Department of Biology

Organisation profile

 

 
  1. 2021
  2. Published

    Community-wide changes reflecting bacterial interspecific interactions in multispecies biofilms

    Sadiq, F. A., Burmølle, Mette, Heyndrickx, M., Flint, S., Lu, W., Chen, W., Zhao, J. & Zhang, H., 2021, In: Critical Reviews in Microbiology. 47, 3, p. 338-358 21 p.

    Research output: Contribution to journalReviewResearchpeer-review

  3. Published

    Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production

    Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures

    Gupta, S., Shariff, M., Chaturvedi, G., Sharma, A., Goel, N., Yadav, M., Mortensen, M. S., Sørensen, Søren Johannes, Mukerji, M. & Chauhan, N. S., 2021, In: Scientific Reports. 11, 11 p., 3963.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. E-pub ahead of print

    Comparative bioacoustics: a roadmap for quantifying and comparing animal sounds across diverse taxa

    Odom, K. J., Araya-Salas, M., Morano, J. L., Ligon, R. A., Leighton, G. M., Taff, C. C., Dalziell, A. H., Billings, A. C., Germain, Ryan Ross, Pardo, M., de Andrade, L. G., Hedwig, D., Keen, S. C., Shiu, Y., Charif, R. A., Webster, M. S. & Rice, A. N., 2021, (E-pub ahead of print) In: Biological Reviews. 25 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection

    Salgado-Albarrán, M., Navarro-Delgado, E. I., Del Moral-Morales, A., Alcaraz, N., Baumbach, J., González-Barrios, R. & Soto-Reyes, E., 2021, In: n p j Systems Biology and Applications. 7, 14 p., 21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Comprehensive analysis of genetic and clinical characteristics of 30 patients with X-linked juvenile retinoschisis in China

    Gao, F., Dong, J., Wang, D., Chen, F., Hu, F., Chang, Q., Xu, P., Liu, W., Li, J., Huang, Y., Wu, J. & Xu, G., 2021, In: Acta Ophthalmologica. 99, 4, p. e470-e479 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Computational methods for chromosome-scale haplotype reconstruction

    Garg, Shilpa, 2021, In: Genome Biology. 22, 24 p., 101.

    Research output: Contribution to journalReviewResearchpeer-review

  9. Published

    Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations

    Bottaro, Sandro, Bussi, G. & Lindorff-Larsen, Kresten, 2021, In: Journal of the American Chemical Society. 143, 22, p. 8333-8343

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Connecting the αα-hubs: same fold, disordered ligands, new functions

    Staby, L., Bugge, Katrine, Falbe-Hansen, Rasmus Greve, Salladini, E., Skriver, Karen & Kragelund, Birthe Brandt, 2021, In: Cell Communication and Signaling. 19, 5 p., 2.

    Research output: Contribution to journalLetterResearchpeer-review

  11. Published

    Conservation of Long-tailed Macaques: Implications of the Updated IUCN Status and the CoVID-19 Pandemic

    Hansen, M. F., Gill, M., Nawangsari, V. A., Sanchez, K. L., Cheyne, S. M., Nijman, V. & Fuentes, A., 2021, In: Primate Conservation. 35, 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Conservative route to genome compaction in a miniature annelid

    Martín-Durán, J. M., Vellutini, B. C., Marlétaz, F., Cetrangolo, V., Cvetesic, N., Thiel, D., Henriet, S., Grau-Bové, X., Carrillo-Baltodano, A. M., Gu, W., Kerbl, A., Marquez, Y., Bekkouche, N., Chourrout, D., Gómez-Skarmeta, J. L., Irimia, M., Lenhard, B., Worsaae, Katrine & Hejnol, A., 2021, In: Nature Ecology and Evolution. 5, 2, p. 231-242

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Contingency and determinism in the evolution of bird song sound frequency

    Friis, J. I., Dabelsteen, Torben & Cardoso, G. C., 2021, In: Scientific Reports. 11, 9 p., 11600.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Contrasting responses of major and minor volatile compounds to warming and gall-infestation in the Arctic willow Salix myrsinites

    Swanson, L., Li, Tao & Rinnan, Riikka, 2021, In: Science of the Total Environment. 793, 10 p., 148516.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. E-pub ahead of print

    Contrasting use of space by two migratory Afro-Palearctic warblers on their African non-breeding grounds

    Mostafa, D. A. A., Willemoes, M., Salewski, V., Ortvad, T. E., Dabelsteen, Torben & Thorup, Kasper, 2021, (E-pub ahead of print) In: Journal of Ornithology. 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Contributions to OH reactivity from unexplored volatile organic compounds measured by PTR-ToF-MS – a case study in a suburban forest of the Seoul metropolitan area during the Korea–United States Air Quality Study (KORUS-AQ) 2016

    Sanchez, D., Seco, Roger, Gu, D., Guenther, A., Mak, J., Lee, Y., Kim, D., Ahn, J., Blake, D., Herndon, S., Jeong, D., Sullivan, J. T., Mcgee, T., Park, R. & Kim, S., 2021, In: Atmospheric Chemistry and Physics. 21, 8, p. 6331-6345 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Crustacean Fauna of the Aral Sea and its Relation to Ichthyofauna During the Modern Regression Crisis and Efforts at Restoration

    Plotnikov, I. S., Aladin, N. V., Mossin, J. & Høeg, J. T., 2021, In: Zoological Studies. 60, 24 p., 25.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published
  19. Published

    DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles

    Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Wang, Yong, Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: PLOS Computational Biology. 17, 1, 18 p., e1008551.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    DNA Double-Strand Break-Induced Gene Amplification in Yeast

    Strucko, T., Lisby, Michael & Mortensen, U. H., 2021, Homologous Recombination: Methods and Protocols. Aguilera, A. & Carreira, A. (eds.). Humana Press, p. 239-252 14 p. (Methods in Molecular Biology, Vol. 2153).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  21. Published

    Deconstructing transcriptional variations and their effects on immunomodulatory function among human mesenchymal stromal cells

    Sun, C., Zhang, K., YUE, Jianhui, Meng, S. & Zhang, X., 2021, In: Stem Cell Research & Therapy. 12, 16 p., 53.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Description of a new species and new records of Gerromorpha (Insecta: Hemiptera: Heteroptera) from Panama and Colombia

    Rodrigues, J. M. D. S., Crumière, A. J. J., Mondragón-F, S. P., Morales, I., Khila, A. & Moreira, F. F. F., 2021, In: Zootaxa. 4958, 1, p. 226-251 26 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Developmental trajectory of the healthy human gut microbiota during the first 5 years of life

    Roswall, J., Olsson, L. M., Kovatcheva-Datchary, P., Nilsson, S., Tremaroli, V., Simon, M., Kiilerich, P., Akrami, R., Kramer, M., Uhlen, M., Gummesson, A., Kristiansen, Karsten, Dahlgren, J. & Bäckhed, Gert Fredrik, 2021, In: Cell Host & Microbe. 29, 5, p. 765-776.e3 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Dimensions of invasiveness: Links between local abundance, geographic range size, and habitat breadth in Europe's alien and native floras

    Fristoe, T. S., Chytrý, M., Dawson, W., Essl, F., Heleno, R., Kreft, H., Maurel, N., Pergl, J., Pyšek, P., Seebens, H., Weigelt, P., Vargas, P., Yang, Q., Attorre, F., Bergmeier, E., Bernhardt-Römermann, M., Biurrun, I., Boch, S., Bonari, G., Botta-Dukát, Z., Bruun, Hans Henrik, Byun, C., Carni, A., Carranza, M. L., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cušterevska, R., De Ronde, I., Dengler, J., Golub, V., Haveman, R., Hough-Snee, N., Jandt, U., Jansen, F., Kuzemko, A., Küzmic, F., Lenoir, J., MacAnovic, A., Marcenò, C., Martin, A. R., Michaletz, S. T., Mori, A. S., Niinemets, Ü., Peterka, T., Pielech, R., Rašomavicius, V., Rusina, S., Dias, A. S., Sibíková, M., Silc, U., Stanisci, A., Jansen, S., Svenning, J., Swacha, G., Van Der Plas, F., Vassilev, K. & Van Kleunen, M., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 22, 11 p., e2021173118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Disorder in a two-domain neuronal Ca2+-binding protein regulates domain stability and dynamics using ligand mimicry

    Staby, L., Kemplen, K. R., Stein, Amelie, Ploug, Michael, Clarke, J., Skriver, Karen, Heidarsson, P. O. & Kragelund, Birthe Brandt, 2021, In: Cellular and molecular life sciences : CMLS. 78, p. 2263-2278 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories

    Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, J., Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Divergent expression of hypoxia response systems under deoxygenation in reef-forming corals aligns with bleaching susceptibility

    Alderdice, R., Suggett, D. J., Cárdenas, A., Hughes, D. J., Kühl, Michael, Pernice, M. & Voolstra, C. R., 2021, In: Global Change Biology. 27, 2, p. 312-326 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Do environmental pharmaceuticals affect the composition of bacterial communities in a freshwater stream? A case study of the Knivsta river in the south of Sweden

    Hagberg, A., Gupta, S., Rzhepishevska, O., Fick, J., Burmølle, Mette & Ramstedt, M., 2021, In: Science of the Total Environment. 763, 10 p., 142991.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Accepted/In press

    Don’t drink it, bury it: comparing decomposition rates with the tea bag index is possible without prior leaching

    Blume-Werry, G., Di Maurizio, V., Beil, I., Lett, Signe, Schwieger, S. & Kreyling, J., 2021, (Accepted/In press) In: Plant and Soil. 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Draft Genome Sequence of a Polymyxin-Resistant Klebsiella pneumoniae Clinical Strain Carrying mcr-8.1 and blaNDM-5

    Pei, Na, Jian, Z., Liu, Y., Liang, T., Liu, W. & Li, J., 2021, In: Microbiology resource announcements. 10, 12, 2 p., e01224-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Drosophila TNFRs Grindelwald and Wengen bind Eiger with different affinities and promote distinct cellular functions

    Palmerini, V., Monzani, S., Laurichesse, Quentin Charles B, Loudhaief, Rihab, Mari, S., Cecatiello, V., Olieric, V., Pasqualato, S., Colombani, Julien, Andersen, Ditte Skovaa & Mapelli, M., 2021, In: Nature Communications. 12, 12 p., 2070.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Dual skin functions in amphibian osmoregulation

    Larsen, Erik Hviid, 2021, In: Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology. 253, 8 p., 110869.

    Research output: Contribution to journalReviewResearchpeer-review

  33. Published
  34. Published

    Dynamic evolution of transposable elements, demographic history, and gene content of paleognathous birds

    Wang, Z., Chen, G., Zhang, Guojie & Zhou, Q., 2021, In: Zoological Research. 42, 1, p. 51-61 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Dynamics of volatile organic compounds in a western Mediterranean oak forest

    Yáñez-serrano, A. M., Bach, A., Bartolomé-català, D., Matthaios, V., Seco, Roger, Llusia, J., Filella, I. & Peñuelas, J., 2021, In: Atmospheric Environment. 257, 118447.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. E-pub ahead of print

    Effect of metformin and insulin vs. placebo and insulin on whole body composition in overweight patients with type 2 diabetes: a randomized placebo-controlled trial

    Nordklint, A. K., Almdal, Thomas Peter, Vestergaard, P., Lundby-Christensen, L., Boesgaard, T. W., Breum, Leif, Gade-Rasmussen, B., Sneppen, S. B., Gluud, C., Hemmingsen, B., Perrild, Hans, Madsbad, Sten, Mathiesen, Elisabeth, Tarnow, L., Thorsteinsson, B., drb459, drb459, Lund, S. S. & Eiken, P., 2021, (E-pub ahead of print) In: Osteoporosis International.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Effects of dispersal strategy and migration history on genetic diversity and population structure of Antarctic lichens

    Lagostina, E., Andreev, M., Dal Grande, F., Grewe, F., Lorenz, A., Lumbsch, H. T., Rozzi, R., Ruprecht, U., Sancho, L. G., Søchting, Ulrik, Scur, M., Wirtz, N. & Printzen, C., 2021, In: Journal of Biogeography. 48, 7, p. 1635-1653 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Effects of latitude and conspecific plant density on insect leaf herbivory in oak saplings and seedlings

    Moreira, X., Abdala-Roberts, L., De Frenne, P., Galmán, A., Gaytán, Á., Jaatinen, R., Lago-Núñez, B., Meeussen, C., Pulkkinen, P., Rasmussen, P. U., Ten Hoopen, J. P. J. G., Timmermans, B. G. H., Vázquez-González, C., Bos, Nicky Peter Maria, Castagneyrol, B. & Tack, A. J. M., 2021, In: American Journal of Botany. 108, 1, p. 172-176 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Efficient Production of Pyruvate Using Metabolically Engineered Lactococcus lactis

    Suo, F., Liu, J., Chen, J., Li, Xuan Ji, Solem, C. & Jensen, P. R., 2021, In: Frontiers in Bioengineering and Biotechnology. 8, 12 p., 611701.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Elusive cats in our backyards: persistence of the North Chinese leopard (Panthera pardus japonensis) in a human-dominated landscape in central China

    Yang, H., Xie, Bing, Zhao, G., Gong, Y., Mou, P., Ge, J. & Feng, L., 2021, In: Integrative Zoology. 16, 1, p. 67-83 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Accepted/In press

    Endocrine regulation of immunity in insects

    Nunes, C., Sucena, É. & Koyama, T., 2021, (Accepted/In press) In: FEBS Journal. 20 p.

    Research output: Contribution to journalReviewResearchpeer-review

  42. Published

    Energy Starvation Induces a Cell Cycle Arrest in Escherichia coli by Triggering Degradation of the DnaA Initiator Protein

    Charbon, Godefroid, Mendoza-Chamizo, B., Campion, Christopher, Li, X., Jensen, P. R., Frimodt-Møller, J. & Løbner-Olesen, Anders, 2021, In: Frontiers in Molecular Biosciences. 8, 9 p., 629953.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning

    Xiang, X., Corsi, Giulia, Anthon, Christian, Qu, Kunli, Pan, X., Liang, Xue, Han, Peng, Dong, Z., Liu, L., Zhong, J., Ma, T., Wang, J., Zhang, X., Jiang, H., Xu, F., Liu, X., Xu, X., Wang, J., Yang, H., Bolund, L., Church, G. M., Lin, L., Gorodkin, Jan & Luo, Y., 2021, In: Nature Communications. 12, 1, 9 p., 3238.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Errantia incertae sedis: Nerillidae Levinsen, 1883

    Worsaae, Katrine, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 215-228 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  45. Published

    Evaluating competition for forage plants between honey bees and wild bees in Denmark

    Rasmussen, C., Dupont, Y. L., Madsen, Henning Bang, Bogusch, P., Goulson, D., Herbertsson, L., Maia, K. P., Nielsen, A., Olesen, J. M., Potts, S. G., Roberts, S. P. M., Kjær Sydenham, M. A. & Kryger, P., 2021, In: PLoS ONE. 16, 4, 19 p., e0250056.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Evidence for large microbial-mediated losses of soil carbon under anthropogenic warming

    García-Palacios, P., Crowther, T. W., Dacal, M., Hartley, I. P., Reinsch, S., Rinnan, Riikka, Rousk, J., van den Hoogen, J., Ye, J. & Bradford, M. A., 2021, In: Nature Reviews Earth & Environment. 2, 7, p. 507-517

    Research output: Contribution to journalReviewResearchpeer-review

  47. Published

    Evolution of A bHLH Interaction Motif

    Millard, Peter Sørensen, Kragelund, Birthe Brandt & Burow, Meike, 2021, In: International Journal of Molecular Sciences. 22, 1, 18 p., 447.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Evolutionary and biomedical insights from a marmoset diploid genome assembly

    Yang, Chentao, Zhou, Y., Marcus, S., Formenti, G., Bergeron, L. A., Song, Z., Bi, X., Bergman, J., Rousselle, M. M. C., Zhou, C., Zhou, L., DENG, Yuan, Fang, M., Xie, D., Zhu, Y., Tan, S., Mountcastle, J., Haase, B., Balacco, J., Wood, J., Chow, W., Rhie, A., Pippel, M., Fabiszak, M. M., Koren, S., Fedrigo, O., Freiwald, W. A., Howe, K., Yang, H., Phillippy, A. M., Schierup, M. H., Jarvis, E. D. & Zhang, Guojie, 2021, In: Nature. 594, p. 227-233

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

    Li, L., Nesme, J., Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Zhuofeng, Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Extension of Plant Phenotypes by the Foliar Microbiome

    Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Female-biased sex allocation and lack of inbreeding avoidance in Cubitermes termites

    Sinotte, Veronica Marie, Schantz-Conlon, Benjamin, Seibel, E., Schwitalla, J. W., de Beer, Z. W., Poulsen, Michael & Bos, Nicky Peter Maria, 2021, In: Ecology and Evolution. 11, 10, p. 5598-5605 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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