Josefin Stiller

Josefin Stiller

Assistant Professor

Member of:


    1. 2023
    2. Published

      Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls

      Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.

      Research output: Contribution to journalJournal articlepeer-review

    3. Published

      ClockstaRX: testing molecular clock hypotheses with genomic data

      Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

      Research output: Working paperPreprintResearch

    4. Published

      Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea

      Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2002, 11 p., 20230988.

      Research output: Contribution to journalJournal articlepeer-review

    5. Published

      Evolution of the germline mutation rate across vertebrates

      Bergeron, Lucie Adrienne, Besenbacher, S., Zheng, J., Li, P., Bertelsen, Mads Frost, Quintard, B., Hoffman, J. I., Li, Z., Leger, J. S., Shao, C., Stiller, Josefin, Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2023, In: Nature. 615, p. 285-291

      Research output: Contribution to journalJournal articlepeer-review

    6. Published

      Molecular exploration of fossil eggshell uncovers hidden lineage of giant extinct bird

      Grealy, A., Miller, G. H., Phillips, M. J., Clarke, S. J., Fogel, M., Patalwala, D., Rigby, P., Hubbard, A., Demarchi, B., Collins, Matthew James, Mackie, Meaghan, Sakalauskaite, J., Stiller, Josefin, Clarke, J. A., Legendre, L. J., Douglass, K., Hansford, J., Haile, J. & Bunce, M., 2023, In: Nature Communications. 14, 14 p., 914.

      Research output: Contribution to journalJournal articlepeer-review

    7. Published

      Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture

      Stiller, Josefin, Wilson, N. G. & Rouse, G., 2023, In: BMC Biology. 21, 17 p., 129.

      Research output: Contribution to journalJournal articlepeer-review

    8. Published

      The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

      Mc Cartney, A. M., Formenti, G., Mouton, A., Panis, D. D., Marins, L. S., Leitão, H. G., Diedericks, G., Kirangwa, J., Morselli, M., Salces-Ortiz, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernández, R., Pooter, T. D., Joris, G., Strazisar, M., Wood, J., Herron, K. E. & 30 others, Seehausen, O., Watts, P. C., Shaw, F., Davey, R. P., Minotto, A., Fernández, J. M., Böhne, A., Alegria, C., Alioto, T., Alves, P. C., Amorim, I. R., Aury, J., Backstrom, N., Baldrian, P., Baltrunaite, L., Barta, E., Bed’Hom, B., Belser, C., Bergsten, J., Bertrand, L., Bilandžija, H., Binzer-Panchal, M., Bista, I., Blaxter, M., Borges, P. A., Dias, G. B., Bosse, M., Garg, S., Madsen, O. & Stiller, Josefin, 2023, 51 p. (bioRxiv).

      Research output: Working paperPreprintResearch

    9. Accepted/In press

      Whole-genomes from the extinct Xerces Blue butterfly can help identify declining insect species

      de-Dios, T., Fontsere, Claudia, Renom, P., Stiller, Josefin, Llovera, L., Uliano-Silva, M., Sánchez-Gracia, A., Wright, C., Lizano, E., Caballero, B., Navarro, A., Civit, S., Robbins, R. K., Blaxter, M., Marquès-Bonet, T., Vila, R. & Lalueza-Fox, C., 2023, (Accepted/In press) In: eLife. 19 p.

      Research output: Contribution to journalJournal articlepeer-review

    10. 2022
    11. Published

      Ancient proteins resolve controversy over the identity of Genyornis eggshell

      Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.

      Research output: Contribution to journalJournal articlepeer-review

    12. Published

      Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

      Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.

      Research output: Working paperPreprintResearch

    13. Published

      Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases

      Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.

      Research output: Contribution to journalJournal articlepeer-review

    14. Published

      Phylogenomic analyses of mud dragons (Kinorhyncha)

      Herranz, Maria, Stiller, Josefin, Worsaae, Katrine & Sørensen, Martin Vinther, 2022, In: Molecular Phylogenetics and Evolution. 168, 10 p., 107375.

      Research output: Contribution to journalJournal articlepeer-review

    15. Published

      Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates

      Stiller, Josefin, Short, G., Hamilton, H., Saarman, N., Longo, S., Wainwright, P., Rouse, G. W. & Simison, W. B., 2022, In: BMC Biology. 20, 1, 75.

      Research output: Contribution to journalJournal articlepeer-review

    16. Published

      Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)

      Tilic, E., Stiller, Josefin, Campos, E., Pleijel, F. & Rouse, G. W., 2022, In: Molecular Phylogenetics and Evolution. 166, 10 p., 107339.

      Research output: Contribution to journalJournal articlepeer-review

    17. 2021
    18. Published

      Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles

      Andreu-Sánchez, S., Chen, W., Stiller, Josefin & KU, thw266, 2021, In: GigaScience. 10, 1, 11 p., giaa161.

      Research output: Contribution to journalJournal articlepeer-review

    19. Published

      Using UCEs to track the influence of sea‐level change on leafy seadragon populations

      Stiller, Josefin, Rodrigues da Fonseca, Rute Andreia, Alfaro, M. E., Faircloth, B. C., Wilson, N. G. & Rouse, G. W., 2021, In: Molecular Ecology. p. 1364-1380

      Research output: Contribution to journalJournal articlepeer-review

    20. 2020
    21. Published

      An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species

      Zhang, P., Zhao, Y., Li, C., Lin, M., Dong, L., Zhang, R., Liu, M., Li, K., Zhang, H., Liu, X., Zhang, Y., Yuan, Y., Liu, H., Seim, I., Sun, S., Du, X., Chang, Y., Li, F., Liu, S., Lee, S. M. Y. & 13 others, Wang, K., Wang, D., Wang, X., McGowen, M. R., Jefferson, T. A., Olsen, Morten Tange, Stiller, Josefin, KU, thw266, Xu, X., Yang, H., Fan, G., Liu, X. & Li, S., 2020, In: iScience. 23, 10, 52 p., 101640.

      Research output: Contribution to journalJournal articlepeer-review

    22. Published

      Dense sampling of bird diversity increases power of comparative genomics

      Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., Pacheco, G. & 130 others, Sinding, Mikkel Holger Strander, Puetz, Lara Christine, Cavill, E., Ribeiro, Â. M., Eckhart, L., Fjeldså, Jon, Hosner, Peter Andrew, Brumfield, R. T., Christidis, L., Bertelsen, Mads Frost, Sicheritz-Pontén, Thomas, Tietze, D. T., Robertson, B. C., Song, G., Borgia, G., Claramunt, S., Lovette, I. J., Cowen, S. J., Njoroge, P., Dumbacher, J. P., Ryder, O. A., Fuchs, J., Bunce, M., Burt, D. W., Cracraft, J., Meng, G., Hackett, S. J., Ryan, P. G., Jønsson, Knud Andreas, Jamieson, I. G., Rodrigues da Fonseca, Rute Andreia, Braun, E. L., Houde, P., Mirarab, S., Suh, A., Hansson, B., Ponnikas, S., Sigeman, H., Stervander, M., Frandsen, P. B., van der Zwan, H., van der Sluis, R., Visser, C., Balakrishnan, C. N., Clark, A. G., Fitzpatrick, J. W., Bowman, R., Chen, N., Cloutier, A., Sackton, T. B., Edwards, S. V., Foote, D. J., Shakya, S. B., Sheldon, F. H., Vignal, A., Soares, A. E. R., Shapiro, B., González-Solís, J., Ferrer-Obiol, J., Rozas, J., Riutort, M., Tigano, A., Friesen, V., Dalén, L., Urrutia, A. O., Székely, T., Liu, Y., Campana, M. G., Corvelo, A., Fleischer, R. C., Rutherford, K. M., Gemmell, N. J., Dussex, N., Mouritsen, H., Thiele, N., Delmore, K., Liedvogel, M., Franke, A., Hoeppner, M. P., Krone, O., Fudickar, A. M., Milá, B., Ketterson, E. D., Fidler, A. E., Friis, G., Parody-Merino, Á. M., Battley, P. F., Cox, M. P., Lima, N. C. B., Prosdocimi, F., Parchman, T. L., Schlinger, B. A., Loiselle, B. A., Blake, J. G., Lim, H. C., Day, L. B., Fuxjager, M. J., Baldwin, M. W., Braun, M. J., Wirthlin, M., Dikow, R. B., Ryder, T. B., Camenisch, G., Keller, L. F., Dacosta, J. M., Hauber, M. E., Louder, M. I. M., Witt, C. C., McGuire, J. A., Mudge, J., Megna, L. C., Carling, M. D., Wang, B., Taylor, S. A., Del-Rio, G., Aleixo, A., Vasconcelos, A. T. R., Mello, C. V., Weir, J. T., Haussler, D., Li, Q., Yang, H., Wang, J., Lei, F., Rahbek, Carsten, Gilbert, M Thomas P, Graves, G. R., Jarvis, E. D., Paten, B. & KU, thw266, 2020, In: Nature. 587, 7833, p. 252-257

      Research output: Contribution to journalJournal articlepeer-review

    23. Published

      Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet

      Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., Stiller, J., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y. & 6 others, Dalén, L., Marquès-Bonet, T., KU, thw266, Antunes, A., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: Current Biology. 30, 1, p. 108-114, e1-e5

      Research output: Contribution to journalJournal articlepeer-review

    24. Published

      More is needed — Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)

      Tilic, E., Sayyari, E., Stiller, Josefin, Mirarab, S. & Rouse, G. W., 2020, In: Molecular Phylogenetics and Evolution. 9 p., 106892.

      Research output: Contribution to journalJournal articlepeer-review

    25. Published

      Progressive Cactus is a multiple-genome aligner for the thousand-genome era

      Armstrong, J., Hickey, G., Diekhans, M., Fiddes, I. T., Novak, A. M., Deran, A., Fang, Q., Xie, D., Feng, S., Stiller, J., Genereux, D., Johnson, J., Marinescu, V. D., Alföldi, J., Harris, R. S., Lindblad-Toh, K., Haussler, D., Karlsson, E., Jarvis, E. D., Zhang, G. & 1 others, Paten, B., 2020, In: Nature. 587, 7833, p. 246-251

      Research output: Contribution to journalJournal articlepeer-review

    26. Published

      Spaghetti to a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data

      Stiller, Josefin, Tilic, E., Rousset, V., Pleijel, F. & Rouse, G. W., 2020, In: Biology. 9, 4, 28 p., 73.

      Research output: Contribution to journalJournal articlepeer-review

    27. 2019
    28. Published

      Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies

      Stiller, Josefin & KU, thw266, 2019, In: Diversity. 11, 7, 19 p., 115.

      Research output: Contribution to journalJournal articlepeer-review

    29. 2017
    30. Between Hot Rocks and Dry Places: The Status of the Dixie Valley Toad

      Forrest, M. J., Stiller, Josefin, King, T. L. & Rouse, G. W., Jul 2017, In: Western North American Naturalist. 77, 2, p. 162-175

      Research output: Contribution to journalJournal articlepeer-review

    31. Barriers to gene flow in common seadragons (Syngnathidae: Phyllopteryx taeniolatus)

      Wilson, N. G., Stiller, Josefin & Rouse, G. W., 2017, In: Conservation Genetics. 18, 1, p. 53-66

      Research output: Contribution to journalJournal articlepeer-review

    32. Do ampharetids take sedimented steps between vents and seeps? Phylogeny and habitat-use of Ampharetidae (Annelida, Terebelliformia) in chemosynthesis-based ecosystems

      Eilertsen, M. H., Kongsrud, J. A., Alvestad, T., Stiller, Josefin, Rouse, G. W. & Rapp, H. T., 2017, In: BMC Evolutionary Biology. 17, 15 p., 222.

      Research output: Contribution to journalJournal articlepeer-review

    33. First live records of the ruby seadragon (Phyllopteryx dewysea, Syngnathidae)

      Rouse, G. W., Stiller, Josefin & Wilson, N. G., 2017, In: Marine Biodiversity Records. 10, 4 p., 2.

      Research output: Contribution to journalJournal articlepeer-review

    34. The Leafy Seadragon, Phycodurus eques, a Flagship Species with Low But Structured Genetic Variability

      Stiller, Josefin, Wilson, N. G., Donnellan, S. & Rouse, G. W., 2017, In: Journal of Heredity. 108, 2, p. 152-162

      Research output: Contribution to journalJournal articlepeer-review

    35. 2015
    36. A spectacular new species of seadragon (Syngnathidae)

      Stiller, Josefin, Wilson, N. G. & Rouse, G., 2015, In: Royal Society Open Science. 2, 2, 12 p., 140458.

      Research output: Contribution to journalJournal articlepeer-review

    37. 2013
    38. Phylogeny, biogeography and systematics of hydrothermal vent and methane seep Amphisamytha (Ampharetidae, Annelida), with descriptions of three new species

      Stiller, Josefin, Rousset, V., Pleijel, F., Chevaldonne, P., Vrijenhoek, R. C. & Rouse, G. W., 2013, In: Systematics and Biodiversity. 11, 1, p. 35-65

      Research output: Contribution to journalJournal articlepeer-review

    39. 2012
    40. Can insect egg deposition 'warn' a plant of future feeding damage by herbivorous larvae?

      Beyaert, I., Köpke, D., Stiller, Josefin, Hammerbacher, A., Yoneya, K., Schmidt, A., Gershenzon, J. & Hilker, M., 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1726, p. 101-108

      Research output: Contribution to journalJournal articlepeer-review

    ID: 184189534