Robin Andersson

Robin Andersson

Associate Professor

ORCID: 0000-0003-1516-879X

Publication year:
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1 - 50 out of 73Page size: 50
  1. 2024
  2. E-pub ahead of print

    MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch

    Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, (E-pub ahead of print) In: Nature Genetics.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2023
  4. Published

    Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain

    Mei, T., Li, Yuan, Orduña Dolado, A., Li, Zhiquan, Andersson, Robin, Berliocchi, Laura & Rasmussen, Lene Juel, 2023, In: Frontiers in Aging Neuroscience. 15, 14 p., 1101216.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity

    Wenger, Alice, Biran, Alva Ada, Alcaraz, N., Riveiro, Alba, Sell, Annika Charlotte, Krautz, Robert, Flury, Valentin, Reveron-Gomez, Nazaret, Solis-Mezarino, V., Völker-Albert, M., Imhof, A., Andersson, Robin, Brickman, Joshua Mark & Groth, Anja, 2023, In: Nature Genetics. 55, 9, p. 1567-1578 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Marsico, A., Winther, Ole & Andersson, Robin, 2023, In: NAR Genomics and Bioinformatics. 5, 2, 10 p., 026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. 2022
  9. Published

    Current challenges in understanding the role of enhancers in disease

    Zaugg, J. B., Sahlén, P., Andersson, Robin, Alberich-Jorda, M., de Laat, W., Deplancke, B., Ferrer, J., Mandrup, S., Natoli, G., Plewczynski, D., Rada-Iglesias, A. & Spicuglia, S., 2022, In: Nature Structural and Molecular Biology. 29, 12, p. 1148-1158 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells

    Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Methods for fighting emerging pathogens

    Alcantara, L. C. J., Amenga-Etego, L., Andersson, Robin, Bhaumik, M., Choi, Y. K., Decaluwe, H., Geoghegan, J., Haagmans, B. L., López, S., Mukhtar, M. M., Nelwan, E., Rahal, E. A., Sato, K., Sklan, E. H. & Fang, Y. S. C., 2022, In: Nature Methods. 19, 4, p. 395-397 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  12. Published

    Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

    Einarsson, H., Salvatore, Marco, Vaagenso, C., Alcaraz, N., Lange, Jette Bornholdt, Rennie, Sarah & Andersson, Robin, 2022, In: eLife. 2022, 36 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2022, 30 p.

    Research output: Working paper › Preprint › Research

  14. Published

    Transfer learning reveals sequence determinants of regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Winther, Ole & Andersson, Robin, 2022, bioRxiv, 24 p.

    Research output: Working paper › Preprint › Research

  15. 2021
  16. Published

    Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

    Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, Aken, B. L., Alam, I., Alam, T., Alasiri, R., Alhendi, A. M. N., Alinejad-Rokny, H., Alvarez, M. J., Andersson, Robin, Arakawa, T., Araki, M., Arbel, T., Lange, Jette Bornholdt, Boyd, M., Chen, Y., Coskun, M., Dalby, M., Ienasescu, H., Jørgensen, M., Kaczkowski, B., Kere, J., Li, K., Lilje, B., Nepal, C., Nguyen, Q. H., Nielsen, L. K., Rennie, Sarah, Sandelin, Albin Gustav, Valen, E., Vitezic, M., Vitting-Seerup, K. & FANTOM Consortium, F. C., 2021, In: Nature Communications. 12, 18 p., 3297.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq

    Petryk, N., Reveron-Gomez, Nazaret, González-Aguilera, C., Dalby, M., Andersson, Robin & Groth, Anja, 2021, In: Nature Protocols. 16, p. 4446-4493

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

    Arribas Hernandez, Laura, Rennie, Sarah, Köster, T., Porcelli, C., Lewinski, M., Staiger, D., Andersson, Robin & Brodersen, Peter, 2021, In: eLife. 10, 33 p., e72375.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation

    Arribas Hernandez, Laura, Rennie, Sarah, Schon, M., Porcelli, C., Enugutti, B., Andersson, Robin, Nodine, M. D. & Brodersen, Peter, 2021, In: eLife. 10, 27 p., e72377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    hyperTRIBER: a flexible R package for the analysis of differential RNA editing

    Rennie, Sarah, Magnusson, D. H. & Andersson, Robin, 2021, 12 p.

    Research output: Working paper › Preprint › Research

  21. 2020
  22. Published

    Comparative transcriptomics of primary cells in vertebrates

    Alam, T., Agrawal, S., Severin, J., Young, R. S., Andersson, R., Arner, E., Hasegawa, A., Lizio, M., Ramilowski, J. A., Abugessaisa, I., Ishizu, Y., Noma, S., Tarui, H., Taylor, M. S., Lassmann, T., Itoh, M., Kasukawa, T., Kawaji, H., Marchionni, L., Sheng, G. & 5 others, Forrest, A. R. R., Khachigian, L. M., Hayashizaki, Y., Carninci, P. & de Hoon, M. J. L., 2020, In: Genome Research. 30, 7, p. 951-961 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Determinants of enhancer and promoter activities of regulatory elements

    Andersson, Robin & Sandelin, Albin Gustav, 2020, In: Nature Reviews Genetics. 21, 2, p. 71-87 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1

    Gazova, I., Lefevre, L., Bush, S. J., Clohisey, S., Arner, E., de Hoon, M., Severin, J., van Duin, Lucas, Andersson, Robin, Lengeling, A., Hume, D. A. & Summers, K. M., 2020, In: Frontiers in Cell and Developmental Biology. 8, 21 p., 498.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. 2019
  26. Published

    CAGEfightR: analysis of 5'-end data using R/Bioconductor

    Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, 2019, In: BMC Bioinformatics. 20, 13 p., 487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells

    Agrawal-Singh, S., Lerdrup, Mads, Gomes, A. R., van de Werken, H. J. G., Johansen, Jens Vilstrup, Andersson, Robin, Sandelin, Albin Gustav, Helin, K. & Hansen, K., 2019, In: eLife. 8, p. 1-32 32 p., e40364.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2018
  29. Published

    CAGEfightR: Cap Analysis of Gene Expression (CAGE) in R/Bioconductor

    Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, Apr 2018

    Research output: Other contribution › Research

  30. Published

    Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies

    Boyd, M., Thodberg, M., Vitezic, M., Lange, J. B., Vitting-Seerup, K., Chen, Y., Coskun, M., Li, Y., Lo, B. Z. S., Klausen, P., Schweiger, P., Pedersen, A. G., Rapin, N. P. J-P., Skovgaard, K., Dahlgaard, K., Andersson, R., Terkelsen, T. B., Lilje, B., Troelsen, J. T., Petersen, A. M. & 7 others, Jensen, Kim Bak, Gögenur, Ismail, Thielsen, P., Seidelin, Jakob Benedict, Nielsen, Ole Haagen, Bjerrum, Jakob Tveiten & Sandelin, Albin Gustav, 2018, In: Nature Communications. 9, 19 p., 1661.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes

    Grarup, Niels, Moltke, Ida, Lepola, Mette Andersen, Dalby, M., Vitting-Seerup, K., Kern, T. S., Mahendran, Y., Jørsboe, E., Larsen, C. V. L., Dahl-Petersen, I. K., Gilly, A., Suveges, D., Dedoussis, G., Zeggini, E., Pedersen, Oluf Borbye, Andersson, Robin, Bjerregaard, P., Jørgensen, M. E., Albrechtsen, Anders & Hansen, Torben, 2018, In: Nature Genetics. 50, 2, p. 172-174 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    MCM2 promotes symmetric inheritance of modified histones during DNA replication

    Petryk, N., Dalby, M., Wenger, Alice, Stromme, C. B., Strandsby, A., Andersson, Robin & Groth, Anja, 2018, In: Science. 361, 6409, p. 1389-1392 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

    Baillie, J. K., Bretherick, A., Haley, C. S., Clohisey, S., Gray, A., Neyton, L. P. A., Barrett, J., Stahl, E. A., Tenesa, A., Andersson, R., Brown, J. B., Faulkner, G. J., Lizio, M., Schaefer, U., Daub, C., Itoh, M., Kondo, N., Lassmann, T., Kawai, J., Mole, D. & 14 others, Bajic, V. B., Heutink, P., Rehli, M., Kawaji, H., Sandelin, Albin Gustav, Suzuki, H., Satsangi, J., Wells, C. A., Hacohen, N., Freeman, T. C., Hayashizaki, Y., Carninci, P., Forrest, A. R. R. & Hume, D. A., 2018, In: PLoS Computational Biology. 14, 3, 24 p., e1005934.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription

    Jefimov, K., Alcaraz, N., Kloet, S. L., Värv, S., Sakya, S. A., Vaagenso, C., Vermeulen, M., Aasland, R. & Andersson, Robin, 2018, 31 p.

    Research output: Working paper › Preprint › Research

  35. Published

    The RNA exosome contributes to gene expression regulation during stem cell differentiation

    Llinares, M. L., Karadoulama, Evdoxia, Chen, Y., Wojenski, L. A., Villafano, G. J., Lange, Jette Bornholdt, Andersson, Robin, Core, L., Sandelin, Albin Gustav & Jensen, T. H., 2018, In: Nucleic Acids Research. 46, 21, p. 11502-11513

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

    Rennie, Sarah, Dalby, M., Lloret-Llinares, M., Bakoulis, Stylianos, Dalager Vaagensø, C., Jensen, T. H. & Andersson, Robin, 2018, In: Nucleic Acids Research. 46, 11, p. 5455-5469 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

    Rennie, Sarah, Dalby, M., van Duin, Lucas & Andersson, Robin, 2018, In: Nature Communications. 9, 16 p., 487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. 2017
  39. Published

    Identification of gene transcription start sites and enhancers responding to pulmonary carbon nanotube exposure in Vivo

    Lange, Jette Bornholdt, Saber, A. T., Lilje, B., Boyd, M., Jørgensen, M., Chen, Y., Vitezic, M., Jacobsen, N. R., Poulsen, S. S., Berthing, T., Bressendorff, Simon, Vitting-Seerup, K., Andersson, Robin, Hougaard, K. S., Yauk, C. L., Halappanavar, S., Wallin, E. H. R., Vogel, U. & Sandelin, Albin Gustav, 2017, In: A C S Nano. 11, 4, p. 3597-3613 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Transcriptional dynamics during human adipogenesis and its link to adipose morphology and distribution

    Ehrlund, A., Mejhert, N., Björk, C., Andersson, Robin, Kulyté, A., Åström, G., Itoh, M., Kawaji, H., Lassmann, T., Daub, C. O., Carninci, P., Forrest, A. R. R., Hayashizaki, Y., Sandelin, Albin Gustav, Ingelsson, E., FANTOM Consortium, Rydén, M., Laurencikiene, J., Arner, P. & Arner, E., 2017, In: Diabetes. 66, 1, p. 218-230 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

    Lizio, M., Harshbarger, J., Abugessaisa, I., Noguchi, S., Kondo, A., Severin, J., Mungall, C., Arenillas, D., Mathelier, A., Medvedeva, Y. A., Lennartsson, A., Drabløs, F., Ramilowski, J. A., Rackham, O., Gough, J., Andersson, R., Sandelin, A. G., Ienasescu, H-I., Ono, H., Bono, H. & 5 others, Hayashizaki, Y., Carninci, P., Forrest, A. R. R., Kasukawa, T. & Kawaji, H., 2017, In: Nucleic Acids Research. 45, D1, p. D737-D743 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. 2016
  43. Published

    On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

    Ienasescu, H., Li, K., Andersson, Robin, Vitezic, M., Rennie, Sarah, Chen, Y., Vitting-Seerup, K., Lagoni, E., Boyd, M., Lange, Jette Bornholdt, de Hoon, M. J. L., Kawaji, H., Lassmann, T., FANTOM Consortium, F. C., Hayashizaki, Y., Forrest, A. R. R., Carninci, P. & Sandelin, Albin Gustav, 2016, In: Database: The Journal of Biological Databases and Curation. 2016, 0, 10 p., baw144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters

    Chen, Y., Pai, A. A., Herudek, J., Lubas, M., Meola, N., Järvelin, A. I., Andersson, Robin, Pelechano, V., Steinmetz, L. M., Jensen, T. H. & Sandelin, Albin Gustav, 2016, In: Nature Genetics. 48, 9, p. 984-994 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Regulating retrotransposon activity through the use of alternative transcription start sites

    Persson, J., Steglich, B., Smialowska, A., Boyd, M., Lange, Jette Bornholdt, Andersson, Robin, Schurra, C., Arcangioli, B., Sandelin, Albin Gustav, Nielsen, Olaf & Ekwall, K., 2016, In: E M B O Reports. 17, 5, p. 753-768 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Transcriptome analysis of recurrently deregulated genes across multiple cancers identifies new pan-cancer biomarkers

    Kaczkowski, B., Tanaka, Y., Kawaji, H., Sandelin, Albin Gustav, Andersson, Robin, Itoh, M., Lassmann, T., the FANTOM5 consortium, Hayashizaki, Y., Carninci, P. & Forrest, A. R. R., 2016, In: Cancer Research. 76, 2, p. 216-226

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. 2015
  48. Published

    A unified architecture of transcriptional regulatory elements

    Andersson, Robin, Sandelin, Albin Gustav & Danko, C. G., Aug 2015, In: Trends in Genetics. 31, 8, p. 426-433 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Human gene promoters are intrinsically bidirectional

    Andersson, Robin, Chen, Y., Core, L., Lis, J. T., Sandelin, Albin Gustav & Jensen, T. H., 2015, In: Molecular Cell. 60, 3, p. 346-347 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  50. Published

    Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model

    Andersson, Robin, 2015, In: BioEssays. 37, 3, p. 314-323 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors

    Lennartsson, A., Arner, E., Fagiolini, M., Saxena, A., Andersson, Robin, Takahashi, H., Noro, Y., Sng, J., Sandelin, Albin Gustav, Hensch, T. K. & Carninci, P., 2015, In: Epigenetics & Chromatin. 8, 15 p., 55.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome

    Hurst, L. D., Ghanbarian, A. T., Forrest, A. R. R., Huminiecki, L., Rehli, M., Kenneth Baillie, J., de Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jørgensen, M., Dimont, E., Arner, E. & 243 others, Schmidl, C., Schaefer, U., Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Alam, I., Albanese, D., Altschuler, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Baker, S., Balwierz, P. J., Beckhouse, A. G., Pradhan, S. B., Blake, J. A., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Maxwell Burroughs, A., Califano, A., Cannistraci, C. V., Carbajo, D., Chen, Y., Chierici, M., Ciani, Y., Clevers, H. C., Dalla, E., Davis, C. A., Detmar, M., Diehl, A. D., Dohi, T., Drabløs, F., Edge, A. S. B., Edinger, M., Ekwall, K., Endoh, M., Enomoto, H., Fagiolini, M., Fairbairn, L., Fang, H., Farach-Carson, M. C., Faulkner, G. J., Favorov, A. V., Fisher, M. E., Frith, M. C., Fujita, R., Fukuda, S., Furlanello, C., Furuno, M., Furusawa, J. I., Geijtenbeek, T. B., Gibson, A., Gingeras, T., Goldowitz, D., Gough, J., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Harbers, M., Harshbarger, J., Hasegawa, A., Hasegawa, Y., Hashimoto, T., Herlyn, M., Hitchens, K. J., Ho Sui, S. J., Hofmann, O. M., Hoof, I., Hori, F., Huminiecki, L., Iida, K., Ikawa, T., Jankovic, B. R., Jia, H., Joshi, A., Jurman, G., Kaczkowski, B., Kai, C., Kaida, K., Kaiho, A., Kajiyama, K., Kanamori, M. K., Kasianov, A. S., Kasukawa, T., Katayama, S., Kato, S., Kawaguchi, S., Kawamoto, H., Kawamura, Y. I., Kawashima, T., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Peter Klinken, S., Knox, A. J., Kojima, M., Kojima, S., Kondo, N., Koseki, H., Koyasu, S., Krampitz, S., Kubosaki, A., Kwon, A. T., Laros, J. F. J., Lee, W., Lennartsson, A., Li, K., Lilje, B., Lipovich, L., Mackay, A. S., Manabe, R., Mar, J. C., Marchand, B., Mathelier, A., Mejhert, N., Meynert, A., Mizuno, Y., de Lima Morais, D. A., Morikawa, H., Morimoto, M., Moro, K., Motakis, E., Motohashi, H., Mummery, C. L., Murata, M., Nagao, S. S., Nakachi, Y., Nakahara, F., Nakamura, T., Nakamura, Y., Nakazato, K., van Nimwegen, E., Ninomiya, N., Nishiyori, H., Noma, S., Nozaki, T., Ogishima, S., Ohkura, N., Ohmiya, H., Ohno, H., Ohshima, M., Okada, M. H., Okazaki, Y., Orlando, V., Ovchinnikov, D. A., Pain, A., Passier, R., Patrikakis, M., Persson, H., Piazza, S., Prendergast, J. G. D., Rackham, O. J. L., Ramilowski, J. A., Rashid, M., Ravasi, T., Rizzu, P., Roncador, M., Roy, S., Rye, M. B., Saijyo, E., Sajantila, A., Saka, A., Sakaguchi, S., Sakai, M., Sato, H., Satoh, H., Savvi, S., Saxena, A., Schneider, C., Schultes, E. A., Schulze-Tanzil, G. G., Schwegmann, A., Sengstag, T., Sheng, G., Shimoji, H., Shimoni, Y., Shin, J. W., Simon, C., Sugiyama, D., Sugiyama, T., Suzuki, M., Suzuki, N., Swoboda, R. K., 't Hoen, P. A. C., Tagami, M., Takahashi, N., Takai, J., Tanaka, H., Tatsukawa, H., Tatum, Z., Thompson, M., Toyoda, H., Toyoda, T., Valen, E., van de Wetering, M., van den Berg, L. M., Verardo, R., Vijayan, D., Vorontsov, I. E., Wasserman, W. W., Watanabe, S., Wells, C. A., Winteringham, L. N., Wolvetang, E., Wood, E. J., Yamaguchi, Y., Yamamoto, M., Yoneda, M., Yonekura, Y., Yoshida, S., Zabierowski, S. E., Zhang, P. G., Zhao, X., Zucchelli, S., Summers, K. M., Suzuki, H., Daub, C. O., Kawai, J., Heutink, P., Hide, W., Freeman, T. C., Lenhard, B., Bajic, V. B., Taylor, M. S., Makeev, V. J., Sandelin, Albin Gustav, Hume, D. A., Carninci, P. & Hayashizaki, Y., 2015, In: PLoS Biology. 13, 12, 48 p., e1002315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    The frequent evolutionary birth and death of functional promoters in mouse and human

    Young, R. S., Hayashizaki, Y., Andersson, Robin, Sandelin, Albin Gustav, Kawaji, H., Itoh, M., Lassmann, T., Carninci, P., Bickmore, W. A., Forrest, A. R. & Taylor, M. S., 2015, In: Genome Research. 25, p. 1546-1557 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

    Arner, E., Daub, C. O., Vitting-Seerup, K., Andersson, R., Lilje, B., Drabløs, F., Lennartsson, A., Rönnerblad, M., Hrydziuszko, O., Vitezic, M., Freeman, T. C., Alhendi, A. M. N., Arner, P., Axton, R., Baillie, J. K., Beckhouse, A., Bodega, B., Briggs, J., Brombacher, F., Davis, M. & 89 others, Detmar, M., Ehrlund, A., Endoh, M., Eslami, A., Fagiolini, M., Fairbairn, L., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L., Goldowitz, D., Guler, R., Ha, T., Hara, M., Herlyn, M., Ikawa, T., Kai, C., Kawamoto, H., Khachigian, L. M., Klinken, S. P., Kojima, S., Koseki, H., Klein, S., Mejhert, N., Miyaguchi, K., Mizuno, Y., Morimoto, M., Morris, K. J., Mummery, C., Nakachi, Y., Ogishima, S., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D., Passier, R., Patrikakis, M., Pombo, A., Qin, X., Roy, S., Sato, H., Savvi, S., Saxena, A., Schwegmann, A., Sugiyama, D., Swoboda, R., Tanaka, H., Tomoiu, A., Winteringham, L. N., Wolvetang, E., Yanagi-Mizuochi, C., Yoneda, M., Zabierowski, S., Zhang, P., Abugessaisa, I., Bertin, N., Diehl, A. D., Fukuda, S., Furuno, M., Harshbarger, J., Hasegawa, A., Hori, F., Ishikawa-Kato, S., Ishizu, Y., Itoh, M., Kawashima, T., Kojima, M., Kondo, N., Lizio, M., Meehan, T. F., Mungall, C. J., Murata, M., Nishiyori-Sueki, H., Sahin, S., Nagao-Sato, S., Severin, J., de Hoon, M. J. L., Kawai, J., Kasukawa, T., Lassmann, T., Suzuki, H., Kawaji, H., Summers, K. M., Wells, C., Hume, D. A., Forrest, A. R. R., Sandelin, Albin Gustav, Carninci, P. & Hayashizaki, Y., 2015, In: Science (New York, N.Y.). 347, 6225, p. 1010-1014 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. 2014
  56. Published

    A promoter-level mammalian expression atlas

    Forest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., De Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jørgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U. & 241 others, Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Altschuler, I. A., Albanese, D., Altschule, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Rennie, S., Balwierz, P. J., Beckhouse, A. G., Pradhan-Bhatt, S., Blake, J. A., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Burroughs, A. M., Califano, A., Cannistraci, C. V., Carbajo, D., Chen, Y., Chierici, M., Ciani, Y., Clevers, H. C., Dalla, E., Davis, C. A., Detmar, M., Diehl, A. D., Dohi, T., Drabløs, F., Edge, A. S. B., Edinger, M., Ekwall, K., Endoh, M., Enomoto, H., Fagiolini, M., Fairbairn, L., Fang, H., Farach-Carson, M. C., Faulkner, G. J., Favorov, A. V., Fisher, M. E., Frith, M. C., Fujita, R., Fukuda, S., Furlanello, C., Furuno, M., Furusawa, J. I., Geijtenbeek, T. B., Gibson, A. P., Gingeras, T., Goldowitz, D., Gough, J., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Harbers, M., Harshbarger, J., Hasegawa, A., Hasegawa, Y., Hashimoto, T., Herlyn, M., Hitchens, K. J., Sui, S. J. H., Hofmann, O. M., Hoof, I., Hori, F., Huminiecki, L., Iida, K., Ikawa, T., Jankovic, B. R., Jia, H., Joshi, A., Jurman, G., Kaczkowski, B., Kai, C., Kaida, K., Kaiho, A., Kajiyama, K., Kanamori-Katayama, M., Kasianov, A. S., Kasukawa, T., Katayama, S., Kato, S., Kawaguchi, S., Kawamoto, H., Kawamura, Y. I., Kawashima, T., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Klinken, S. P., Knox, A. J., Kojima, M., Kojima, S., Kondo, N., Koseki, H., Koyasu, S., Krampitz, S., Kubosaki, A., Kwon, A. T., Laros, J. F. J., Lee, W., Lennartsson, A., Li, K., Lilje, B., Lipovich, L., Mackay-sim, A., Manabe, R. I., Mar, J. C., Marchand, B., Mathelier, A., Mejhert, N., Meynert, A., Mizuno, Y., De Morais, D. A. L., Morikawa, H., Morimoto, M., Moro, K., Motakis, E., Motohashi, H., Mummery, C. L., Murata, M., Nagao-Sato, S., Nakachi, Y., Nakahara, F., Nakamura, T., Nakamura, Y., Nakazato, K., Van Nimwegen, E., Ninomiya, N., Nishiyori, H., Noma, S., Nozaki, T., Ogishima, S., Ohkura, N., Ohmiya, H., Ohno, H., Ohshima, M., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D. A., Pain, A., Passier, R., Patrikakis, M., Persson, H., Piazza, S., Prendergast, J. G. D., Rackham, O. J. L., Ramilowski, J. A., Rashid, M., Ravasi, T., Rizzu, P., Roncador, M., Roy, S., Rye, M. B., Saijyo, E., Sajantila, A., Saka, A., Sakaguchi, S., Sakai, M., Sato, H., Satoh, H., Savvi, S., Saxena, A., Schneider, C., Schultes, E. A., Schulze-Tanzil, G. G., Schwegmann, A., Sengstag, T., Sheng, G., Shimoji, H., Shimoni, Y., Shin, J. W., Simon, C., Sugiyama, D., Sugiyama, T., Suzuki, M., Suzuki, N., Swoboda, R. K., 'T Hoen, P. A. C., Tagami, M., Tagami, N. T., Takai, J., Tanaka, H., Tatsukawa, H., Tatum, Z., Thompson, M., Toyoda, H., Toyoda, T., Valen, E., Van De Wetering, M., Van Den Berg, L. M., Verardo, R., Vijayan, D., Vorontsov, I. E., Wasserman, W. W., Watanabe, S., Wells, C. A., Winteringham, L. N., Wolvetang, E., Wood, E. J., Yamaguchi, Y., Yamamoto, M., Yoneda, M., Yonekura, Y., Yoshida, S., Zabierowski, S. E., Zhang, P. G., Zhao, X., Zucchelli, S., Summers, K. M., Suzuki, H., Daub, C. O., Kawai, J., Heutink, P., Hide, W., Freeman, T. C., Lenhard, B., Bajic, L. V. B., Taylor, M. S., Makeev, V. J., Sandelin, Albin Gustav, Hume, D. A., Carninci, P. & Hayashizaki, Y., 2014, In: Nature. 507, 7493, p. 462-470 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    An atlas of active enhancers across human cell types and tissues

    Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Lange, J. B., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 30 others, Jørgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., Mueller, F., Forrest, A. R. R., Carninci, P., Rehli, M. & Sandelin, Albin Gustav, 2014, In: Nature. 507, 7493, p. 455-461 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Analysis of the DNA methylome and transcriptome in granulopoiesis reveal timed changes and dynamic enhancer methylation

    Rönnerblad, M., Andersson, Robin, Olofsson, T., Douagi, I., Karimi, M., Lehmann, S., Hoof, I., de Hoon, M., Itoh, M., Nagao-Sato, S., Kawaji, H., Lassmann, T., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Sandelin, Albin Gustav, Ekwall, K., Arner, E. & Lennartsson, A., 2014, In: Blood. 123, 17

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    CAGE-defined promoter regions of the genes implicated in Rett Syndrome

    Vitezic, M., Bertin, N., Andersson, Robin, Lipovich, L., Kawaji, H., Lassmann, T., Sandelin, Albin Gustav, Heutink, P., Goldowitz, D., Ha, T., Zhang, P., Patrizi, A., Fagiolini, M., Forrest, A. R., Carninci, P. & Saxena, A., 2014, In: BMC Genomics. 15, 16 p., 1177.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

    Fort, A., Hashimoto, K., Yamada, D., Salimullah, M., Keya, C. A., Saxena, A., Bonetti, A., Voineagu, I., Bertin, N., Kratz, A., Noro, Y., Wong, C-H., de Hoon, M., Andersson, R., Sandelin, A. G., Suzuki, H., Wei, C-L., Koseki, H., Hasegawa, Y., Forrest, A. R. R. & 2 others, Carninci, P. & FANTOM Consortium, F. C., 2014, In: Nature Genetics. 46, 6, p. 558-566 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

    Pedersen, J. S., Valen, E., Velazquez, A. M. V., Parker, B. J., Rasmussen, M., Lindgreen, S., Lilje, B., Tobin, D. J., Kelly, T. K., Vang, S., Andersson, R., Jones, P. A., Hoover, C. A., Tikhonov, A., Prokhortchouk, E., Rubin, E. M., Sandelin, A. G., Gilbert, M. T. P., Krogh, A., Willerslev, E. & 1 others, Orlando, L. A. A., 2014, In: Genome Research. 24, 3, p. 454-466 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 32384007