P., Måren, I. E., Pakeman, R. J., Phoenix, G. K., Thompson, K., Vandvik, V., Wagner, M. & Auffret, A. G., 2021, In: Global Ecology and Biogeography. 30, 1, p. 128-139 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Submitted

    CEP78 functions downstream of CEP350 to control biogenesis of primary cilia by negatively regulating CP110 levels

    Gonçalves, A. B., Joensen, B. B., Hasselbalch, S. K., Martens, P., Ohlsen, S. K., Quinodoz, M., Nikopoulos, K., Jeppesen, M. P. D., Weiss, C., Christensen, Søren Tvorup, Patzke, S., Rivolta, C., Andersen, J. S., Farinelli, P. & Pedersen, Lotte Bang, 2021, (Submitted) In: bioRxiv.

    Research output: Contribution to journalJournal articleResearch

  85. Published

    COVID-19 drug practices risk antimicrobial resistance evolution

    MetaSUB Consortium, M. C., 2021, In: The Lancet Microbe. 2, 4, p. e135-e136

    Research output: Contribution to journalComment/debateResearchpeer-review

  86. Published

    Calmodulin downregulation in conditional knockout HeLa cells inhibits cell migration

    Alcalde, J., Munk, M., González-Muñoz, M., Panina, S., Berchtold, Martin Werner & Villalobo, A., 2021, In: Archives of Biochemistry and Biophysics. 697, 9 p., 108680.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Century-long records reveal shifting challenges to seagrass recovery

    Krause-Jensen, D., Duarte, C. M., Sand-Jensen, Kaj & Carstensen, J., 2021, In: Global Change Biology. 27, 3, p. 563-575 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces

    ZOU, Yuanqiang, Lin, X., Xue, W., Tuo, L., Chen, M., Chen, X., Sun, C., Li, F., Liu, S., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Scientific Reports. 11, 13 p., 11340.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Characterization of an archaeal virus replication initiator protein and first insights into virus assembly of spindle-shaped virus SMV1

    Zhang, Weijia, 2021, Department of Biology, Faculty of Science, University of Copenhagen. 140 p.

    Research output: Book/ReportPh.D. thesisResearch

  90. Published

    Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients

    Zhong, H., Wang, Y., Shi, Z., Zhang, L., Ren, Huahui, He, W., Zhang, Z., Zhu, A., Zhao, J., Xiao, F., Yang, F., Liang, T., Ye, F., Zhong, B., Ruan, S., Gan, M., Zhu, J., Li, F., Li, F., Wang, D., Li, J., Ren, P., Zhu, S., Yang, H., Wang, J., Kristiansen, Karsten, Tun, H. M., Chen, W., Zhong, N., Xu, X., Li, Y., Li, J. & Zhao, J., 2021, In: Cell Discovery. 7, 14 p., 23.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    Characterization of the human skin resistome and identification of two microbiota cutotypes

    Li, Z., Xia, J., Jiang, L., Tan, Y., An, Y., Zhu, X., Ruan, J., Chen, Z., Zhen, H., Ma, Y., Jie, Z., Xiao, L., Yang, H., Wang, J., Kristiansen, Karsten, Xu, X., Jin, L., Nie, C., Krutmann, J., Liu, X. & Wang, J., 2021, In: Microbiome. 9, 18 p., 47.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Characterizing Conformational Changes of ASIC1a During Gating and Peptide Modulation

    Heusser, S. A., Sheikh, Z. P., Borg, C. B., Galleano, Iacopo & Pless, Stephan, 2021, p. 337A-337A.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  93. Published

    Charge Interactions in a Highly Charge-Depleted Protein

    Hervø-Hansen, S., Højgaard, C., Johansson, Kristoffer Enøe, Wang, Yong, Wahni, K., Young, D., Messens, J., Teilum, Kaare, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: Journal of the American Chemical Society. 143, 6, p. 2500-2508 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Chlorophyll-a concentrations in 82 large alpine lakes on the Tibetan Plateau during 2003–2017: temporal–spatial variations and influencing factors

    Pi, X., Feng, L., Li, W., Liu, J., Kuang, X., Shi, K., Qi, W., Chen, D. & Tang, Jing, 2021, In: International Journal of Digital Earth. 14, 6, p. 714-735 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. E-pub ahead of print

    Circumpolar patterns of Arctic freshwater fish biodiversity: a baseline for monitoring

    Laske, S. M., Amundsen, P., Christoffersen, Kirsten Seestern, Erkinaro, J., Gudbergsson, G., Hayden, B., Heino, J., Holmgren, K., Kahilainen, K. K., Lento, J., Orell, P., Ostergren, J., Power, M., Rafikov, R., Romakkaniemi, A., Svenning, M., Swanson, H., Whitman, M. & Zimmerman, C. E., 2021, (E-pub ahead of print) In: Freshwater Biology. 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments

    Mazhar, S. H., Li, Xuan Ji, Rashid, A., Su, J., Xu, J., Brejnrod, A. D., Su, J., Wu, Y., Zhu, Y., Zhou, S. G., Feng, R. & Rensing, C., 2021, In: Science of the Total Environment. 755, Part 2, 10 p., 142702.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Combining Bayesian age models and genetics to investigate population dynamics and extinction of the last mammoths in northern Siberia

    Dehasque, M., Pečnerová, P., Muller, H., Tikhonov, A., Nikolskiy, P., Tsigankova, V. I., Danilov, G. K., Díez-del-Molino, D., Vartanyan, S., Dalén, L. & Lister, A. M., 2021, In: Quaternary Science Reviews. 259, 10 p., 106913.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Commercially available kelp and seaweed products – valuable iodine source or risk of excess intake?

    Aakre, I., Solli, D. D., Markhus, M. W., Mæhre, H. K., Dahl, L., Henjum, S., Alexander, J., Korneliussen, P., Madsen, L. & Kjellevold, M., 2021, In: Food & Nutrition Research. 65, 17 p., 7584.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Community-wide changes reflecting bacterial interspecific interactions in multispecies biofilms

    Sadiq, F. A., Burmølle, Mette, Heyndrickx, M., Flint, S., Lu, W., Chen, W., Zhao, J. & Zhang, H., 2021, In: Critical Reviews in Microbiology. 47, 3, p. 338-358 21 p.

    Research output: Contribution to journalReviewResearchpeer-review

  100. Published

    Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production

    Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published

    Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures

    Gupta, S., Shariff, M., Chaturvedi, G., Sharma, A., Goel, N., Yadav, M., Mortensen, M. S., Sørensen, Søren Johannes, Mukerji, M. & Chauhan, N. S., 2021, In: Scientific Reports. 11, 11 p., 3963.

    Research output: Contribution to journalJournal articleResearchpeer-review

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