Department of Biology

 

 
  1. 2023
  2. Published

    The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge

    Lin, A. T., Hammond-Kaarremaa, L., Liu, H-L., Stantis, C., McKechnie, I., Pavel, M., Pavel, S. S. M., Wyss, S. S., Sparrow, D. Q., Carr, K., Aninta, S. G., Perri, A., Hartt, J., Bergström, A., Carmagnini, A., Charlton, S., Dalén, L., Feuerborn, T. R., France, C. A. M., Gopalakrishnan, S. & 13 others, Grimes, V., Harris, A., Kavich, G., Sacks, B. N., Sinding, Mikkel Holger Strander, Skoglund, P., Stanton, D. W. G., Ostrander, E. A., Larson, G., Armstrong, C. G., Frantz, L. A. F., Hawkins, M. T. R. & Kistler, L., 2023, In: Science. 382, 6676, p. 1303-1309 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  3. Published

    The impacts of the oil palm expansion on freshwater biodiversity and ecosystem functioning: The role of riparian buffers in mitigating stream biodiversity loss

    Rojas, Oscar, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 171 p.

    Research output: Book/ReportPh.D. thesis

  4. Published

    The infant gut virome is associated with preschool asthma risk independently of bacteria

    Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    The insect cryptonephridial complex

    Beaven, R., Halberg, Kenneth Veland & Denholm, B., 2023, In: Current Biology. 33, 14, p. R748-R749 2 p.

    Research output: Contribution to journalComment/debatepeer-review

  6. Published

    The landscape of tolerated genetic variation in humans and primates

    Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R., Balick, D. & 77 others, Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., do Amaral, J. V., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Bataillon, T., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Lek, M., Sunyaev, S., O'Donnell-Luria, A., Rehm, H. L., Xu, J., Rogers, J., Marques-Bonet, T. & Farh, K. K. H., 2023, In: Science (New York, N.Y.). 380, 6648, 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development

    Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    The mesoglea buffers the physico-chemical microenvironment of photosymbionts in the upside-down jellyfish Cassiopea sp.

    Lyndby, N. H., Murray, M. C., Trampe, Erik, Meibom, A. & Kühl, Michael, 2023, In: Frontiers in Ecology and Evolution. 11, 12 p., 1112742.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    The moonlighting of RAD23 in DNA repair and protein degradation

    Grønbæk-Thygesen, Martin, Kampmeyer, Caroline, Hofmann, K. & Hartmann-Petersen, Rasmus, 2023, In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1866, 2, 16 p., 194925.

    Research output: Contribution to journalReviewpeer-review

  10. Published

    The prolactin receptor scaffolds Janus kinase 2 via co-structure formation with phosphoinositide-4,5-bisphosphate

    Araya-Secchi, R., Bugge, K., Seiffert, P., Petry, A., Haxholm, G. W., Lindorff-Larsen, Kresten, Pedersen, Stine Helene Falsig, Arleth, Lise & Kragelund, Birthe Brandt, 2023, In: eLife. 12, 27 p., e84645.

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    The promoters of OsGLP genes exhibited differentially methylated sites under drought and salt stress in rice cultivars

    Anum, J., O’Shea, C., Skriver, Karen, Saeed, M., Hyder, M. Z., Farrakh, S. & Yasmin, T., 2023, In: Euphytica. 219, 4, 15 p., 42.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    The quantitative importance of key root traits for radial water loss under low water potential

    Song, Zhiwei, Zonta, F., Peralta Ogorek, Lucas León, Bastegaard, V. K., Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Plant and Soil. 482, 18 p.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    The recovery of European freshwater biodiversity has come to a halt

    Haase, P., Bowler, D. E., Baker, N. J., Bonada, N., Domisch, S., Garcia Marquez, J. R., Heino, J., Hering, D., Jähnig, S. C., Schmidt-Kloiber, A., Stubbington, R., Altermatt, F., Álvarez-Cabria, M., Amatulli, G., Angeler, D. G., Archambaud-Suard, G., Jorrín, I. A., Aspin, T., Azpiroz, I., Bañares, I. & 76 others, Ortiz, J. B., Bodin, C. L., Bonacina, L., Bottarin, R., Cañedo-Argüelles, M., Csabai, Z., Datry, T., de Eyto, E., Dohet, A., Dörflinger, G., Drohan, E., Eikland, K. A., England, J., Eriksen, T. E., Evtimova, V., Feio, M. J., Ferréol, M., Floury, M., Forcellini, M., Forio, M. A. E., Fornaroli, R., Friberg, N., Fruget, J. F., Georgieva, G., Goethals, P., Graça, M. A. S., Graf, W., House, A., Huttunen, K. L., Jensen, T. C., Johnson, R. K., Jones, J. I., Kiesel, J., Kuglerová, L., Larrañaga, A., Leitner, P., L’Hoste, L., Lizée, M. H., Lorenz, A. W., Maire, A., Arnaiz, J. A. M., McKie, B. G., Millán, A., Monteith, D., Muotka, T., Murphy, J. F., Ozolins, D., Paavola, R., Paril, P., Peñas, F. J., Pilotto, F., Polášek, M., Rasmussen, J. J., Rubio, M., Sánchez-Fernández, D., Sandin, L., Schäfer, R. B., Scotti, A., Shen, L. Q., Skuja, A., Stoll, S., Straka, M., Timm, H., Tyufekchieva, V. G., Tziortzis, I., Uzunov, Y., van der Lee, G. H., Vannevel, R., Varadinova, E., Várbíró, G., Velle, G., Verdonschot, P. F. M., Verdonschot, R. C. M., Vidinova, Y., Wiberg-Larsen, P. & Welti, E. A. R., 2023, In: Nature. 620, 7974, p. 582-588 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    The resilience journey of rice: Root traits, genome editing and silicon-mediated strategies for enhanced abiotic stress tolerance in rice

    Tong, Shuai, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/ReportPh.D. thesis

  15. Published

    The role of host pigments in coral photobiology

    Ferreira, G., Bollati, Elena & Kühl, Michael, 2023, In: Frontiers in Marine Science. 10, 14 p., 1204843.

    Research output: Contribution to journalReviewpeer-review

  16. Published

    The snowball Earth Hyphotesis - a Planet in the Fridge

    Houmark-Nielsen, Michael & Stouge, Svend, 2023, The Origins of All Things. Harper, D. A. T. & Seberg, O. (eds.). 1 ed. Copenhagen: Munksgaard , Vol. 1. p. 129-155 26 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterEducation

  17. Published

    Too late for regulatory management on Pacific oysters in European coastal waters?

    Hansen, B. W., Dolmer, P. & Vismann, B., 2023, In: Journal of Sea Research. 191, 13 p., 102331.

    Research output: Contribution to journalReviewpeer-review

  18. Published

    Towards a standardisation of morphological measurements in the phylum Kinorhyncha

    González-Casarrubios, A., Cepeda, D., Pardos, F., Neuhaus, B., Yamasaki, H., Herranz, Maria, Grzelak, K., Maiorova, A., Adrianov, A., Dal Zotto, M., Di Domenico, M., Landers, S. C. & Sánchez, N., 2023, In: Zoologischer Anzeiger. 302, p. 217-223 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning

    Horlacher, M., Wagner, N., Moyon, L., Kuret, K., Goedert, N., Salvatore, Marco, Ule, J., Gagneur, J., Winther, Ole & Marsico, A., 2023, In: Genome Biology. 24, 1, 37 p., 180.

    Research output: Contribution to journalJournal articlepeer-review

  20. Published

    Towards routine chromosome-scale haplotype-resolved reconstruction in cancer genomics

    Garg, S., 2023, In: Nature Communications. 14, 1, 11 p., 1358.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published
  23. Published

    Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Marsico, A., Winther, Ole & Andersson, Robin, 2023, In: NAR Genomics and Bioinformatics. 5, 2, 10 p., 026.

    Research output: Contribution to journalJournal articlepeer-review

  24. Published

    Treated like dirt: Robust forensic and ecological inferences from soil eDNA after challenging sample storage

    Frøslev, Tobias Guldberg, Ejrnæs, R., Hansen, Anders Johannes, Bruun, Hans Henrik, Nielsen, Ida Broman, Ekelund, Flemming, Vestergård, M. & Kjøller, Rasmus, 2023, In: Environmental DNA. 5, 1, p. 158-174 17 p.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    Tree species traits and mycorrhizal association shape soil microbial communities via litter quality and species mediated soil properties

    Heděnec, P., Zheng, H., Siqueira, D. P., Lin, Q., Peng, Y., Schmidt, Inger Kappel, Frøslev, Tobias Guldberg, Kjøller, Rasmus, Rousk, J. & Vesterdal, Lars, 2023, In: Forest Ecology and Management. 527, 15 p., 120608.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Two Novel α-Thalassemia Mutations CD 39 -C [Thr > Pro] and CD 109 ACC > CCC [Thr > Pro] Identified in Two Chinese Families: A Case Report

    Zhang, W., Han, X., Deng, J., Zhou, R., Du, X., Wu, C. & Li, M., 2023, In: Hemoglobin. 47, 4, 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  27. Published

    Tyrosine kinases compete for growth hormone receptor binding and regulate receptor mobility and degradation

    Chhabra, Y., Seiffert, P., Gormal, R. S., Vullings, M., Lee, C. M. M., Wallis, T. P., Dehkhoda, F., Indrakumar, S., Jacobsen, Nina Louise, Lindorff-Larsen, Kresten, Durisic, N., Waters, M. J., Meunier, F. A., Kragelund, Birthe Brandt & Brooks, A. J., 2023, In: Cell Reports. 42, 5, 26 p., 112490.

    Research output: Contribution to journalJournal articlepeer-review

  28. Published

    Ultrastructure and molecular phylogeny of Phalansterium foulumis sp. nov. (Amoebozoa Variosea)

    Karpov, S. A., Smakova, L. A., Malavin, S. A., Ekelund, Flemming & Smirnov, A. V., 2023, In: Protistology. 17, 3, p. 129-141 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  29. Published

    Uncertainty-aware and explainable machine learning for early prediction of battery degradation trajectory

    Rieger, L. H., Flores, E., Nielsen, K. F., Norby, P., Ayerbe, E., Winther, Ole, Vegge, T. & Bhowmik, A., 2023, In: Digital Discovery. 2, 1, p. 112-122 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  30. Published

    Uncovering spatiotemporal pattern of floods with Sentinel-1 synthetic aperture radar in major rice-growing river basins of Tanzania

    Sulle Michael, P., G. Sanga, H., J. Shitindi, M., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Earth Science. 11, 15 p., 1183834.

    Research output: Contribution to journalJournal articlepeer-review

  31. Published

    Underestimated Interannual Variability of Terrestrial Vegetation Production by Terrestrial Ecosystem Models

    Lin, S., Hu, Z., Wang, Y., Chen, X., He, B., Song, Z., Sun, S., Wu, C., Zheng, Y., Xia, X., Liu, L., Tang, Jing, Sun, Q., Joos, F. & Yuan, W., 2023, In: Global Biogeochemical Cycles. 37, 4, 15 p., e2023GB007696.

    Research output: Contribution to journalJournal articlepeer-review

  32. Published

    Understanding intrinsically disordered proteins: from integrative modelling to design

    Pesce, Francesco, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/ReportPh.D. thesis

  33. Published

    Understanding the Role of Individual Residues in Proteins: a Study of Missense Variants and their Impact on Function

    Cagiada, Matteo, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 155 p.

    Research output: Book/ReportPh.D. thesis

  34. Published

    Understory functional groups and fire history but not experimental warming drive tree seedling performance in unmanaged boreal forests

    Jessen, M. T., Krab, E. J., Lett, Signe, Nilsson, M., Teuber, L., Wardle, D. A. & Dorrepaal, E., 2023, In: Frontiers in Forests and Global Change. 6, 10 p., 1130532.

    Research output: Contribution to journalJournal articlepeer-review

  35. Published

    Unique horizontal gaze control in the box jellyfish, Tripedalia cystophora

    Wiisbye, S. H. & Garm, Anders Lydik, 2023, In: Vision Research. 203, 8 p., 108159.

    Research output: Contribution to journalJournal articlepeer-review

  36. Published

    Unlocking environmental archives in the Arctic—insights from modern diatom-environment relationships in lakes and ponds across Greenland

    Weckström, K., Weckström, J., Wischnewski, J., Davidson, T. A., Lauridsen, T. L., Landkildehus, F., Christoffersen, Kirsten Seestern & Jeppesen, E., 2023, In: Frontiers in Ecology and Evolution. 11, 15 p., 1177638.

    Research output: Contribution to journalJournal articlepeer-review

  37. Published

    Unraveling the genetic basis of neurological diseases and thalassemia: the clinical utility of high throughput sequencing

    ZHANG, W., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/ReportPh.D. thesis

  38. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journalReviewpeer-review

  39. Published

    Unravelling the intricate interplay between the membrane, kinases and the intracellular domains of class 1 cytokine receptors

    Seiffert, P., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 248 p.

    Research output: Book/ReportPh.D. thesis

  40. Published

    Unwrapping NPT Simulations to Calculate Diffusion Coefficients

    Bullerjahn, J. T., von Bülow, Sören, Heidari, M., Hénin, J. & Hummer, G., 2023, In: Journal of Chemical Theory and Computation. 19, 11, p. 3406-3417 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  41. Published

    Urbanization and the gut microbiota: A cross-sectional study in ethnicities living in southwest China

    Han, Mo, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 82 p.

    Research output: Book/ReportPh.D. thesis

  42. Published

    Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange

    Paerl, R. W., Curtis, N. P., Bittner, Meriel Jennifer, Cohn, M. R., Gifford, S. M., Bannon, C. C., Rowland, E. & Bertrand, E. M., 2023, In: mBio. 14, 4, 21 p.

    Research output: Contribution to journalJournal articlepeer-review

  43. Published

    Use of Probiotics to Control Biofilm Formation in Food Industries

    Tomé, A. R., Carvalho, F. M., Teixeira-Santos, R., Burmølle, Mette, Mergulhão, F. J. M. & Gomes, L. C., 2023, In: Antibiotics. 12, 4, 17 p., 754.

    Research output: Contribution to journalReviewpeer-review

  44. Published

    Using eDNA to find Micrognathozoa

    Giribet, G., Wangensteen, O. S., Garcés-Pastor, S., Møller, Peter Rask & Worsaae, Katrine, 2023, In: Current Biology. 33, 14, p. R756-R757

    Research output: Contribution to journalJournal articlepeer-review

  45. Published

    Vandkraft Versus Vandmiljø: Et opløftende eksempel fra De italienske Alper

    Scotti, A., Bottarin, R. & Jacobsen, Dean, 2023, In: Aktuel Naturvidenskab. 4, p. 38-42 5 p.

    Research output: Contribution to journalJournal article

  46. Published

    Variation of extrachromosomal circular DNA in cancer cell lines

    dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  47. Published

    Variational Open-Domain Question Answering

    Liévin, V., Motzfeldt, A. G., Jensen, I. R. & Winther, Ole, 2023, In: Proceedings of Machine Learning Research. 202, p. 20950-20977 28 p.

    Research output: Contribution to journalConference articlepeer-review

  48. Published

    Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

    Sahu, N., Indic, B., Wong-Bajracharya, J., Merényi, Z., Ke, H. M., Ahrendt, S., Monk, T. L., Kocsubé, S., Drula, E., Lipzen, A., Bálint, B., Henrissat, B., Andreopoulos, B., Martin, F. M., Bugge Harder, C., Rigling, D., Ford, K. L., Foster, G. D., Pangilinan, J., Papanicolaou, A. & 14 others, Barry, K., LaButti, K., Virágh, M., Koriabine, M., Yan, M., Riley, R., Champramary, S., Plett, K. L., Grigoriev, I. V., Tsai, I. J., Slot, J., Sipos, G., Plett, J. & Nagy, L. G., 2023, In: Nature Microbiology. 8, 27 p.

    Research output: Contribution to journalJournal articlepeer-review

  49. Published

    Vitamin B1 Dynamics in Coastal Waters

    Bittner, Meriel Jennifer, 2023, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesis

  50. Published

    Vocal interactivity in-and-between humans, animals and robots

    Chetouani, M., Briefer, Elodie, Dassow, A., Marxer, R., Moore, R. K., Obin, N. & Stowell, D., 2023, In: Interaction Studies. 24, 1, p. 1-4 4 p.

    Research output: Contribution to journalEditorialpeer-review

  51. Published

    Volatile organic compound release across a permafrost-affected peatland

    Jiao, Yi, Davie-Martin, Cleo Lisa, Kramshøj, M., Christiansen, C. T., Lee, H., Althuizen, I. H. J. & Rinnan, Riikka, 2023, In: Geoderma. 430, 10 p., 116355.

    Research output: Contribution to journalJournal articlepeer-review

  52. Published

    Volatile responses of dwarf birch to mimicked insect herbivory and experimental warming at two elevations in Greenlandic tundra

    Rieksta, Jolanta, Li, T., Davie-Martin, Cleo Lisa, Aeppli, L. C. B., Høye, T. T. & Rinnan, Riikka, 2023, In: Plant-Environment Interactions. 4, 1, 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  53. Published

    WASCO: A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins

    González-Delgado, J., Sagar, A., Zanon, C., Lindorff-Larsen, Kresten, Bernadó, P., Neuvial, P. & Cortés, J., 2023, In: Journal of Molecular Biology. 435, 14, 11 p., 168053.

    Research output: Contribution to journalJournal articlepeer-review

  54. Published

    Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea and fungi) - With potential implications for ecosystem functioning

    Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, Lorrie, Sørensen, Søren Johannes, Urich, T. & Weigel, R., 2023, In: Environmental Microbiology. 25, 6, 18 p.

    Research output: Contribution to journalJournal articlepeer-review

  55. Published

    Warming, permafrost thaw and increased nitrogen availability as drivers for plant composition and growth across the Tibetan Plateau

    Yun, Hanbo, Zhu, Q., Tang, Jing, Zhang, W., Chen, D., Ciais, P., Wu, Q. & Elberling, Bo, 2023, In: Soil Biology and Biochemistry. 182, 9 p., 109041.

    Research output: Contribution to journalJournal articlepeer-review

  56. Published

    When gluttony strikes: how high-fat diet impairs hepatic Ca2+ signalling

    Merrild, C. & Johansen, Valdemar Brimnes Ingemann, 2023, In: Journal of Physiology. 601, 12, p. 2245-2247

    Research output: Contribution to journalComment/debatepeer-review

  57. Published

    When less is more: shortening the Lpp protein leads to increased vancomycin resistance in Escherichia coli

    Wykes, H., Le, Van Hung Vuong, Olivera, Catrina Diane Peralta & Rakonjac, J., 2023, In: Journal of Antibiotics. 76, p. 746-750 5 p.

    Research output: Contribution to journalJournal articlepeer-review

  58. Published

    Where are we now with European forest multi-taxon biodiversity and where can we head to?

    Burrascano, S., Chianucci, F., Trentanovi, G., Kepfer-Rojas, S., Sitzia, T., Tinya, F., Doerfler, I., Paillet, Y., Nagel, T. A., Mitic, B., Morillas, L., Munzi, S., Van der Sluis, T., Alterio, E., Balducci, L., de Andrade, R. B., Bouget, C., Giordani, P., Lachat, T., Matosevic, D. & 117 others, Napoleone, F., Nascimbene, J., Paniccia, C., Roth, N., Aszalós, R., Brazaitis, G., Cutini, A., D'Andrea, E., De Smedt, P., Heilmann-Clausen, Jacob, Janssen, P., Kozák, D., Mårell, A., Mikoláš, M., Nordén, B., Matula, R., Schall, P., Svoboda, M., Ujhazyova, M., Vandekerkhove, K., Wohlwend, M., Xystrakis, F., Aleffi, M., Ammer, C., Archaux, F., Asbeck, T., Avtzis, D., Ayasse, M., Bagella, S., Balestrieri, R., Barbati, A., Basile, M., Bergamini, A., Bertini, G., Biscaccianti, A. B., Boch, S., Bölöni, J., Bombi, P., Boscardin, Y., Brunialti, G., Bruun, Hans Henrik, Buscot, F., Byriel, David Bille, Campagnaro, T., Campanaro, A., Chauvat, M., Ciach, M., Čiliak, M., Cistrone, L., Pereira, J. M. C., Daniel, R., De Cinti, B., De Filippo, G., Dekoninck, W., Di Salvatore, U., Dumas, Y., Elek, Z., Ferretti, F., Fotakis, D., Frank, T., Frey, J., Giancola, C., Gomoryová, E., Gosselin, M., Gosselin, F., Gossner, M. M., Götmark, F., Haeler, E., Hansen, A. K., Hertzog, L., Hofmeister, J., Hošek, J., Johannsen, VK, Justesen, Mathias Just, Korboulewsky, N., Kovács, B., Lakatos, F., Landivar, C. M., Lens, L., Lingua, E., Lombardi, F., Máliš, F., Marchino, L., Marozas, V., Matteucci, G., Mattioli, W., Møller, P. F., Müller, J., Németh, C., Ónodi, G., Parisi, F., Perot, T., Perret, S., Persiani, A. M., Portaccio, A., Posillico, M., Preikša, Ž., Rahbek, Carsten, Rappa, N. J., Ravera, S., Romano, A., Samu, F., Scheidegger, C., Schmidt, Inger Kappel, Schwegmann, S., Sicuriello, F., Spinu, A. P., Spyroglou, G., Stillhard, J., Topalidou, E., Tøttrup, Anders P., Ujházy, K., Veres, K., Verheyen, K., Weisser, W. W., Zapponi, L. & Ódor, P., 2023, In: Biological Conservation. 284, 13 p., 110176.

    Research output: Contribution to journalReviewpeer-review

  59. Published

    Where is the field of autophagy research heading?

    Abeliovich, H., Debnath, J., Ding, W. X., Jackson, W. T., Kim, D. H., Klionsky, D. J., Ktistakis, N., Margeta, M., Münz, C., Petersen, Morten, Sadoshima, J. & Vergne, I., 2023, In: Autophagy. 19, 4, 6 p.

    Research output: Contribution to journalEditorial

  60. Published

    Xenobiotic Exposure and Migraine-Associated Signaling: A Multimethod Experimental Study Exploring Cellular Assays in Combination with Ex Vivo and In Vivo Mouse Models

    Rasmussen, Rikke Holm, Christensen, S. L., Callø, Kirstine, Nielsen, B. S., Rehfeld, A., Taylor-Clark, T. E., Haanes, Kristian Agmund, Taboureau, O., Audouze, K., Klærke, Dan Arne, Olesen, Jes & Kristensen, D. M., 2023, In: Environmental Health Perspectives. 131, 11, 14 p., 117003.

    Research output: Contribution to journalJournal articlepeer-review

  61. Published

    ZGRF1 Contributes to DNA Repair, Secondary DNA Structure Regulation, and Transcriptional Alteration

    Simonsen, Anne Katrine Wrist, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 153 p.

    Research output: Book/ReportPh.D. thesis

  62. Published

    cAMP competitively inhibits periplasmic phosphatases to coordinate nutritional growth with competence of Haemophilus influenzae

    Kronborg, Kristina & Zhang, Yong, 2023, In: Journal of Biological Chemistry. 299, 12, 13 p., 105404.

    Research output: Contribution to journalJournal articlepeer-review

  63. Published

    pXOOY: A dual-function vector for expression of membrane proteins in Saccharomyces cerevisiae and Xenopus laevis oocytes

    Vold, Victoria Amstrup, Glanville, S., Klærke, Dan Arne & Pedersen, Per Amstrup, 2023, In: PLoS ONE. 18, 2, 16 p., e0281868.

    Research output: Contribution to journalJournal articlepeer-review

  64. Published

    tRNAs Are Stable After All: Pitfalls in Quantification of tRNA from Starved Escherichia coli Cultures Exposed by Validation of RNA Purification Methods

    Prossliner, T., Agrawal, S., Heidemann, Ditte Fogh, Sorensen, M. A. A. & Svenningsen, Sine Lo, 2023, In: mBio. 14, 1, 18 p., e02805-22.

    Research output: Contribution to journalJournal articlepeer-review

  65. Published

    基于 QMEC 分析的青藏高原不同类型冰川前缘地土壤微生物功能潜力

    Zhang, J. J., Priemé, Anders, Chen, X. K., Zhou, H. C., Zhang, Q. W., Zhuang, X. L., Qin, X., Zhuang, G. Q. & Ma, A. Z., 2023, In: Huanjing Kexue/Environmental Science. 44, 1, p. 512-519 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  66. 2022
  67. Published

    Review: The evolution of peptidergic signaling in Cnidaria and Placozoa, including a comparison with Bilateria

    Hauser, Frank, Koch, T. L. & Grimmelikhuijzen, Cornelis (Cok), Sep 2022, In: Frontiers in Endocrinology. 13, 18 p., 973862.

    Research output: Contribution to journalReviewpeer-review

  68. Published

    Extensive inheritance of gut microbial communities in a superorganismal termite

    Sinotte, Veronica Marie, Renelies-Hamilton, J., Andreu-Sánchez, S., Vasseur-Cognet, M. & Poulsen, Michael, 30 Aug 2022, Research Square-Preprint, 34 p.

    Research output: Working paperPreprintResearch

  69. Published

    Trans- and Within-Generational Developmental Plasticity May Benefit the Prey but Not Its Predator during Heat Waves

    Walzer, A., Nachman, Gøsta Støger, Spangl, B., Stijak, M. & Tscholl, T., Aug 2022, In: Biology. 11, 8, 20 p., 1123.

    Research output: Contribution to journalJournal articlepeer-review

  70. Published

    The effect of short-term temperature exposure on vital physiological processes of mixoplankton and protozooplankton

    Ferreira, G. D., Grigoropoulou, A., Saiz, E. & Calbet, A., Jul 2022, In: Marine Environmental Research. 179, 10 p., 105693.

    Research output: Contribution to journalJournal articlepeer-review

  71. Published

    UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions

    Rodríguez Mestre, Mario, Gao, L. A., Shah, S. A., López-Beltrán, A., González-Delgado, A., Martínez-Abarca, F., Iranzo, J., Redrejo-Rodríguez, M., Zhang, F. & Toro, N., 24 Jun 2022, In: Nucleic Acids Research. 50, 11, p. 6084-6101 18 p.

    Research output: Contribution to journalJournal articlepeer-review

  72. Published

    Naturpligt skal sikre mere og vildere natur i Danmark

    Baaner, Lasse, Bruun, Hans Henrik, Vejre, Henrik, Møller, Peter Rask, Båstrup-Spohr, Lars, Krøijer, Stine, Larsen, K. C., Kjøller, Rasmus, Strange, Niels, Jepsen, Martin Rudbeck & Heilmann-Clausen, Jacob, 3 Jun 2022, Altinget.dk.

    Research output: Other contributionNet publication - Internet publicationCommunication

  73. Published

    Lektor til Dansk Skovforening: Nej, skovrejsning er ikke godt for grundvandet

    Bruun, Hans Henrik, 31 May 2022, In: Altinget Miljø.

    Research output: Contribution to journalContribution to newspaper - Comment/debate

  74. Published
  75. Published

    Lektor: Skovrejsning er værdiløs som klimaløsning

    Bruun, Hans Henrik, 23 May 2022, In: Altinget Miljø.

    Research output: Contribution to journalContribution to newspaper - Comment/debate

  76. Published

    Distinct Survival, Growth Lag, and rRNA Degradation Kinetics during Long-Term Starvation for Carbon or Phosphate

    Himeoka, Y., Gummesson, Bertil, Sørensen, Michael Askvad, Svenningsen, Sine Lo & Mitarai, Namiko, 20 Apr 2022, In: mSphere. 7, 3, 12 p., e01006-21.

    Research output: Contribution to journalJournal articlepeer-review

  77. Published

    Investigating the value of immersive virtual reality tools for organizational training: An applied international study in the biotech industry

    Baceviciute, S., Cordoba, A. L., Wismer, P., Jensen, T. V., Klausen, M. & Makransky, Guido, Apr 2022, In: Journal of Computer Assisted Learning. 38, 2, p. 470-487

    Research output: Contribution to journalJournal articlepeer-review

  78. Published

    Biologer: Sådan sikrer vi biodiversiteten ved vådlægning af lavbundsjorde

    Bruun, Hans Henrik & Sand-Jensen, Kaj, 8 Mar 2022, In: Altinget.

    Research output: Contribution to journalContribution to newspaper - Comment/debate

  79. Published

    Ecdysone coordinates plastic growth with robust pattern in the developing wing

    Alves, A. N., Oliveira, M. M., Koyama, Takashi, Shingleton, A. & Mirth, C. K., Mar 2022, In: eLife. 11, 24 p., e72666.

    Research output: Contribution to journalJournal articlepeer-review

  80. Published

    (180-183) Proposals to amend Article 40.1 and Article 44.1 and to add a new Article 44.3 and a Note to facilitate the valid publication of names of "dinoflagellates"

    Woelkerling, W. J. & Moestrup, Øjvind, 2022, In: Taxon. 71, 6, p. 1337-1338 2 p.

    Research output: Contribution to journalComment/debate

  81. Published

    (2872) Proposal to conserve the name Huea (Ascomycota: Teloschistales) with a conserved type

    Fryday, A. M., Søchting, Ulrik, Bungartz, F. & Perlmutter, G., 2022, In: Taxon. 71, 2, p. 465-466 2 p.

    Research output: Contribution to journalComment/debatepeer-review

  82. Published

    (2873) Proposal to conserve the name Ceratellopsis with a conserved type (Basidiomycota: Agaricales)

    Olariaga, I., Huhtinen, S., Læssøe, Thomas, Petersen, J. H., Hansen, K. & Parra, L. A., 2022, In: Taxon. 71, 2, p. 467-468 2 p.

    Research output: Contribution to journalComment/debatepeer-review

  83. Published

    (2874–2877) Proposals to conserve the names Typhula with a conserved type, Macrotyphula against Sclerotium, and Phyllotopsidaceae against Sclerotiaceae, and to reject the name Sclerotium fulvum (Basidiomycota: Agaricales): Agaricales)

    Olariaga, I., Huhtinen, S., Læssøe, Thomas, Petersen, J. H., Hansen, K. & Parra, L. A., 2022, In: Taxon. 71, 2, p. 468-470 3 p.

    Research output: Contribution to journalComment/debatepeer-review

  84. Published

    14-fold increased prevalence of rare glucokinase gene variant carriers in unselected Danish patients with newly diagnosed type 2 diabetes

    Gjesing, A. P., Engelbrechtsen, L., Cathrine B. Thuesen, A., Have, C. T., Hollensted, M., Grarup, N., Linneberg, A., Steen Nielsen, J., Christensen, L. B., Thomsen, R. W., Johansson, K. E., Cagiada, M., Gersing, S., Hartmann-Petersen, R., Lindorff-Larsen, K., Vaag, A., Sørensen, H. T., Brandslund, I., Beck-Nielsen, H., Pedersen, O. & 2 others, Rungby, Jørgen & Hansen, Torben, 2022, In: Diabetes Research and Clinical Practice. 194, 9 p., 110159.

    Research output: Contribution to journalJournal articlepeer-review

  85. Published

    2022 BMC Ecology and Evolution image competition: the winning images

    Harman, J., Hipsley, Christy Anna, Jacobus, L. M., Liberles, D. A., Settele, J. & Traulsen, A., 2022, In: BMC Ecology and Evolution. 22, 6 p., 99.

    Research output: Contribution to journalEditorialpeer-review

  86. Published

    3D-Structured Illumination Microscopy of Centrosomes in Human Cell Lines

    Frikstad, K. M., Schink, K. O., Gilani, S., Pedersen, Lotte Bang & Patzke, S., 2022, In: Bio-protocol. 12, 6, 14 p., 4360.

    Research output: Contribution to journalJournal articlepeer-review

  87. Published

    C-locked analogs of the antimicrobial peptide BP214

    Andersen, I. K. L., Thomsen, T. T., Rashid, J., Bobak, T. R., Oddo, A., Franzyk, Henrik, Løbner-Olesen, Anders & Hansen, Paul Robert, 2022, In: Antibiotics. 11, 8, 10 p., 1080.

    Research output: Contribution to journalJournal articlepeer-review

  88. Published

    Escherichia coli protein synthesis is limited by mRNA availability rather than ribosomal capacity during phosphate starvation

    Espinosa, R., Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2022, In: Frontiers in Microbiology. 13, 13 p., 989818.

    Research output: Contribution to journalJournal articlepeer-review

  89. Published

    Ex vivo Release of Calcitonin Gene-Related Peptide from the Trigeminovascular System in Rodents

    Rasmussen, R. H., Jansen-Olesen, I., Kristensen, D. M. & Christensen, S. L., 2022, In: Journal of Visualized Experiments. 183, 19 p., e63723.

    Research output: Contribution to journalJournal articlepeer-review

  90. Published

    In Vitro Characterization of a Threonine-Ligated Molybdenyl-Sulfide Cluster as a Putative Cyanide Poisoning Antidote: Intracellular Distribution, Effects on Organic Osmolyte Homeostasis, and Induction of Cell Death

    Gretarsdottir, J. M., Lambert, Ian Henry, Stürup, Stefan & Suman, S. G., 2022, In: ACS Pharmacology and Translational Science. 5, 10, p. 907–918

    Research output: Contribution to journalJournal articlepeer-review

  91. Published

    In Vitro Evolution of Specific Phages Infecting the Fish Pathogen Flavobacterium psychrophilum

    Castillo, D., Højsting, A. R., Roosvall, A., Smyrlis, G., Jørgensen, J. & Middelboe, Mathias, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 28-37 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  92. Published

    In vitro digestion mimicking conditions in young and elderly reveals marked differences between profiles and potential bioactivity of peptides from meat and soy proteins

    Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Food Research International. 157, 11 p., 111215.

    Research output: Contribution to journalJournal articlepeer-review

  93. Published

    In vivo, genome-wide profiling of endogenously tagged chromatin-binding proteins with spatial and temporal resolution using NanoDam in Drosophila

    Tang, J. L. Y., Krautz, Robert, Llorà-Batlle, O., Hakes, A. E., Fox, P. M. & Brand, A. H., 2022, In: STAR Protocols. 3, 4, 30 p., 101788.

    Research output: Contribution to journalJournal articlepeer-review

  94. Published

    Setaphyes algarvensis sp. nov., the first description of an allomalorhagid mud dragon (Kinorhyncha: Allomalorhagida) from Portugal (Eastern Atlantic Ocean)

    Gonzalez-Casarrubios, A., Cepeda, D., Pardos, F., Neves, R. C. & Sanchez, N., 2022, In: European Journal of Taxonomy. 821, p. 150-165 16 p.

    Research output: Contribution to journalJournal articlepeer-review

  95. Published

    A Bacterial Genome and Culture Collection of Gut Microbial in Weanling Piglet

    Dong, B., Lin, X., Jing, X., Hu, T., Zhou, J., Chen, J., Xiao, L., Wang, B., Chen, Z., Liu, J., Hu, Y., Liu, G., Liu, S., Liu, J., Wei, W. & Zou, Y., 2022, In: Microbiology Spectrum. 10, 1, 13 p., e02417-21.

    Research output: Contribution to journalJournal articlepeer-review

  96. Published

    A Bayesian Belief Network learning tool integrates multi-scale effects of riparian buffers on stream invertebrates

    Forio, M. A. E., Burdon, F. J., De Troyer, N., Lock, K., Witing, F., Baert, L., De Saeyer, N., Risnoveanu, G., Popescu, C., Kupilas, B., Friberg, N., Boets, P., Johnson, R. K., Volk, M., McKie, Brendan Gerard & Goethals, P. L. M., 2022, In: Science of the Total Environment. 810, 11 p., 152146.

    Research output: Contribution to journalJournal articlepeer-review

  97. Published

    A Comparative Analysis of Weizmannia coagulans Genomes Unravels the Genetic Potential for Biotechnological Applications

    Aulitto, M., Martinez Alvarez, Laura, Fiorentino, G., Limauro, D., Peng, Xu & Contursi, P., 2022, In: International Journal of Molecular Sciences . 23, 6, 23 p., 3135.

    Research output: Contribution to journalJournal articlepeer-review

  98. Published

    A DNA barcode survey of insect biodiversity in Pakistan

    Ashfaq, M., Khan, A. M., Rasool, A., Akhtar, S., Nazir, N., Ahmed, N., Manzoor, F., Sones, J., Perez, K., Sarwar, G., Khan, A. A., Akhter, M., Saeed, S., Sultana, R., Tahir, H. M., Rafi, M. A., Iftikhar, R., Naseem, M. T., Masood, M., Tufail, M. & 8 others, Kumar, S., Afzal, S., McKeown, J., Samejo, A. A., Khaliq, I., D'Souza, M. L., Mansoor, S. & Hebert, P. D. N., 2022, In: PeerJ. 10, 19 p., e13267.

    Research output: Contribution to journalJournal articlepeer-review

  99. Published

    A Dilp8-dependent time window ensures tissue size adjustment in Drosophila

    Blanco-Obregon, D., Marzkioui, K. E., Brutscher, F., Kapoor, V., Valzania, L., Andersen, Ditte Skovaa, Colombani, Julien, Narasimha, S., McCusker, D., Léopold, P. & Boulan, L., 2022, In: Nature Communications. 13, 10 p., 5629.

    Research output: Contribution to journalJournal articlepeer-review

  100. Published

    A catalog of 48,425 nonredundant viruses from oral metagenomes expands the horizon of the human oral virome

    Li, S., Guo, R., Zhang, Y., Li, P., Chen, F., Wang, X., Li, J., Jie, Zhuye, Lv, Q., Jin, H., Wang, G. & Yan, Q., 2022, In: iScience. 25, 6, 18 p., 104418.

    Research output: Contribution to journalJournal articlepeer-review

  101. Published

    A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics

    Mao, Y. & KU, thw266, 2022, In: Nature Methods. 19, 6, p. 635-638 4 p.

    Research output: Contribution to journalComment/debatepeer-review

  102. Published

    A context-dependent and disordered ubiquitin-binding motif

    Dreier, Jesper Elmsted, Prestel, Andreas, Martins, J. M., Brøndum, S. S., Nielsen, Olaf, Garbers, Anna Engstrøm, Suga, H., Boomsma, Wouter, Rogers, Joseph Matthew, Hartmann-Petersen, Rasmus & Kragelund, Birthe Brandt, 2022, In: Cellular and molecular life sciences : CMLS. 79, 9, 21 p., 484.

    Research output: Contribution to journalJournal articlepeer-review

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