Josefin Stiller
Assistant Professor
- 2024
- Published
A region of suppressed recombination misleads neoavian phylogenomics
Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complexity of avian evolution revealed by family-level genomes
Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, , 1 Apr 2024, In: Nature.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ClockstaRX: Testing molecular clock hypotheses with genomic data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 1 Mar 2024, In: Genome Biology and Evolution. p. evae064Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls
Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ClockstaRX: testing molecular clock hypotheses with genomic data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.Research output: Working paper › Preprint › Research
- Published
Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea
Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2002, 11 p., 20230988.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of the germline mutation rate across vertebrates
Bergeron, Lucie Adrienne, Besenbacher, S., Zheng, J., Li, P., Bertelsen, Mads Frost, Quintard, B., Hoffman, J. I., Li, Z., Leger, J. S., Shao, C., Stiller, Josefin, Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2023, In: Nature. 615, p. 285-291Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular exploration of fossil eggshell uncovers hidden lineage of giant extinct bird
Grealy, A., Miller, G. H., Phillips, M. J., Clarke, S. J., Fogel, M., Patalwala, D., Rigby, P., Hubbard, A., Demarchi, B., Collins, Matthew James, Mackie, Meaghan, Sakalauskaite, J., Stiller, Josefin, Clarke, J. A., Legendre, L. J., Douglass, K., Hansford, J., Haile, J. & Bunce, M., 2023, In: Nature Communications. 14, 14 p., 914.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture
Stiller, Josefin, Wilson, N. G. & Rouse, G., 2023, In: BMC Biology. 21, 17 p., 129.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Mc Cartney, A. M., Formenti, G., Mouton, A., Panis, D. D., Marins, L. S., Leitão, H. G., Diedericks, G., Kirangwa, J., Morselli, M., Salces-Ortiz, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernández, R., Pooter, T. D., Joris, G., Strazisar, M., Wood, J., Herron, K. E. & 30 others, , 2023, 51 p. (bioRxiv).Research output: Working paper › Preprint › Research
- Accepted/In press
Whole-genomes from the extinct Xerces Blue butterfly can help identify declining insect species
de-Dios, T., Fontsere, Claudia, Renom, P., Stiller, Josefin, Llovera, L., Uliano-Silva, M., Sánchez-Gracia, A., Wright, C., Lizano, E., Caballero, B., Navarro, A., Civit, S., Robbins, R. K., Blaxter, M., Marquès-Bonet, T., Vila, R. & Lalueza-Fox, C., 2023, (Accepted/In press) In: eLife. 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Ancient proteins resolve controversy over the identity of Genyornis eggshell
Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea
Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.Research output: Working paper › Preprint › Research
- Published
Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases
Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomic analyses of mud dragons (Kinorhyncha)
Herranz, Maria, Stiller, Josefin, Worsaae, Katrine & Sørensen, Martin Vinther, 2022, In: Molecular Phylogenetics and Evolution. 168, 10 p., 107375.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates
Stiller, Josefin, Short, G., Hamilton, H., Saarman, N., Longo, S., Wainwright, P., Rouse, G. W. & Simison, W. B., 2022, In: BMC Biology. 20, 1, 75.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)
Tilic, E., Stiller, Josefin, Campos, E., Pleijel, F. & Rouse, G. W., 2022, In: Molecular Phylogenetics and Evolution. 166, 10 p., 107339.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles
Andreu-Sánchez, S., Chen, W., Stiller, Josefin & KU, thw266, 2021, In: GigaScience. 10, 1, 11 p., giaa161.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using UCEs to track the influence of sea‐level change on leafy seadragon populations
Stiller, Josefin, Rodrigues da Fonseca, Rute Andreia, Alfaro, M. E., Faircloth, B. C., Wilson, N. G. & Rouse, G. W., 2021, In: Molecular Ecology. p. 1364-1380Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species
Zhang, P., Zhao, Y., Li, C., Lin, M., Dong, L., Zhang, R., Liu, M., Li, K., Zhang, H., Liu, X., Zhang, Y., Yuan, Y., Liu, H., Seim, I., Sun, S., Du, X., Chang, Y., Li, F., Liu, S., Lee, S. M. Y. & 13 others, , 2020, In: iScience. 23, 10, 52 p., 101640.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dense sampling of bird diversity increases power of comparative genomics
Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., Pacheco, G. & 130 others, , 2020, In: Nature. 587, 7833, p. 252-257Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet
Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., Stiller, J., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y. & 6 others, , 2020, In: Current Biology. 30, 1, p. 108-114, e1-e5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
More is needed — Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)
Tilic, E., Sayyari, E., Stiller, Josefin, Mirarab, S. & Rouse, G. W., 2020, In: Molecular Phylogenetics and Evolution. 9 p., 106892.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
Armstrong, J., Hickey, G., Diekhans, M., Fiddes, I. T., Novak, A. M., Deran, A., Fang, Q., Xie, D., Feng, S., Stiller, J., Genereux, D., Johnson, J., Marinescu, V. D., Alföldi, J., Harris, R. S., Lindblad-Toh, K., Haussler, D., Karlsson, E., Jarvis, E. D., Zhang, G. & 1 others, , 2020, In: Nature. 587, 7833, p. 246-251Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spaghetti to a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data
Stiller, Josefin, Tilic, E., Rousset, V., Pleijel, F. & Rouse, G. W., 2020, In: Biology. 9, 4, 28 p., 73.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 184189534
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Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet
Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies
Research output: Contribution to journal › Journal article › Research › peer-review
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Do ampharetids take sedimented steps between vents and seeps? Phylogeny and habitat-use of Ampharetidae (Annelida, Terebelliformia) in chemosynthesis-based ecosystems
Research output: Contribution to journal › Journal article › Research › peer-review