Department of Biology

Organisation profile

 

 
  1. 2021
  2. Published

    Oxygen in the air and oxygen dissolved in the floodwater both sustain growth of aquatic adventitious roots in rice

    Lin, C., Peralta Ogorek, Lucas León, Pedersen, Ole & Sauter, M., 2021, In: Journal of Experimental Botany. 72, 5, p. 1879-1890 eraa542.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Parathyroid hormone receptor stimulation induces human adipocyte lipolysis and browning

    Breining, P., Pedersen, S. B., Kjolby, M., Hansen, Jacob B., Jessen, N. & Richelsen, B., 2021, In: European Journal of Endocrinology. 184, 5, p. 687-697 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Pedigree-based estimation of germline mutation rates in vertebrates and the evolutionary implication

    Bergeron, L. A., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 341 p.

    Research output: Book/ReportPh.D. thesisResearch

  5. Published

    Personality-dependent inter- and intraspecific foraging competition in the invasive round goby, Neogobius melanostomus

    Ericsson, P., Persson, A., Behrens, J. W., Brodin, T., Hirsch, P. E., Sundelin, A., van Deurs, M., Winberg von Friesen, Lisa & Nilsson, P. A., 2021, In: Journal of Fish Biology. 98, 5, p. 1234-1241 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Phage-Mediated Control of Flavobacterium psychrophilum in Aquaculture: In vivo Experiments to Compare Delivery Methods

    Donati, V. L., Dalsgaard, I., Sundell, K., Castillo, D., Er-Rafik, M., Clark, J., Wiklund, T., Middelboe, Mathias & Madsen, L., 2021, In: Frontiers in Microbiology. 12, 16 p., 628309.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Phenological stage of tundra vegetation controls bidirectional exchange of BVOCs in a climate change experiment on a subarctic heath

    Baggesen, Nanna Schrøder, Li, Tao, Seco, Roger, Holst, T., Michelsen, Anders & Rinnan, Riikka, 2021, In: Global Change Biology. 27, 12, p. 2928-2944 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Platypus and echidna genomes reveal mammalian biology and evolution

    Zhou, Y., Shearwin-Whyatt, L., Li, J., Song, Z., Hayakawa, T., Stevens, D., Fenelon, J. C., Peel, E., Cheng, Y., Pajpach, F., Bradley, N., Suzuki, H., Nikaido, M., Damas, J., Daish, T., Perry, T., Zhu, Z., Geng, Y., Rhie, A., Sims, Y., Wood, J., Haase, B., Mountcastle, J., Fedrigo, O., Li, Q., Yang, H., Wang, J., Johnston, S. D., Phillippy, A. M., Howe, K., Jarvis, E. D., Ryder, O. A., Kaessmann, H., Donnelly, P., Korlach, J., Lewin, H. A., Graves, J., Belov, K., Renfree, M. B., Grutzner, F., Zhou, Q. & Zhang, Guojie, 2021, In: Nature. 592, 7856, p. 756-762

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Polyamines are Required for tRNA Anticodon Modification in Escherichia coli

    Winther, K. S., Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2021, In: Journal of Molecular Biology. 433, 15, 14 p., 167073.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Population Bottlenecks and Intra-host Evolution During Human-to-Human Transmission of SARS-CoV-2

    Wang, D., Wang, Y., Sun, W., Zhang, L., Ji, J., Zhang, Z., Cheng, X., Li, Y., Xiao, F., Zhu, A., Zhong, B., Ruan, S., Li, J., Ren, P., Ou, Z., Xiao, M., Li, M., Deng, Z., Zhong, H., Li, F., Wang, W., Zhang, Y., Chen, W., Zhu, S., Xu, X., Jin, X., Zhao, J., Zhong, N., Zhang, W., Zhao, J., Li, J. & Xu, Y., 2021, In: Frontiers in Medicine. 8, 7 p., 585358.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Population ecology, growth, and physico-chemical habitat of anadromous European perch Perca fluviatilis

    Christensen, E. A. F., Svendsen, M. B. S. & Steffensen, John Fleng, 2021, In: Estuarine, Coastal and Shelf Science. 249, 8 p., 107091.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Predictors and trajectories of treatment response to SSRIs in patients suffering from PTSD

    Nøhr, Anne Krogh, Eriksson, H., Hobart, M., Moltke, Ida, Buller, R., Albrechtsen, Anders & Lindgreen, Stinus, 2021, In: Psychiatry Research. 301, 8 p., 113964.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Prevalence and genetic-phenotypic characteristics of patients with USH2A mutations in a large cohort of Chinese patients with inherited retinal disease

    Gao, F., Wang, D., Chen, F., Sun, H., Hu, F., Xu, P., Li, J., Liu, W., Qi, Y., Li, W., Wang, M., Zhang, S., Xu, G., Chang, Q. & Wu, J., 2021, In: British Journal of Ophthalmology. 105, 1, p. 87-92 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Properdin oligomers adopt rigid extended conformations supporting function

    Pedersen, D. V., Pedersen, M. N., Mazarakis, S. M. M., Wang, Yong, Lindorff-Larsen, Kresten, Arleth, Lise & Andersen, G. R., 2021, In: eLife. 10, 22 p., e63356.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Proteomics reveals synergy between biomass degrading enzymes and inorganic Fenton chemistry in leaf-cutting ant colonies

    Schiøtt, M. & Boomsma, Koos, 2021, In: eLife. 10, 21 p., e61816.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Protodrilidae Hatschek, 1888

    Martínez, A., Purschke, G. & Worsaae, Katrine, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 299-337 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  17. Published

    Protodriloididae Purschke & Jouin, 1988

    Martínez, A., Worsaae, Katrine & Purschke, G., 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 338-353 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  18. Published

    Putting Warburg to work: how imaging of tumour acidosis could help predict metastatic potential in breast cancer

    Rolver, Michala Gylling & Pedersen, Stine Helene Falsig, 2021, In: British Journal of Cancer. 124, p. 1-2 2 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  19. Published

    Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles

    Chakraborty, S., Andersen, K. H., Visser, A. W., Inomura, K., Follows, M. J. & Riemann, Lasse, 2021, In: Nature Communications. p. 1-14 12:4085.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    RNA sequencing and proteomic profiling reveal different alterations by dietary methylmercury in the hippocampal transcriptome and proteome in BALB/c mice

    Mellingen, R. M., Myrmel, L. S., Lie, K. K., Rasinger, J. D., Madsen, L. & Nøstbakken, O. J., 2021, In: Metallomics : integrated biometal science. 13, 5, 12 p., mfab022.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Rad52 SUMOylation functions as a molecular switch that determines a balance between the Rad5- and Rad59-dependent survivors

    Charifi, F., Churikov, D., Eckert-Boulet, N., Minguet, C., Jourquin, F., Hardy, J., Lisby, Michael, Simon, M. N. & Géli, V., 2021, In: iScience. 24, 3, 26 p., 102231.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems

    Cerecetto, V., Smalla, K., Nesme, J., Garaycochea, S., Fresia, P., Sørensen, Søren Johannes, Babin, D. & Leoni, C., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab023.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Reducing the rate of psychiatric re-admissions in bipolar disorder using smartphones - The RADMIS trial

    Faurholt-Jepsen, M., Tønning, Morten Lindbjerg, Fros, M., Martiny, Klaus, Tuxen, N., Rosenberg, N., Busk, J., Winther, Ole, Thaysen-Petersen, D., Aamund, K. A., Tolderlund, L., Bardram, J. E. & Kessing, Lars Vedel, 2021, In: Acta Psychiatrica Scandinavica. 143, 5, p. 453-465 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Refinement of α-Synuclein Ensembles Against SAXS Data: Comparison of Force Fields and Methods

    Ahmed, M. C., Skaanning, L. K., Jussupow, A., Newcombe, Estella Anne, Kragelund, Birthe Brandt, Camilloni, C., Langkilde, Annette Eva & Lindorff-Larsen, Kresten, 2021, In: Frontiers in Molecular Biosciences. 8, 13 p., 654333.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Regulate or tolerate: Thermal strategy of a coral reef flat resident, the epaulette shark, Hemiscyllium ocellatum

    Nay, T. J., Longbottom, R. J., Gervais, C. R., Johansen, J. L., Steffensen, John Fleng, Rummer, J. L. & Hoey, A. S., 2021, In: Journal of Fish Biology. 98, 3, p. 723-732 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Regulation of root adaptive anatomical and morphological traits during low soil oxygen

    Pedersen, Ole, Sauter, M., Colmer, T. D. & Nakazono, M., 2021, In: New Phytologist. 229, 1, p. 42-49 8 p.

    Research output: Contribution to journalReviewResearchpeer-review

  27. Published

    Relaxed selection underlies genome erosion in socially parasitic ant species

    Schrader, L., Pan, H., Bollazzi, M., Schiøtt, M., Larabee, F. J., Bi, X., Deng, Y., Zhang, Guojie, Boomsma, Koos & Rabeling, C., 2021, In: Nature Communications. 12, 13 p., 2918.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Residual biomass from surfactin production is a source of arginase and adsorbed surfactin that is useful for environmental remediation

    Silveira, T. D. C., Gomes, W. E., Tonon, G. C., Beatto, T. G., Spogis, N., Cunha, L. H. D., Lattaro, B. P., Nogueira, A. B., Mendes, R. K., Alvarenga, Danillo Oliveira & Etchegaray, A., 2021, In: World Journal of Microbiology and Biotechnology. 37, 7, 12 p., 123.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Role of the Neutral Amino Acid Transporter SLC7A10 in Adipocyte Lipid Storage, Obesity, and Insulin Resistance

    Jersin, R. Å., Tallapragada, D. S. P., Madsen, A., Skartveit, L., Fjære, E., McCann, A., Dyer, L., Willems, A., Bjune, J., Bjune, M. S., Våge, V., Nielsen, H. J., Thorsen, H. L., Nedrebø, B. G., Busch, C., Steen, V. M., Blüher, M., Jacobson, P., Svensson, P., Fernø, J., Rydén, M., Arner, P., Nygård, O., Claussnitzer, M., Ellingsen, S., Madsen, L., Sagen, J. V., Mellgren, G. & Dankel, S. N., 2021, In: Diabetes. 70, 3, p. 680-695 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis

    Balbín-Suárez, A., Jacquiod, S., Rohr, A. D., Liu, B., Flachowsky, H., Winkelmann, T., Beerhues, L., Nesme, J., Sørensen, Søren Johannes, Vetterlein, D. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 4, 14 p., fiab031.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Root length is proxy for high-throughput screening of waterlogging tolerance in Urochloa spp. grasses

    Jiménez, J. D. L. C., Cardoso, J. A., Kotula, L., Veneklaas, E. J., Pedersen, Ole & Colmer, T. D., 2021, In: Functional Plant Biology. 48, 4, p. 411-421 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    SOAPMetaS: profiling large metagenome datasets efficiently on distributed clusters

    He, S., Huang, Z., Wang, X., Fang, L., Li, S., Zhang, Yong & Zhang, G., 2021, In: Bioinformatics. 37, 7, p. 1021-1023 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Saccocirridae Czerniavsky, 1881

    Di Domenico, M., Worsaae, Katrine & Purschke, G., 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 280-298 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  34. Accepted/In press

    Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: An exploratory randomised placebo-controlled trial

    Kragsnaes, M. S., Kjeldsen, J., Horn, H. C., Munk, H. L., Pedersen, J. K., Just, S. A., Ahlquist, P., Pedersen, F. M., De Wit, M., Möller, S., Andersen, V., Kristiansen, Karsten, Kinggaard Holm, D., Holt, H. M., Christensen, R. & Ellingsen, T., 2021, (Accepted/In press) In: Annals of the Rheumatic Diseases. 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals

    Bozzi, D., Rasmussen, Jacob Agerbo, Carøe, Christian, Sveier, H., Nordøy, K., Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2021, In: BMC Animal Microbiome. 3, 17 p., 30.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Satellite-Observed Decreases in Water Turbidity in the Pearl River Estuary: Potential Linkage With Sea-Level Rise

    Wang, J., Tong, Y., Feng, L., Zhao, D., Zheng, C. & Tang, Jing, 2021, In: Journal of Geophysical Research: Oceans. 126, 4, 17 p., e2020JC016842.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Seasonal and elevational variability in the induction of specialized compounds from mountain birch (Betula pubescens var. pumila) by winter moth larvae (Operophtera brumata)

    Ryde, Ingvild, Li, Tao, Rieksta, J., Marques dos Santos, Bruna, Neilson, Elizabeth Heather Jakobsen, Gericke, O., Jepsen, J. U., Bork, L. R. H., Holm, H. S. & Rinnan, Riikka, 2021, In: Tree Physiology. 41, 6, p. 1019-1033

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Sedentaria incertae sedis: Diurodrilidae Kristensen & Niilonen, 1982

    Worsaae, Katrine & Kristensen, Reinhardt Møbjerg, 2021, Annelida: Pleistoannelida, Sedentaria III, Errantia I. Purschke, G., Böggemann, M. & Westheide, W. (eds.). De Gruyter, Vol. 3. p. 202-214 (Handbook of Zoology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  39. Published

    Shallow soils are warmer under trees and tall shrubs across Arctic and Boreal ecosystems

    Kropp, H., Loranty, M. M., Natali, S. M., Kholodov, A. L., Rocha, A. V., Myers-Smith, I., Abbot, B. W., Abermann, J., Blanc-Betes, E., Blok, D., Blume-Werry, G., Boike, J., Breen, A. L., Cahoon, S. M. P., Christiansen, C. T., Douglas, T. A., Epstein, H. E., Frost, G. V., Goeckede, M., Høye, T. T., Mamet, S. D., O'Donnell, J. A., Olefeldt, D., Phoenix, G. K., Salmon, V. G., Sannel, A. B. K., Smith, S. L., Sonnentag, O., Vaughn, L. S., Williams, M., Elberling, Bo, Gough, L., Hjort, J., Lafleur, P. M., Euskirchen, E. S., Heijmans, M. M. P. D., Humphreys, E. R., Iwata, H., Jones, B. M., Jorgenson, M. T., Grünberg, I., Kim, Y., Laundre, J., Mauritz, M., Michelsen, Anders, Schaepman-Strub, G., Tape, K. D., Ueyama, M., Lee, B., Langley, K. & Lund, M., 2021, In: Environmental Research Letters. 16, 1, 13 p., 015001.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Shuttle-box systems for studying preferred environmental ranges by aquatic animals

    Christensen, E. A. F., Andersen, L. E. J., Bergsson, H., Steffensen, John Fleng & Killen, S. S., 2021, In: Conservation Physiology. 9, 1, 21 p., coab028.

    Research output: Contribution to journalReviewResearchpeer-review

  41. Published

    Small Intestinal Tuft Cell Activity Associates With Energy Metabolism in Diet-Induced Obesity

    Arora, P., Andersen, D., Moll, J. M., Danneskiold-Samsøe, N. B., Xu, L., Zhou, B., Kladis, G., Rausch, Philipp, Workman, C. T., Kristiansen, Karsten & Brix, S., 2021, In: Frontiers in Immunology. 12, 13 p., 629391.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Software for reconstruction of nonuniformly sampled NMR data

    Pedersen, Christian Parsbæk, Prestel, A. & Teilum, Kaare, 2021, In: Magnetic Resonance in Chemistry. 59, 3, p. 315-323 9 p.

    Research output: Contribution to journalReviewResearchpeer-review

  43. Published

    Soil fungal diversity and functionality are driven by plant species used in phytoremediation

    Gil-Martínez, M., López-García, Á., Domínguez, M. T., Kjøller, Rasmus, Navarro-Fernández, C. M., Rosendahl, Søren & Marañón, T., 2021, In: Soil Biology and Biochemistry. 153, 12 p., 108102.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles

    Meisner, A., Snoek, B. L., Nesme, J., Dent, E., Jacquiod, S., Classen, A. T. & Priemé, Anders, 2021, In: The ISME Journal. 15, 4, p. 1207-1221 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Soil microorganisms decrease barley biomass uniformly across contrasting nitrogen availability

    Munkager, Victoria, Altenburger, A., Priemé, Anders, Bang-Andreasen, T., Rønn, Regin, Vestergård, M. & Ekelund, Flemming, 2021, In: European Journal of Soil Biology. 104, 9 p., 103311.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions

    Schauberger, C., Middelboe, Mathias, Larsen, M., Peoples, L. M., Bartlett, D. H., Kirpekar, F., Rowden, A. A., Wenzhöfer, F., Thamdrup, B. & Glud, R. N., 2021, In: Limnology and Oceanography. 66, 6, p. 2095-2109 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Specialized microbiomes facilitate natural rhizosphere microbiome interactions counteracting high salinity stress in plants

    Santos, S. S., Rask, K. A., Vestergård, M., Johansen, Jesper Liengaard, Priemé, Anders, Frøslev, Tobias Guldberg, González, A. M. M., He, H. & Ekelund, Flemming, 2021, In: Environmental and Experimental Botany. 186, 12 p., 104430.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Species interactions alter the selection of thermal environment in a coral reef fish

    Nay, T. J., Johansen, J. L., Rummer, J. L., Steffensen, John Fleng & Hoey, A. S., 2021, In: Oecologia. 196, 2, p. 363-371 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Species-specific but not phylosymbiotic gut microbiomes of New Guinean passerine birds are shaped by diet and flight-associated gut modifications

    Bodawatta, K. H., Koane, B., Maiah, G., Sam, K., Poulsen, Michael & Jønsson, Knud Andreas, 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1949, 10 p., 20210446.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Stand age, degree of encroachment and soil characteristics modulate changes of C and N cycles in dry grassland soils invaded by the N2-fixing shrub Amorpha fruticosa

    Pellegrini, Elisa, Boscutti, F., Alberti, G., Casolo, V., Contin, M. & De Nobili, M., 2021, In: Science of the Total Environment. 792, 10 p., 148295.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Status and perspectives of biomarker validation for diagnosis, stratification, and treatment

    Skov, J., Kristiansen, Karsten, Jespersen, J. & Olesen, P., 2021, In: Public Health. 190, p. 173-175 3 p.

    Research output: Contribution to journalLetterResearchpeer-review