Department of Biology

 

 
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  1. 2023
  2. E-pub ahead of print

    A novel protocol for rapid deployment of heart rate data storage tags in Atlantic bluefin tuna Thunnus thynnus reveals cardiac responses to temperature and feeding

    Rouyer, T., Bonhommeau, S., Bernard, S., Kerzerho, V., Derridj, O., Bjarnason, Allal, H., Steffensen, John Fleng, Deguara, S., Wendling, B., Bal, G., Thambithurai, D. & Mckenzie, D. J., 2023, (E-pub ahead of print) In: Journal of Fish Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A novel splice-affecting HNF1A variant with large population impact on diabetes in Greenland

    Thuesen, A. C. B., Stæger, F. F., Kaci, A., Solheim, M. H., Aukrust, I., Jørsboe, E., Santander, C. G., Andersen, M. K., Li, Z., Gilly, A., Stinson, S. E., Gjesing, A. P., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Grarup, N., Jørgensen, M. E., Zeggini, E., Bjørkhaug, L., Njølstad, P. R. & 3 others, Albrechtsen, Anders, Moltke, Ida & Hansen, Torben, 2023, In: The Lancet Regional Health - Europe. 24, 12 p., 100529.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A population of stem cells with strong regenerative potential discovered in deer antlers

    Qin, T., Zhang, G., Zheng, Y., Li, S., Yuan, Y., Li, Q., Hu, M., Si, H., Wei, G., Gao, X., Cui, X., Xia, B., Ren, J., Wang, K., Ba, H., Liu, Z., Heller, R., Li, Z., Wang, W., Huang, J. & 2 others, Li, C. & Qiu, Q., 2023, In: Science (New York, N.Y.). 379, 6634, p. 840-847 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A previously unrecognized superfamily of macro-conotoxins includes an inhibitor of the sensory neuron calcium channel Cav2.3

    Hackney, Celeste Menuet, Flórez Salcedo, P., Mueller, E., Koch, Thomas Lund, Kjelgaard, L. D., Watkins, M., Zachariassen, L., Tuelund, P. S., McArthur, J. R., Adams, D. J., Kristensen, Anders Skov, Olivera, B., Finol-Urdaneta, R. K., Safavi-Hemami, H., Morth, J. P. & Ellgaard, Lars, 2023, In: PLOS Biology. 21, 8, 32 p., e3002217.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A quantitative trait locus conferring flood tolerance to deepwater rice regulates the formation of two distinct types of aquatic adventitious roots

    Lin, C., Peralta Ogorek, Lucas León, Liu, D., Pedersen, Ole & Sauter, M., 2023, In: New Phytologist. 238, 4, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    A research agenda for nonvascular photoautotrophs under climate change

    Porada, P., Bader, M. Y., Berdugo, M. B., Colesie, C., Ellis, C. J., Giordani, P., Herzschuh, U., Ma, Y., Launiainen, S., Nascimbene, J., Petersen, I., Raggio Quílez, J., Rodríguez-Caballero, E., Rousk, K., Sancho, L. G., Scheidegger, C., Seitz, S., Van Stan, J. T., Veste, M., Weber, B. & 1 others, Weston, D. J., 2023, In: New Phytologist. 237, 5, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A review of open top chamber (OTC) performance across the ITEX Network

    Hollister, R. D., Elphinstone, C., Henry, G. H. R., Bjorkman, A. D., Klanderud, K., Bjoerk, R. G., Bjoerkman, M. P., Bokhorst, S., Carbognani, M., Cooper, E. J., Dorrepaal, E., Elmendorf, S. C., Fetcher, N., Gallois, E. C., Guomundsson, J., Healey, N. C., Jonsdottir, I. S., Klarenberg, I. J., Oberbauer, S. F., Macek, P. & 7 others, May, J. L., Mereghetti, A., Molau, U., Petraglia, A., Rinnan, Riikka, Rixen, C. & Wookey, P. A., 2023, In: Arctic Science. 9, 2, 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Published

    A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization

    Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, Yang, H., Wang, J., Seim, I. & Fan, G., 2023, In: Nature Communications. 14, 1, 15 p., 5630.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A single-chain variable fragment selected against a conformational epitope of a recombinantly produced snake toxin using phage display

    Rimbault, C., Knudsen, P. D., Damsbo, A., Boddum, K., Ali, H., Hackney, Celeste Menuet, Ellgaard, Lars, Bohn, M. & Laustsen, A. H., 2023, In: New Biotechnology. 76, p. 23-32 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A targeted multi-proteomics approach generates a blueprint of the ciliary ubiquitinome

    G. Aslanyan, M., Doornbos, C., D. Diwan, G., Anvarian, Zeinab, Beyer, T., Junger, K., E. C. van Beersum, S., Russell, R., Ueffing, M., Ludwig, A., Boldt, K., Pedersen, Lotte Bang & Roepman, R., 2023, In: Frontiers in Cell and Developmental Biology. 11, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A transcriptome-based phylogeny for Polynoidae (Annelida: Aphroditiformia)

    Gonzalez, B. C., González, V. L., Martínez, A., Worsaae, Katrine & Osborn, K. J., 2023, In: Molecular Phylogenetics and Evolution. 185, 11 p., 107811.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    A “grappling hook” interaction connects self-assembly and chaperone activity of Nucleophosmin 1

    Saluri, M., Leppert, A., Gese, G. V., Sahin, Cagla, Lama, D., Kaldmäe, M., Chen, G., Elofsson, A., Allison, T. M., Arsenian-henriksson, M., Johansson, J., Lane, D. P., Hällberg, B. M. & Landreh, M., 2023, In: PNAS Nexus. 2, 2, 9 p., pgac303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    ASSESSING CRYPTIC MARINE BIODIVERSITY: Environmental DNA detection, microhabitat dependences and functional ecology of cryptic fauna

    Brodnicke, O. B., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 120 p.

    Research output: Book/Report › Ph.D. thesis › Research

  15. Published

    Abrupt permafrost thaw triggers activity of copiotrophs and microbiome predators

    Scheel, M., Zervas, A., Rijkers, R., Tveit, A. T., Ekelund, Flemming, Campuzano Jiménez, F., Christensen, T. R. & Jacobsen, C. S., 2023, In: FEMS Microbiology Ecology. 99, 11, 12 p., fiad123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Accurate protein stability predictions from homology models

    Valanciute, A., Nygaard, L., Zschach, Henrike, Maglegaard Jepsen, M., Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 66-73 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Activation and substrate specificity of the human P4-ATPase ATP8B1

    Dieudonné, T., Kümmerer, Felix, Laursen, M. J., Stock, C., Flygaard, R. K., Khalid, S., Lenoir, G., Lyons, J. A., Lindorff-Larsen, Kresten & Nissen, P., 2023, In: Nature Communications. 14, 1, 14 p., 7492.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

    Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Adaptations of Pseudoxylaria towards a comb-associated lifestyle in fungus-farming termite colonies

    Fricke, J., Schalk, F., Kreuzenbeck, N. B., Seibel, E., Hoffmann, J., Dittmann, G., Conlon, B. H., Guo, H., Wilhelm de Beer, Z., Vassão, D. G., Gleixner, G., Poulsen, Michael & Beemelmanns, C., 2023, In: ISME Journal. 17, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Administration of vitamin E and C enhances immunological and biochemical responses against toxicity of silver nanoparticles in grass carp (Ctenopharyngodon idella)

    Iqbal, K. J., Majeed, H., Iqbal, K. J., Asghar, M., Azmat, H., Fatima, M., Khan, N., Baboo, I., Tehseen, A., Ali, W., Saeed, Usama, Khizar, A., Fatima, A., Nisa, S. & Davies, S. J., 2023, In: PLoS ONE. 18, 4, 21 p., e0284285.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Advances in mass spectrometry to unravel the structure and function of protein condensates

    Sahin, Cagla, Leppert, A. & Landreh, M., 2023, In: Nature Protocols. 18, p. 3653–3661 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Age-dependent changes in the gut microbiota and serum metabolome correlate with renal function and human aging

    Sun, L., Li, Z., Hu, C., Ding, J., Zhou, Q., Pang, G., Wu, Z., Yang, R., Li, S., Li, J., Cai, J., Sun, Y., Li, R., Zhen, H., Sun, S., Zhang, J., Fang, M., Chen, Z., Lv, Y., Cao, Q. & 36 others, Sun, Y., Gong, R., Huang, Z., Duan, Y., Liu, H., Dong, J., Li, J., Ruan, J., Lu, H., He, B., Li, N., Li, T., Xue, W., Li, Y., Shen, J., Yang, F., Zhao, C., Liang, Q., Zhang, M., Chen, C., Gong, H., Hou, Y., Wang, J., Zhang, Y., Yang, H., Zhu, S., Xiao, L., Jin, Z., Guo, H., Zhao, P., Brix, S., Xu, X., Jia, H., Kristiansen, Karsten, Yang, Z. & Nie, C., 2023, In: Aging Cell. 22, 12, 20 p., e14028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Allometric relationships between leaf and petiole traits across 31 floating-leaved plants reveal a different adaptation pattern from terrestrial plants

    Liu, Y., Liu, H., Båstrup-Spohr, Lars, Li, Z., Li, W., Pan, J. & Cao, Y., 2023, In: Annals of Botany. 131, 3, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Amino acids and the changing face of the α-cell

    Hamilton, Alexander, Eliasson, L. & Knudsen, Jakob Grunnet, 2023, In: Peptides. 166, 7 p., 171039.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    An insulin hypersecretion phenotype precedes pancreatic β cell failure in MODY3 patient-specific cells

    Hermann, F. M., Kjærgaard, M. F., Tian, C., Tiemann, Ulf, Jackson, Abigail Laura, Olsen, L. R., Kraft, M., Carlsson, P. O., Elfving, I. M., Kettunen, J. L. T., Tuomi, T., Novak, Ivana & Semb, Tor Henrik, 2023, In: Cell Stem Cell. 30, 1, p. 38-51.e8 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    An overview of plasmid transfer in the plant microbiome

    Sanchez Salazar, Angela Maria, Taparia, Tanvi, Olesen, Asmus Kalckar, Acuña, J. J., Sørensen, Søren Johannes & Jorquera, M. A., 2023, In: Plasmid. 127, 11 p., 102695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

    Louis, Marie Georgette Yolande J, Korlević, P., Nykänen, M., Archer, F., Berrow, S., Brownlow, A., Lorenzen, Eline, O'Brien, J., Post, K., Racimo, Fernando, Rogan, E., Rosel, P. E., Sinding, Mikkel Holger Strander, van der Es, H., Wales, N., Fontaine, M. C., Gaggiotti, O. E. & Foote, A. D., 2023, In: Nature Communications. 14, 13 p., 4020.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants

    von Bülow, Sören, Sikora, M., Blanc, F. E. C., Covino, R. & Hummer, G., 2023, In: PLOS Computational Biology. 19, 1, 15 p., e1010822.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Antifouling potential of enzymes applied to reverse osmosis membranes

    Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Application of whole genome sequencing data in population genetics: identifying sex-linked scaffolds and inferring admixture in a unique cattle population

    Nursyifa, Casia, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 225 p.

    Research output: Book/Report › Ph.D. thesis › Research

  31. Published

    Aquaporin water channels affect the response of conventional anticancer therapies of 3D grown breast cancer cells

    Edamana, S., Pedersen, Stine Helene Falsig & Nejsum, L. N., 2023, In: Biochemical and Biophysical Research Communications. 639, p. 126-133 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Aquatic Plants of Northern and Central Europe including Britain and Ireland: Monumental vandplantebog

    Bruun, Hans Henrik, 2023, In: Urt. 47, 3, p. 32-33 2 p.

    Research output: Contribution to journal › Literature review › Communication

  33. Published

    Assessment of models for calculating the hydrodynamic radius of intrinsically disordered proteins

    Pesce, Francesco, Newcombe, Estella Anne, Seiffert, P., Tranchant, E. E., Olsen, Johan Gotthardt, Grace, C. R., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2023, In: Biophysical Journal. 122, 2, p. 310-321 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Association of SLC12A1 and GLUR4 Ion Transporters with Neoadjuvant Chemoresistance in Luminal Locally Advanced Breast Cancer

    Justo-Garrido, M., López-Saavedra, A., Alcaraz, N., Cortés-González, C. C., Oñate-Ocaña, L. F., Caro-Sánchez, C. H. S., Castro-Hernández, C., Arriaga-Canon, C., Díaz-Chávez, J. & Herrera, L. A., 2023, In: International Journal of Molecular Sciences. 24, 22, 16 p., 16104.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Associational Resistance to Predation by Protists in a Mixed Species Biofilm

    Goh, Y. F., Røder, Henriette Lyng, Chan, S. H., Ismail, M. H., Madsen, Jonas Stenløkke, Lee, K. W. K., Sørensen, Søren Johannes, Givskov, Michael, Burmølle, Mette, Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Associative learning in the box jellyfish Tripedalia cystophora

    Bielecki, J., Dam Nielsen, S. K., Nachman, Gøsta Støger & Garm, Anders Lydik, 2023, In: Current Biology. 33, 19, p. 4150-4159.e5 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

    Weng, Z., Ruan, F., Chen, W., Chen, Z., Xie, Y., Luo, M., Xie, Z., Zhang, C., Wang, J., Sun, Y., Fang, Y., Guo, M., Tan, C., Chen, W., Tong, Y., Li, Y., Wang, H. & Tang, C., 2023, In: Genome Biology. 24, 1, 29 p., 61.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Bacterial bioindicators enable biological status classification along the continental Danube river

    Fontaine, L., Pin, L., Savio, D., Friberg, N., Kirschner, A. K. T., Farnleitner, A. H. & Eiler, A., 2023, In: Communications Biology . 6, 1, 11 p., 862.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs

    Camara, Sarah, Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, Jonas Stenløkke, Fineran, P. C., Sørensen, Søren Johannes & Pinilla Redondo, Rafael, 2023, In: Nature. 623, 7987, p. 601-607 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Basal level of ppGpp coordinates Escherichia coli cell heterogeneity and ampicillin resistance and persistence

    Grucela, Paulina Katarzyna & Zhang, Yong, 2023, In: Microbial Cell. 10, 11, p. 248-260 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Benchmarking RNA Editing Detection Tools

    Morales, D. R., Rennie, Sarah & Uchida, S., 2023, In: BioTech. 12, 3, 18 p., 56.

    Research output: Contribution to journal › Review › Research › peer-review

  42. Published

    Between inflammation, homeostasis and adaptation: Systemic and tissue-specific responses to maternal immune activation

    Hansen, Signe Schmidt Kjølner, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 177 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Bi-directional interactions between anti-diabetics and human gut microbiota

    Ren, H., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 108 p.

    Research output: Book/Report › Ph.D. thesis › Research

  44. Published

    Biofilm formation and cell plasticity drive diazotrophy in an anoxygenic phototrophic bacterium

    Fernandez Juarez, Victor, Hallstrøm, S., Pacherres, Cesar, Wang, J., Coll-Garcia, G., Kühl, Michael & Riemann, Lasse, 2023, In: Applied and Environmental Microbiology. 89, 11, p. 1-19 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention

    Kurth, J. K., Albrecht, M., Glaser, K., Karsten, U., Vestergaard, G., Armbruster, M., Kublik, S., Schmid, C. A. O., Schloter, M. & Schulz, S., 2023, In: Frontiers in Microbiology. 14, 16 p., 1169958.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Bowhead NEIL1: molecular cloning, characterization, and enzymatic properties

    Holm, S., Larsen, R. M., Holst, C. M., Heide-Jørgensen, M. P., Steffensen, John Fleng, Stevnsner, T. & Larsen, K., 2023, In: Biochimie. 206, p. 136-149 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Bridging the gap in African biodiversity genomics and bioinformatics

    Sharaf, A., Ndiribe, C. C., Omotoriogun, T. C., Abueg, L., Badaoui, B., Badiane Markey, F. J., Beedessee, G., Diouf, D., Duru, V. C., Ebuzome, C., Eziuzor, S. C., Jaufeerally Fakim, Y., Formenti, G., Ghanmi, N., Guerfali, F. Z., Houaga, I., Ideozu, J. E., Katee, S. M., Khayi, S., Kuja, J. O. & 16 others, Kwon-Ndung, E. H., Marks, R. A., Moila, A. M., Mungloo-Dilmohamud, Z., Muzemil, S., Nigussie, H., Osuji, J. O., Ras, V., Tchiechoua, Y. H., Zoclanclounon, Y. A. B., Tolley, K. A., Ziyomo, C., Mapholi, N., Muigai, A. W. T., Djikeng, A. & Ebenezer, T. G. E., 2023, In: Nature Biotechnology. 41, 9, p. 1348-1354 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network

    Pan, X., Ma, Z., Sun, X., Li, H., Zhang, T., Zhao, C., Wang, N., Heller, Rasmus, Hung Wong, W., Wang, W., Jiang, Y. & Wang, Y., 2023, In: Genomics, Proteomics and Bioinformatics. 21, 3, p. 632-648 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries

    Cachera, P., Olsson, H., Coumou, H., Jensen, M. L., Sánchez, B., Strucko, T., Van den broek, M., Daran, J., Jensen, M., Sonnenschein, N., Lisby, Michael & Mortensen, U., 2023, In: Nucleic acids symposium series. 51, 17, 14 p., e91.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis

    Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?

    Tong, Shuai, Ashikari, M., Nagai, K. & Pedersen, Ole, 2023, In: Rice. 16, 1, 20 p., 13.

    Research output: Contribution to journal › Review › Research › peer-review

  52. E-pub ahead of print

    Carbon and nitrogen uptake through photosynthesis and feeding by photosymbiotic Acantharia

    Mansour, J. S., Hansen, Per Juel, Leroux, C. & Not, F., 2023, (E-pub ahead of print) In: Open Research Europe.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Cationic amphiphilic antihistamines inhibit STAT3 via Ca2+-dependent lysosomal H+ efflux

    Liu, B., Chen, R., Zhang, Y., Huang, J., Luo, Y., Rosthøj, Susanne, Zhao, C. & Jaattela, Marja, 2023, In: Cell Reports. 42, 2, 20 p., 112137.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Cell Plasticity of Marine Mediterranean Diazotrophs to Climate Change Factors and Nutrient Regimes

    Fernandez Juarez, Victor, Zech, E. H., Pol-Pol, E. & Agawin, N. S. R., 2023, In: Diversity. 15, 3, 18 p., 316.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

    Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Changes in the functional diversity of modern bird species over the last million years

    Germain, Ryan Ross, Feng, S., Buffan, L., Carmona, C. P., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, Zhang, G. & Nogues, David Bravo, 2023, In: PNAS. 120, 7, 9 p., e2201945119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Characterization of industrially-produced Lacticaseibacillus rhamnosus GG and Lactobacillus acidophilus LA-5: Analysis of genomic integrity, transcriptome and phenotypes

    Strickertsson, Marianne Stage, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 206 p.

    Research output: Book/Report › Ph.D. thesis › Research

  58. Published

    Chemical Stimulation of Heterocyte Differentiation by the Feather Moss Hylocomium splendens: a Potential New Step in Plant-Cyanobacteria Symbioses

    Alvarenga, Danillo Oliveira, Elmdam, I. V., Timm, A. B. & Rousk, Kathrin, 2023, In: Microbial Ecology. 86, p. 419-430 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis)

    Sahu, S. K., Liu, M., Chen, Y., Gui, J., Fang, D., Chen, X., Yang, T., He, C., Cheng, L., Yang, J., Sahu, D. N., Li, L., Wang, H., Mu, W., Wei, J., Liu, J., Zhao, Y., Zhang, S., Lisby, M., Liu, X. & 4 others, Xu, X., Li, L., Wang, S. & Liu, Huan, 2023, In: Scientific Data. 10, 1, 13 p., 512.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Chromosome-scale genomes of commercially important mahoganies, Swietenia macrophylla and Khaya senegalensis

    Sahu, S. K., Liu, M., Wang, G., Chen, Y., Li, R., Fang, D., Sahu, D. N., Mu, W., Wei, J., Liu, J., Zhao, Y., Zhang, S., Lisby, Michael, Liu, X., Xu, X., Li, L., Wang, S., Liu, Huan & He, C., 2023, In: Scientific Data. 10, 9 p., 832.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Chronic acidosis rewires cancer cell metabolism through PPARα signaling

    Rolver, M. G., Holland, L. K. K., Ponniah, M., Prasad, N. S., Yao, Jiayi, Schnipper, J., Kramer, S., Elingaard-Larsen, L., Pedraz-Cuesta, E., Liu, B., Pardo, L. A., Maeda, K., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2023, In: International Journal of Cancer. 152, 8, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Cilia and flagella

    Pedersen, Lotte Bang, Jurisch-Yaksi, N., Schmid, F. M. & Christensen, Søren Tvorup, 2023, Encyclopedia of Cell Biology, Second Edition. Bradshaw, R. A., Hart, G. W. & Stahl, P. D. (eds.). 2 ed. Oxford: Elsevier, Vol. 3. p. 164-188 25 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  63. Published

    Circular and Circulating DNA in Inflammatory Bowel Disease: From Pathogenesis to Potential Molecular Therapies

    Di Vincenzo, F., Yadid, Y., Petito, V., Emoli, V., Masi, L., Gerovska, D., Araúzo-Bravo, M. J., Gasbarrini, A., Regenberg, Birgitte & Scaldaferri, F., 2023, In: Cells. 12, 15, 29 p., 1953.

    Research output: Contribution to journal › Review › Research › peer-review

  64. Published

    Clinical diagnosis of genetic disorders at both single-nucleotide and chromosomal levels based on BGISEQ-500 platform

    Liu, Y., Mao, L., Huang, H., Li, W., Man, J., Zhang, W., Wang, L., Li, L., Sun, Y., Zhai, T., Guo, X., Du, L., Huang, J., Li, H., Wan, Y. & Wei, X., 2023, In: Human Genome Variation. 10, 1, 43 p., 15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

    Research output: Working paper › Preprint › Research

  66. Published

    Cloning and deorphanization of three inotocin (insect oxytocin/vasopressin-like) receptors and their ligand from the tick Ixodes scapularis

    Hauser, Frank, Al-Ribaty, T., Stebegg, M., Thygesen, G. & Grimmelikhuijzen, Cornelis (Cok), 2023, In: Biochemical and Biophysical Research Communications. 680, p. 34-41 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Close coupling of plant functional types with soil microbial community composition drives soil carbon and nutrient cycling in tundra heath

    Koranda, M., Rinnan, Riikka & Michelsen, Anders, 2023, In: Plant and Soil. 488, p. 551-572 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Co-diversification of an intestinal Mycoplasma and its salmonid host

    Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. E-pub ahead of print

    Coexisting with carnivores: insights into local attitudes toward African wild dogs (Lycaon pictus) in the Maasai Mara, Kenya

    Cornu, L., Broekhuis, F., Kavwele, C. M., Mogensen, N., Sakat, D. & Briefer, Elodie, 2023, (E-pub ahead of print) In: Human Dimensions of Wildlife.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  70. Published

    Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo

    Quinn, Liam James Elgaard, Garcia Erill, Genís, Santander, Cindy, Brüniche-Olsen, Anna, Liu, Xiaodong, Sinding, Mikkel Holger Strander, Heaton, M. P., Smith, T. P. L., Chrzanová Pecnerová, Patrícia, Bertola, Laura, Hanghøj, Kristian Ebbesen, Rasmussen, Malthe Sebro, De Jager, Deon, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus & Moltke, Ida, 2023, In: Molecular Ecology. 32, 8, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Combining Experiments and Simulations to Examine the Temperature-Dependent Behavior of a Disordered Protein

    Pesce, Francesco & Lindorff-Larsen, Kresten, 2023, In: Journal of Physical Chemistry B. 127, 28, p. 6277-6286 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment

    Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology

    de Flamingh, A., Ishida, Y., Chrzanová Pecnerová, Patrícia, Vilchis, S., Siegismund, Hans Redlef, van Aarde, R. J., Malhi, R. S. & Roca, A. L., 2023, In: Frontiers in Genetics. 13, 14 p., 1021004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Comment on “Intrinsic protein disorder uncouples affinity from binding specificity”

    Teilum, Kaare, Olsen, Johan Gotthardt & Kragelund, Birthe Brandt, 2023, In: Protein Science. 32, 4, 2 p., e4602.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  75. Published

    Community dynamics and co-occurrence relationships of pelagic ciliates and their potential prey at a coastal and an offshore station in the ultra-oligotrophic Eastern Mediterranean Sea

    Romano, F., Pitta, P. & John, U., 2023, In: Frontiers in Genetics. 14, 15 p., 1219085.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Comparable early-stage decomposition but contrasting underlying drivers between surface and cave habitats along an elevational gradient

    Bodawatta, Kasun Harshana, Ravn, N., Oromí, P., Esquivel, J. L. M., Michelsen, Anders, Poulsen, Michael, Jønsson, Knud Andreas & Reboleira, Ana Sofia, 2023, In: Ecological Indicators. 154, 12 p., 110607.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds

    Salvà-Serra, F., Pérez-Pantoja, D., Donoso, R. A., Jaén-Luchoro, D., Fernandez Juarez, Victor, Engström-Jakobsson, H., Moore, E. R. B., Lalucat, J. & Bennasar-Figueras, A., 2023, In: Frontiers in Microbiology. 14, 19 p., 1159176.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Comparative genomics reveals the hybrid origin of a macaque group

    Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, Roos, C., Qi, X. G., Li, M., Liu, Z., Schierup, M. H., Cooper, D. N., Liu, J., Zheng, Y. T., KU, thw266 & Wu, D. D., 2023, In: Science Advances. 9, 22, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Comparative molecular and morphological species delineation of Halammohydra Remane, 1927 (Hydrozoa): with the description of four new species

    Tödter, L., Worsaae, Katrine & Schmidt-Rhaesa, A., 2023, In: Organisms Diversity and Evolution. 23, p. 455-476 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations

    Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Composition and distribution of diazotrophs in the Baltic Sea

    Salamon Slater, E. R., Turk-kubo, K. A., Hallstrøm, S., Kesy, K., Laas, P., Magasin, J., Zehr, J. P., Labrenz, M. & Riemann, Lasse, 2023, In: Estuarine, Coastal and Shelf Science. 294, 12 p., 108527.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Compositional breakpoints of freshwater plant communities across continents

    García-Girón, J., Heino, J., Båstrup-Spohr, Lars, Clayton, J., Winton, M. D., Feldmann, T., Fernández-Aláez, C., Ecke, F., Grillas, P., Hoyer, M. V., Kolada, A., Kosten, S., Lukács, B. A., Mjelde, M., Mormul, R. P., Rhazi, L., Rhazi, M., Sass, L., Xu, J. & Alahuhta, J., 2023, In: Limnetica. 42, 2, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Compromised junctional integrity phenocopies age-dependent renal dysfunction in Drosophila Snakeskin mutants

    Dornan, A. J., Halberg, Kenneth Veland, Beuter, L. K., Davies, S. A. & Dow, J. A. T., 2023, In: Journal of Cell Science. 136, 19, 15 p., jcs261118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Conformational and oligomeric states of SPOP from small-angle X-ray scattering and molecular dynamics simulations

    Thomasen, Emil, Cuneo, M. J., Mittag, T. & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 23 p., e84147.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Conformational entropy in molecular recognition of intrinsically disordered proteins

    Skriver, Karen, Theisen, Frederik Friis & Kragelund, Birthe Brandt, 2023, In: Current Opinion in Structural Biology. 83, 8 p., 102697.

    Research output: Contribution to journal › Review › Research › peer-review

  86. Published

    Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2002, 11 p., 20230988.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Congeneric temperate orchids recruit similar—yet differentially abundant—endophytic bacterial communities that are uncoupled from soil, but linked to host phenology and population size

    Kaur, J., Harder, Christoffer Bugge & Sharma, J., 2023, In: American Journal of Botany. 110, 5, 16 p., e16168.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Conjugative plasmids inhibit extracellular electron transfer in Geobacter sulfurreducens

    Fessler, M., Madsen, Jonas Stenløkke & Zhang, Y., 2023, In: Frontiers in Microbiology. 14, 12 p., 1150091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing

    Hernández-Alonso, G., Ramos-Madrigal, J., Sun, X., Scharff-Olsen, C. H., Sinding, M. H. S., Martins, N. F., Ciucani, M. M., Mak, S. S. T., Lanigan, L. T., Clausen, C. G., Bhak, J., Jeon, S., Kim, C., Eo, K. Y., Cho, S. H., Boldgiv, B., Gantulga, G., Unudbayasgalan, Z., Kosintsev, P. A., Stenøien, H. K. & 2 others, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: Ecology and Evolution. 13, 8, 15 p., e10404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. E-pub ahead of print

    Controlling biases in targeted plant removal experiments

    Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering & Väisänen, M., 2023, (E-pub ahead of print) In: New Phytologist.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Convergent molecular evolution of thermogenesis and circadian rhythm in Arctic ruminants

    Li, M., Li, X., Wu, Z., Zhang, G., Wang, N., Dou, M., Liu, S., Yang, C., Meng, G., Sun, H., Hvilsom, C., Xie, G., Li, Y., Li, Z. H., Wang, W., Jiang, Y., Heller, Rasmus & Wang, Y., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 1999, 10 p., 20230538.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Cooperative antibiotic resistance facilitates horizontal gene transfer

    Wang, Q., Wei, S., Silva, A. F. & Madsen, Jonas Stenløkke, 2023, In: ISME Journal. 17, 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Cooperative microbial interactions drive spatial segregation in porous environments

    Wu, Y., Fu, C., Peacock, C. L., Sørensen, Søren Johannes, Redmile-Gordon, M. A., Xiao, K. Q., Gao, C., Liu, J., Huang, Q., Li, Z., Song, P., Zhu, Y., Zhou, J. & Cai, P., 2023, In: Nature Communications. 14, 1, 14 p., 4226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Crosstalk between tumor acidosis, p53 and extracellular matrix regulates pancreatic cancer aggressiveness

    Czaplinska, D., Ialchina, Renata, Andersen, Henriette Berg, Yao, Jiayi, Stigliani, Arnaud, Dannesboe, Johs, Flinck, M., Chen, X., Mitrega, J., Gnosa, S. P., Dmytriyeva, O., Alves, F., Napp, J., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2023, In: International Journal of Cancer. 152, 6, p. 1210-1225 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Cultivation and sequencing of commensal bacteria of the human gut through culture-based and metagenomics analyses

    ZOU, Y., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/Report › Ph.D. thesis › Research

  96. Published

    DNA metabarcoding illuminates the contribution of small and very small prey taxa to the diet of lions

    Groen, K., Beekenkamp, S., de Iongh, H. H., Lesilau, F., Chege, M., Narisha, L., Veldhuis, M., Bertola, Laura, van Bodegom, P. M. & Trimbos, K. B., 2023, In: Environmental DNA. 5, 6, p. 1321-1331 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Deciphering regulatory mechanisms underlying gene co-activity

    van Duin, Lucas, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/Report › Ph.D. thesis › Research

  98. Published

    Decoupled phylogenetic and functional diversity in European grasslands

    Večeřa, M., Axmanová, I., Chytrý, M., Divíšek, J., Ndiribe, C., Mones, G. V., Čeplová, N., Aćić, S., Bahn, M., Bergamini, A., Boenisch, G., Biurrun, I., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Cornelissen, J. H. C., Dengler, J., Jansen, F., Jansen, S. & 17 others, Kattge, J., Kozub, Ł., Kuzemko, A., Minden, V., Mitchell, R. M., Moeslund, J. E., Mori, A. S., Niinemets, Ü., Ruprecht, E., Rusina, S., Šilc, U., Soudzilovskaia, N. A., van Bodegom, P. M., Vassilev, K., Weiher, E., Wright, I. J. & Lososová, Z., 2023, In: Preslia. 95, 4, p. 413-445 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Deep integrative models for large-scale human genomics

    Sigurdsson, Arnór Ingi, Louloudis, Ioannis, Banasik, Karina, Westergaard, David, Winther, Ole, Lund, O., Ostrowski, Sisse Rye, Erikstrup, C., Pedersen, Ole Birger Vesterager, Nyegaard, Mette, Brunak, Søren, Vilhjálmsson, B. & Rasmussen, Simon, 2023, In: Nucleic Acids Symposium Series. 51, 12, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem

    Brodnicke, O. B., Meyer, H. K., Busch, K., Xavier, J. R., Knudsen, Steen Wilhelm, Møller, Peter Rask, Hentschel, U. H. & Sweet, M. J., 2023, In: Environmental DNA. 5, 6, p. 1405-1417 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Deep-sequencing of viral genomes from a large and diverse cohort of treatment-naive HIV-infected persons shows associations between intrahost genetic diversity and viral load

    INSIGHT START Study Group, I. S. S. G., 2023, In: PLOS Computational Biology. 19, 1, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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