Department of Biology

 

 
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  1. 2024
  2. Published

    A region of suppressed recombination misleads neoavian phylogenomics

    Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Complexity of avian evolution revealed by family-level genomes

    Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, Zhou, C., Xie, Y., Huang, Z., Cao, Z., Yan, Z., Ogilvie, H. A., Nakhleh, L., Lindow, Bent Erik Kramer, Morel, B., Fjeldså, Jon, Hosner, Peter Andrew, da Fonseca, R. R., Petersen, Bent, Tobias, J. A., Székely, T., Kennedy, J. D., Reeve, A. H., Liker, A., Stervander, M., Antunes, A., Tietze, D. T., Bertelsen, Mads, Lei, F., Rahbek, Carsten, Graves, G. R., Schierup, M. H., Warnow, T., Braun, E. L., Gilbert, M Thomas P, Jarvis, E. D., Mirarab, S. & KU, thw266, 1 Apr 2024, In: Nature.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    ClockstaRX: Testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 1 Mar 2024, In: Genome Biology and Evolution. p. evae064

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Næste niveau for dansk life science er verdenstoppen – vi har fagligheden til at være der: Danske forskere, talenter og virksomheder har både bredden og niveauet til at gøre København til det næste Kendall Square. Biologisk Institut står på spring i startklodserne.

    Kroer, Niels, 12 Jan 2024, In: MedWatch.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  6. Published

    Drosophila cytokine GBP2 exerts immune responses and regulates GBP1 expression through GPCR receptor Mthl10

    Ono, M., Matsumura, T., Sung, E. J., Koyama, Takashi, Ochiai, M., Shears, S. B. & Hayakawa, Y., 2024, In: Insect Biochemistry and Molecular Biology. 167, 7 p., 104086.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    In situ incubation of iron(II)-bearing minerals and Fe(0) reveals insights into metabolic flexibility of chemolithotrophic bacteria in a nitrate polluted karst aquifer

    Visser, A. N., Martin, Joseph Donald, Osenbrück, K., Rügner, H., Grathwohl, P. & Kappler, A., 2024, In: Science of the Total Environment. 926, 16 p., 172062.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    A druggable conformational switch in the c-MYC transactivation domain

    Lama, D., Vosselman, T., Sahin, Cagla, Liaño-pons, J., Cerrato, C. P., Nilsson, L., Teilum, Kaare, Lane, D. P., Landreh, M. & Arsenian Henriksson, M., 2024, In: Nature Communications. 15, 1, 14 p., 1865.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A mutational atlas for Parkin proteostasis

    Clausen, L., Voutsinos, Vasileios, Cagiada, Matteo, Johansson, Kristoffer Enøe, Grønbæk-Thygesen, Martin, Nariya, S., Powell, R. L., Have, M. K. N., Østergaard, Vibe Hallundbæk, Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 17 p., 1541.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A new temperature-photoperiod coupled phenology module in LPJ-GUESS model v4.1: Optimizing estimation of terrestrial carbon and water processes

    Chen, S., Fu, Y. H., Li, M., Jia, Z., Cui, Y. & Tang, Jing, 2024, In: Geoscientific Model Development. 17, 7, p. 2509-2523 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A pragmatic approach for integrating molecular tools into biodiversity conservation

    Bertola, L. D., Brüniche-Olsen, A., Kershaw, F., Russo, I. R. M., MacDonald, A. J., Sunnucks, P., Bruford, M. W., Cadena, C. D., Ewart, K. M., de Bruyn, M., Eldridge, M. D. B., Frankham, R., Guayasamin, J. M., Grueber, C. E., Hoareau, T. B., Hoban, S., Hohenlohe, P. A., Hunter, M. E., Kotze, A., Kuja, J. & 21 others, Lacy, R. C., Laikre, L., Lo, N., Meek, M. H., Mergeay, J., Mittan-Moreau, C., Neaves, L. E., O'Brien, D., Ochieng, J. W., Ogden, R., Orozco-terWengel, P., Páez-Vacas, M., Pierson, J., Ralls, K., Shaw, R. E., Sogbohossou, E. A., Stow, A., Steeves, T., Vernesi, C., Watsa, M. & Segelbacher, G., 2024, In: Conservation Science and Practice. 6, 1, 15 p., e13053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    AI Implementation and Capability Development in Manufacturing: An Action Research Case

    Eklöf, Jon, Snis, U. L., Hamelryck, Thomas Wim, Grima, A. & Rønning, Ola, 2024, Proceedings of the 57th Hawaii International Conference on System Sciences - HICSS 2024. Hawaii International Conference on System Sciences, 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  14. Published

    Acclimation of subarctic vegetation to warming and increased cloudiness

    Ndah, F. A., Maljanen, M., Kasurinen, A., Rinnan, Riikka, Michelsen, Anders, Kotilainen, T. & Kivimäenpää, M., 2024, In: Plant-Environment Interactions. 5, 1, 16 p., e10130.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Accounting for Winter Warming Events in the Ecosystem Model LPJ-GUESS: Evaluation and Outlook

    Pascual, D., Johansson, M., Pongracz, A. & Tang, Jing, 2024, In: Journal of Geophysical Research: Biogeosciences. 129, 3, 13 p., e2023JG007464.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Acid–base transporters in the context of tumor heterogeneity

    Pedersen, Stine Helene Falsig, 2024, In: Pflugers Archiv European Journal of Physiology. 476, p. 689–701 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  17. Published

    African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

    Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, Lin, Long, Wang, X., Heaton, M. P., Smith, T. P. L., Hanghøj, Kristian Ebbesen, Sinding, Mikkel Holger Strander, Atickem, A., Chikhi, L., Roos, C., Gaubert, P., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 15 p., 172.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    An Exploration of Artificial Intelligence-Driven De Novo Peptide Sequencing: Towards Future Proteomics and Medicine

    Chang, Yuqi, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/Report › Ph.D. thesis › Research

  19. Published

    Analysis of Genomic and Transcriptomic Signatures Associated with Amyotrophic Lateral Sclerosis

    Guan, Liping, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Analysis of heterochromatin dynamics in Schizosaccharomyces pombe: With a special focus on the role of the replication factor Mrc1/Claspin in maintenance of epigenetic silencing

    Charlton, Sebastian Jespersen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Ancient and Modern Genomes Reveal Microsatellites Maintain a Dynamic Equilibrium Through Deep Time

    McComish, B. J., Charleston, M. A., Parks, M., Baroni, C., Salvatore, M. C., Li, R., KU, thw266, Millar, C. D., Holland, B. R. & Lambert, D. M., 2024, In: Genome Biology and Evolution. 16, 3, 11 p., evae017.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Aspects of Neurovascular Signaling Mechanisms in Migraine

    Rasmussen, Rikke Holm, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 129 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  25. E-pub ahead of print

    BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum

    Leader, D. P., Naseem, Muhammad Tayyib & Halberg, Kenneth Veland, 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 168520.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis

    Gíslason, M. H., Demircan, G. S., Prachar, Marek, Furtwängler, Benjamin, Schwaller, J., Schoof, E., Porse, Bo Torben, Rapin, N. & Bagger, F., 2024, In: Nucleic acids symposium series. 52, D1, p. D1138–D1142 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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