Josefin Stiller

Josefin Stiller

Assistant Professor

Member of:

    ORCID: 0000-0001-6009-9581

    Publication year:
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    1 - 34 out of 34Page size: 500
    1. 2024
    2. Published

      A region of suppressed recombination misleads neoavian phylogenomics

      Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Complexity of avian evolution revealed by family-level genomes

      Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, Zhou, C., Xie, Y., Huang, Z., Cao, Z., Yan, Z., Ogilvie, H. A., Nakhleh, L., Lindow, Bent Erik Kramer, Morel, B., Fjeldså, Jon, Hosner, Peter Andrew, da Fonseca, R. R., Petersen, Bent, Tobias, J. A., Székely, T., Kennedy, J. D., Reeve, A. H., Liker, A., Stervander, M., Antunes, A., Tietze, D. T., Bertelsen, Mads, Lei, F., Rahbek, Carsten, Graves, G. R., Schierup, M. H., Warnow, T., Braun, E. L., Gilbert, M Thomas P, Jarvis, E. D., Mirarab, S. & KU, thw266, 1 Apr 2024, In: Nature.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      ClockstaRX: Testing molecular clock hypotheses with genomic data

      Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 1 Mar 2024, In: Genome Biology and Evolution. p. evae064

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. 2023
    6. Published

      Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls

      Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      ClockstaRX: testing molecular clock hypotheses with genomic data

      Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

      Research output: Working paper › Preprint › Research

    8. Published

      Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea

      Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2002, 11 p., 20230988.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Evolution of the germline mutation rate across vertebrates

      Bergeron, Lucie Adrienne, Besenbacher, S., Zheng, J., Li, P., Bertelsen, Mads Frost, Quintard, B., Hoffman, J. I., Li, Z., Leger, J. S., Shao, C., Stiller, Josefin, Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2023, In: Nature. 615, p. 285-291

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Molecular exploration of fossil eggshell uncovers hidden lineage of giant extinct bird

      Grealy, A., Miller, G. H., Phillips, M. J., Clarke, S. J., Fogel, M., Patalwala, D., Rigby, P., Hubbard, A., Demarchi, B., Collins, Matthew James, Mackie, Meaghan, Sakalauskaite, J., Stiller, Josefin, Clarke, J. A., Legendre, L. J., Douglass, K., Hansford, J., Haile, J. & Bunce, M., 2023, In: Nature Communications. 14, 14 p., 914.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture

      Stiller, Josefin, Wilson, N. G. & Rouse, G., 2023, In: BMC Biology. 21, 17 p., 129.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

      Mc Cartney, A. M., Formenti, G., Mouton, A., Panis, D. D., Marins, L. S., Leitão, H. G., Diedericks, G., Kirangwa, J., Morselli, M., Salces-Ortiz, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernández, R., Pooter, T. D., Joris, G., Strazisar, M., Wood, J., Herron, K. E. & 30 others, Seehausen, O., Watts, P. C., Shaw, F., Davey, R. P., Minotto, A., Fernández, J. M., Böhne, A., Alegria, C., Alioto, T., Alves, P. C., Amorim, I. R., Aury, J., Backstrom, N., Baldrian, P., Baltrunaite, L., Barta, E., Bed’Hom, B., Belser, C., Bergsten, J., Bertrand, L., Bilandžija, H., Binzer-Panchal, M., Bista, I., Blaxter, M., Borges, P. A., Dias, G. B., Bosse, M., Garg, S., Madsen, O. & Stiller, Josefin, 2023, 51 p. (bioRxiv).

      Research output: Working paper › Preprint › Research

    13. Accepted/In press

      Whole-genomes from the extinct Xerces Blue butterfly can help identify declining insect species

      de-Dios, T., Fontsere, Claudia, Renom, P., Stiller, Josefin, Llovera, L., Uliano-Silva, M., Sánchez-Gracia, A., Wright, C., Lizano, E., Caballero, B., Navarro, A., Civit, S., Robbins, R. K., Blaxter, M., Marquès-Bonet, T., Vila, R. & Lalueza-Fox, C., 2023, (Accepted/In press) In: eLife. 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. 2022
    15. Published

      Ancient proteins resolve controversy over the identity of Genyornis eggshell

      Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

      Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.

      Research output: Working paper › Preprint › Research

    17. Published

      Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases

      Mohammadi, S., Özdemir, H. İ., Ozbek, P., Sumbul, F., Stiller, Josefin, Deng, Y., Crawford, A. J., Rowland, H., Storz, J., Andolfatto, P. & Dobler, S., 2022, In: Molecular Biology and Evolution. 39, 12, 13 p., msac258.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Phylogenomic analyses of mud dragons (Kinorhyncha)

      Herranz, Maria, Stiller, Josefin, Worsaae, Katrine & Sørensen, Martin Vinther, 2022, In: Molecular Phylogenetics and Evolution. 168, 10 p., 107375.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates

      Stiller, Josefin, Short, G., Hamilton, H., Saarman, N., Longo, S., Wainwright, P., Rouse, G. W. & Simison, W. B., 2022, In: BMC Biology. 20, 1, 75.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)

      Tilic, E., Stiller, Josefin, Campos, E., Pleijel, F. & Rouse, G. W., 2022, In: Molecular Phylogenetics and Evolution. 166, 10 p., 107339.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. 2021
    22. Published

      Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles

      Andreu-Sánchez, S., Chen, W., Stiller, Josefin & KU, thw266, 2021, In: GigaScience. 10, 1, 11 p., giaa161.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Using UCEs to track the influence of sea‐level change on leafy seadragon populations

      Stiller, Josefin, Rodrigues da Fonseca, Rute Andreia, Alfaro, M. E., Faircloth, B. C., Wilson, N. G. & Rouse, G. W., 2021, In: Molecular Ecology. p. 1364-1380

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. 2020
    25. Published

      An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species

      Zhang, P., Zhao, Y., Li, C., Lin, M., Dong, L., Zhang, R., Liu, M., Li, K., Zhang, H., Liu, X., Zhang, Y., Yuan, Y., Liu, H., Seim, I., Sun, S., Du, X., Chang, Y., Li, F., Liu, S., Lee, S. M. Y. & 13 others, Wang, K., Wang, D., Wang, X., McGowen, M. R., Jefferson, T. A., Olsen, Morten Tange, Stiller, Josefin, KU, thw266, Xu, X., Yang, H., Fan, G., Liu, X. & Li, S., 2020, In: iScience. 23, 10, 52 p., 101640.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Dense sampling of bird diversity increases power of comparative genomics

      Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., Pacheco, G. & 130 others, Sinding, Mikkel Holger Strander, Puetz, Lara Christine, Cavill, Emily Louisa, Ribeiro, Â. M., Eckhart, L., Fjeldså, Jon, Hosner, Peter Andrew, Brumfield, R. T., Christidis, L., Bertelsen, Mads Frost, Sicheritz-Pontén, Thomas, Tietze, D. T., Robertson, B. C., Song, G., Borgia, G., Claramunt, S., Lovette, I. J., Cowen, S. J., Njoroge, P., Dumbacher, J. P., Ryder, O. A., Fuchs, J., Bunce, M., Burt, D. W., Cracraft, J., Meng, G., Hackett, S. J., Ryan, P. G., Jønsson, Knud Andreas, Jamieson, I. G., Rodrigues da Fonseca, Rute Andreia, Braun, E. L., Houde, P., Mirarab, S., Suh, A., Hansson, B., Ponnikas, S., Sigeman, H., Stervander, M., Frandsen, P. B., van der Zwan, H., van der Sluis, R., Visser, C., Balakrishnan, C. N., Clark, A. G., Fitzpatrick, J. W., Bowman, R., Chen, N., Cloutier, A., Sackton, T. B., Edwards, S. V., Foote, D. J., Shakya, S. B., Sheldon, F. H., Vignal, A., Soares, A. E. R., Shapiro, B., González-Solís, J., Ferrer-Obiol, J., Rozas, J., Riutort, M., Tigano, A., Friesen, V., Dalén, L., Urrutia, A. O., Székely, T., Liu, Y., Campana, M. G., Corvelo, A., Fleischer, R. C., Rutherford, K. M., Gemmell, N. J., Dussex, N., Mouritsen, H., Thiele, N., Delmore, K., Liedvogel, M., Franke, A., Hoeppner, M. P., Krone, O., Fudickar, A. M., Milá, B., Ketterson, E. D., Fidler, A. E., Friis, G., Parody-Merino, Á. M., Battley, P. F., Cox, M. P., Lima, N. C. B., Prosdocimi, F., Parchman, T. L., Schlinger, B. A., Loiselle, B. A., Blake, J. G., Lim, H. C., Day, L. B., Fuxjager, M. J., Baldwin, M. W., Braun, M. J., Wirthlin, M., Dikow, R. B., Ryder, T. B., Camenisch, G., Keller, L. F., Dacosta, J. M., Hauber, M. E., Louder, M. I. M., Witt, C. C., McGuire, J. A., Mudge, J., Megna, L. C., Carling, M. D., Wang, B., Taylor, S. A., Del-Rio, G., Aleixo, A., Vasconcelos, A. T. R., Mello, C. V., Weir, J. T., Haussler, D., Li, Q., Yang, H., Wang, J., Lei, F., Rahbek, Carsten, Gilbert, M Thomas P, Graves, G. R., Jarvis, E. D., Paten, B. & KU, thw266, 2020, In: Nature. 587, 7833, p. 252-257

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet

      Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., Stiller, J., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y. & 6 others, Dalén, L., Marquès-Bonet, T., KU, thw266, Antunes, A., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: Current Biology. 30, 1, p. 108-114, e1-e5

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      More is needed — Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)

      Tilic, E., Sayyari, E., Stiller, Josefin, Mirarab, S. & Rouse, G. W., 2020, In: Molecular Phylogenetics and Evolution. 9 p., 106892.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Progressive Cactus is a multiple-genome aligner for the thousand-genome era

      Armstrong, J., Hickey, G., Diekhans, M., Fiddes, I. T., Novak, A. M., Deran, A., Fang, Q., Xie, D., Feng, S., Stiller, J., Genereux, D., Johnson, J., Marinescu, V. D., Alföldi, J., Harris, R. S., Lindblad-Toh, K., Haussler, D., Karlsson, E., Jarvis, E. D., Zhang, G. & 1 others, Paten, B., 2020, In: Nature. 587, 7833, p. 246-251

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      Spaghetti to a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data

      Stiller, Josefin, Tilic, E., Rousset, V., Pleijel, F. & Rouse, G. W., 2020, In: Biology. 9, 4, 28 p., 73.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. 2019
    32. Published

      Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies

      Stiller, Josefin & KU, thw266, 2019, In: Diversity. 11, 7, 19 p., 115.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. 2017

    34. Between Hot Rocks and Dry Places: The Status of the Dixie Valley Toad

      Forrest, M. J., Stiller, Josefin, King, T. L. & Rouse, G. W., Jul 2017, In: Western North American Naturalist. 77, 2, p. 162-175

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Barriers to gene flow in common seadragons (Syngnathidae: Phyllopteryx taeniolatus)

      Wilson, N. G., Stiller, Josefin & Rouse, G. W., 2017, In: Conservation Genetics. 18, 1, p. 53-66

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Do ampharetids take sedimented steps between vents and seeps? Phylogeny and habitat-use of Ampharetidae (Annelida, Terebelliformia) in chemosynthesis-based ecosystems

      Eilertsen, M. H., Kongsrud, J. A., Alvestad, T., Stiller, Josefin, Rouse, G. W. & Rapp, H. T., 2017, In: BMC Evolutionary Biology. 17, 15 p., 222.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. First live records of the ruby seadragon (Phyllopteryx dewysea, Syngnathidae)

      Rouse, G. W., Stiller, Josefin & Wilson, N. G., 2017, In: Marine Biodiversity Records. 10, 4 p., 2.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. The Leafy Seadragon, Phycodurus eques, a Flagship Species with Low But Structured Genetic Variability

      Stiller, Josefin, Wilson, N. G., Donnellan, S. & Rouse, G. W., 2017, In: Journal of Heredity. 108, 2, p. 152-162

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. 2015

    40. A spectacular new species of seadragon (Syngnathidae)

      Stiller, Josefin, Wilson, N. G. & Rouse, G., 2015, In: Royal Society Open Science. 2, 2, 12 p., 140458.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. 2013

    42. Phylogeny, biogeography and systematics of hydrothermal vent and methane seep Amphisamytha (Ampharetidae, Annelida), with descriptions of three new species

      Stiller, Josefin, Rousset, V., Pleijel, F., Chevaldonne, P., Vrijenhoek, R. C. & Rouse, G. W., 2013, In: Systematics and Biodiversity. 11, 1, p. 35-65

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. 2012

    44. Can insect egg deposition 'warn' a plant of future feeding damage by herbivorous larvae?

      Beyaert, I., Köpke, D., Stiller, Josefin, Hammerbacher, A., Yoneya, K., Schmidt, A., Gershenzon, J. & Hilker, M., 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1726, p. 101-108

      Research output: Contribution to journal › Journal article › Research › peer-review

    ID: 184189534