Department of Biology

Organisation profile

 

 
  1. Published

    Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation

    Guo, G., Sun, X., Chen, C., Wu, S., Huang, P., Li, Z., Dean, M., Huang, Y., Jia, W., Zhou, Q., Tang, A., Yang, Z., Li, X., Song, P., Zhao, X., Ye, R., Zhang, S., Lin, Z., Qi, M., Wan, S., Xie, L., Fan, F., Nickerson, M. L., Zou, X., Hu, X., Xing, L., Lv, Z., Mei, H., Gao, S., Liang, C., Gao, Z., Lu, J., Yu, Y., Liu, C., Li, L., Fang, X., Jiang, Z., Yang, J., Li, C., Zhao, X., Chen, J., Zhang, F., Lai, Y., Lin, Z., Zhou, F., Chen, H., Chan, H. C., Tsang, S., Theodorescu, D., Li, Y., Zhang, X., Wang, J., Yang, H., Gui, Y., Wang, J. & Cai, Z., 2013, In: Nature Genetics. 45, 12, p. 1459-1463 5 p.

    Research output: Contribution to journalLetterResearchpeer-review

  2. Published

    Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation

    Lou, S., Lee, H., Qin, H., Li, J., Gao, Z., Liu, X., Chan, L. L., Lam, V. K. L., So, W., Wang, Y., Lok, S., Wang, J., Ma, R. C. W., Tsui, S. K., Chan, J. C. N., Chan, T. & Yip, K. Y., 2014, In: Genome Biology (Online Edition). 15, 7, 21 p., 408.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora

    Habibi, R., Tarighi, S., Behravan, J., Taheri, P., Kjøller, A. H., Brejnrod, A. D., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2017, In: Genome Announcements. 5, 13, 2 p., e00026-17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Whole-genome sequence of Schistosoma haematobium

    Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, Guojie, Fang, X., Kang, Y., Campbell, B. E., Loukas, A., Ranganathan, S., Rollinson, D., Rinaldi, G., Brindley, P. J., Yang, H., Wang, J., Wang, J. & Gasser, R. B., Feb 2012, In: Nature Genetics. 44, 2, p. 221-225 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

    Chen, S., Zhang, G., Shao, C., Huang, Q., Liu, G., Zhang, P., Song, W., An, N., Chalopin, D., Volff, J., Hong, Y., Li, Q., Sha, Z., Zhou, H., Xie, M., Yu, Q., Liu, Y., Xiang, H., Wang, N., Wu, K., Yang, C., Zhou, Q., Liao, X., Yang, L., Hu, Q., Zhang, J., Meng, L., Jin, L., Tian, Y., Lian, J., Yang, J., Miao, G., Liu, S., Liang, Z., Yan, F., Li, Y., Sun, B., Zhang, H., Zhang, J., Zhu, Y., Du, M., Zhao, Y., Schartl, M., Tang, Q. & Wang, J., 2014, In: Nature Genetics. 46, 3, p. 253-262 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes

    Sun, Y., Xiong, Z., Xiang, X., Liu, S., Zhou, W., Tu, X., Zhong, L., Wang, L., Wu, D., Zhang, B., Zhu, C., Yang, M., Chen, H., Li, F., Zhou, L., Feng, S., Huang, C., Zhang, Guojie, Irwin, D., Hillis, D. M., Murphy, R. W., Yang, H., Che, J., Wang, J. & Zhang, Y., 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. E1257-E1262 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Whole-genome sequence variation, population structure and demographic history of the Dutch population

    Francioli, L. C., Menelaou, A., Pulit, S. L., Van Dijk, F., Palamara, P. F., Elbers, C. C., Neerincx, P. B. T., Ye, K., Guryev, V., Kloosterman, W. P., Deelen, P., Abdellaoui, A., Van Leeuwen, E. M., Van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Karssen, L. C., Kanterakis, A., Amin, N., Hottenga, J. J., Lameijer, E., Kattenberg, M., Dijkstra, M., Byelas, H., Van Settenl, J., Van Schaik, B. D. C., Bot, J., Nijman, I. J., Renkens, I., Marscha, T., Schonhuth, A., Hehir-Kwa, J. Y., Handsaker, R. E., Polak, P., Sohail, M., Vuzman, D., Hormozdiari, F., Van Enckevort, D., Mei, H., Koval, V., Moed, M. H., Van der Velde, K. J., Rivadeneira, F., Estrada, K., Medina-Gomez, C., Isaacs, A., McCarroll, S. A., Beekrnan, M., De Craen, A. J. M., Suchiman, H. E. D., Hofman, A., Oostra, B., Uitterlinden, A. G., Willemsen, G., Plattee, M., Veldink, J. H., Van den Berg, L. H., Pitts, S. J., Potluri, S., Sundar, P., Cox, D. R., Sunyaev, S. R., Den Dunnen, J. T., Stoneking, M., De Knijff, P., Kayser, M., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J., Bovenberg, J. A., Peer, I., Slagboom, P. E., Van Duijn, C. M., Boomsma, D. I., Van Ommen, G. B., De Bakker, P. I. W., Swertz, M. A. & Wijmenga, C., 2014, In: Nature Genetics. 46, 8, p. 818-825 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Whole-genome sequence-based analysis of thyroid function

    Taylor, P. N., Porcu, E., Chew, S., Campbell, P. J., Traglia, M., Brown, S. J., Mullin, B. H., Shihab, H. A., Min, J., Walter, K., Memari, Y., Huang, J., Barnes, M. R., Beilby, J. P., Charoen, P., Danecek, P., Dudbridge, F., Forgetta, V., Greenwood, C., Grundberg, E., Johnson, A. D., Hui, J., Lim, E. M., McCarthy, S., Muddyman, D., Panicker, V., Perry, J. R. B., Bell, J. T., Yuan, W., Relton, C., Gaunt, T., Schlessinger, D., Abecasis, G., Cucca, F., Surdulescu, G. L., Woltersdorf, W., Zeggini, E., Zheng, H. F., Toniolo, D., Dayan, C. M., Naitza, S., Walsh, J. P., Spector, T., Smith, G. D., Durbin, R., Richards, J. B., Sanna, S., Soranzo, N., Timpson, N. J., Wilson, S. G., Turki, S. A., Anderson, C., Anney, R., Antony, D., Artigas, M. S., Ayub, M., Balasubramaniam, S., Barrett, J. C., Barroso, I., Beales, P., Bentham, J., Bhattacharya, S., Birney, E., Blackwood, D., Bobrow, M., Bochukova, E., Bolton, P., Bounds, R., Boustred, C., Breen, G., Calissano, M., Carss, K., Chatterjee, K., Chen, L., Ciampi, A., Cirak, S., Clapham, P., Clement, G., Coates, G., Collier, D., Cosgrove, C., Cox, T., Craddock, N., Crooks, L., Curran, S., Curtis, D., Daly, A., Day-Williams, A., Day, I. N. M., Down, T., Du, Y., Dunham, I., Edkins, S., Ellis, P., Evans, D., Faroogi, S., Fatemifar, G., Fitzpatrick, D. R., Flicek, P., Flyod, J., Foley, A. R., Franklin, C. S., Futema, M., Gallagher, L., Geihs, M., Geschwind, D., Griffin, H., Grozeva, D., Guo, X., Guo, X., Gurling, H., Hart, D., Hendricks, A., Holmans, P., Howie, B., Huang, L., Hubbard, T., Humphries, S. E., Hurles, M. E., Hysi, P., Jackson, D. K., Jamshidi, Y., Jing, T., Joyce, C., Kaye, J., Keane, T., Keogh, J., Kemp, J., Kennedy, K., Kolb-Kokocinski, A., Lachance, G., Langford, C., Lawson, D., Lee, I., Lek, M., Liang, J., Lin, H., Li, R., Li, Y., Liu, R., Lönnqvist, J., Lopes, M., Lotchkova, V., MacArthur, D., Marchini, J., Maslen, J., Massimo, M., Mathieson, I., Marenne, G., McGuffin, P., McIntosh, A., McKechanie, A. G., McQuillin, A., Metrustry, S., Mitchison, H., Moayyeri, A., Morris, J., Muntoni, F., Northstone, K., O'Donnovan, M., Onoufriadis, A., O'Rahilly, S., Oualkacha, K., Owen, M. J., Palotie, A., Panoutsopoulou, K., Parker, V., Parr, J. R., Paternoster, L., Paunio, T., Payne, F., Pietilainen, O., Plagnol, V., Quaye, L., Quail, M. A., Raymond, L., Rehnström, K., Richards, B., Ring, S., Ritchie, G. R. S., Roberts, N., Savage, D. B., Scambler, P., Schiffels, S., Schmidts, M., Schoenmakers, N., Semple, R. K., Serra, E., Sharp, S. I., Shin, S. Y., Skuse, D., Small, K., Southam, L., Spasic-Boskovic, O., Clair, D. S., Stalker, J., Stevens, E., Pourcian, B. S., Sun, J., Suvisaari, J., Tachmazidou, I., Tobin, M. D., Valdes, A., Van Kogelenberg, M., Vijayarangakannan, P., Visscher, P. M., Wain, L. V., Walters, J. T. R., Wang, G., Wang, J., Wang, Y., Ward, K., Wheeler, E., Whyte, T., Williams, H., Williamson, K. A., Wilson, C., Wong, K., Xu, C. J., Yang, J., Zhang, F. & Zhang, P., 2015, In: Nature Communications. 6, 11 p., 5681.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Whole-genome sequences of DA and F344 rats with different susceptibilities to arthritis, autoimmunity, inflammation and cancer

    Guo, X., Brenner, M., Zhang, X., Laragione, T., Tai, S., Li, Y., Bu, J., Yin, Y., Shah, A. A., Kwan, K., Li, Y., Wang, J. & Gulko, P. S., 2013, In: Genetics. 194, 4, p. 1017-1028 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma

    Kan, Z., Zheng, H., Liu, X., Li, S., Barber, T. D., Gong, Z., Gao, H., Hao, K., Willard, M. D., Xu, J., Hauptschein, R., Rejto, P. A., Fernandez, J., Wang, G., Zhang, Q., Wang, B., Chen, R., Wang, J., Lee, N. P., Zhou, W., Lin, Z., Peng, Z., Yi, K., Chen, S., Li, L., Fan, X., Yang, J., Ye, R., Ju, J., Wang, K., Estrella, H., Deng, S., Wei, P., Qiu, M., Wulur, I. H., Liu, J., Ehsani, M. E., Zhang, C., Loboda, A., Sung, W. K., Aggarwal, A., Poon, R. T., Fan, S. T., Wang, J., Hardwick, J., Reinhard, C., Dai, H., Li, Y., Luk, J. M. & Mao, M., 2013, In: Genome Research. 23, p. 1422-1433 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review