3did: a catalog of domain-based interactions of known three-dimensional structure

Research output: Contribution to journalJournal articlepeer-review

Standard

3did : a catalog of domain-based interactions of known three-dimensional structure. / Mosca, Roberto; Céol, Arnaud; Stein, Amelie; Olivella, Roger; Aloy, Patrick.

In: Nucleic Acids Research, Vol. 42, No. D1, 2014, p. D374-D379.

Research output: Contribution to journalJournal articlepeer-review

Harvard

Mosca, R, Céol, A, Stein, A, Olivella, R & Aloy, P 2014, '3did: a catalog of domain-based interactions of known three-dimensional structure', Nucleic Acids Research, vol. 42, no. D1, pp. D374-D379. https://doi.org/10.1093/nar/gkt887

APA

Mosca, R., Céol, A., Stein, A., Olivella, R., & Aloy, P. (2014). 3did: a catalog of domain-based interactions of known three-dimensional structure. Nucleic Acids Research, 42(D1), D374-D379. https://doi.org/10.1093/nar/gkt887

Vancouver

Mosca R, Céol A, Stein A, Olivella R, Aloy P. 3did: a catalog of domain-based interactions of known three-dimensional structure. Nucleic Acids Research. 2014;42(D1):D374-D379. https://doi.org/10.1093/nar/gkt887

Author

Mosca, Roberto ; Céol, Arnaud ; Stein, Amelie ; Olivella, Roger ; Aloy, Patrick. / 3did : a catalog of domain-based interactions of known three-dimensional structure. In: Nucleic Acids Research. 2014 ; Vol. 42, No. D1. pp. D374-D379.

Bibtex

@article{27865eb7ac1348fc9e596c7dd1377d20,
title = "3did: a catalog of domain-based interactions of known three-dimensional structure",
abstract = "The database of 3D interacting domains (3did, available online for browsing and bulk download at http://3did.irbbarcelona.org) is a catalog of protein-protein interactions for which a high-resolution 3D structure is known. 3did collects and classifies all structural templates of domain-domain interactions in the Protein Data Bank, providing molecular details for such interactions. The current version also includes a pipeline for the discovery and annotation of novel domain-motif interactions. For every interaction, 3did identifies and groups different binding modes by clustering similar interfaces into 'interaction topologies'. By maintaining a constantly updated collection of domain-based structural interaction templates, 3did is a reference source of information for the structural characterization of protein interaction networks. 3did is updated every 6 months. ",
keywords = "Databases, Protein, Internet, Models, Molecular, Protein Interaction Domains and Motifs, Protein Interaction Mapping, Protein Interaction Maps",
author = "Roberto Mosca and Arnaud C{\'e}ol and Amelie Stein and Roger Olivella and Patrick Aloy",
year = "2014",
doi = "10.1093/nar/gkt887",
language = "English",
volume = "42",
pages = "D374--D379",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "D1",

}

RIS

TY - JOUR

T1 - 3did

T2 - a catalog of domain-based interactions of known three-dimensional structure

AU - Mosca, Roberto

AU - Céol, Arnaud

AU - Stein, Amelie

AU - Olivella, Roger

AU - Aloy, Patrick

PY - 2014

Y1 - 2014

N2 - The database of 3D interacting domains (3did, available online for browsing and bulk download at http://3did.irbbarcelona.org) is a catalog of protein-protein interactions for which a high-resolution 3D structure is known. 3did collects and classifies all structural templates of domain-domain interactions in the Protein Data Bank, providing molecular details for such interactions. The current version also includes a pipeline for the discovery and annotation of novel domain-motif interactions. For every interaction, 3did identifies and groups different binding modes by clustering similar interfaces into 'interaction topologies'. By maintaining a constantly updated collection of domain-based structural interaction templates, 3did is a reference source of information for the structural characterization of protein interaction networks. 3did is updated every 6 months.

AB - The database of 3D interacting domains (3did, available online for browsing and bulk download at http://3did.irbbarcelona.org) is a catalog of protein-protein interactions for which a high-resolution 3D structure is known. 3did collects and classifies all structural templates of domain-domain interactions in the Protein Data Bank, providing molecular details for such interactions. The current version also includes a pipeline for the discovery and annotation of novel domain-motif interactions. For every interaction, 3did identifies and groups different binding modes by clustering similar interfaces into 'interaction topologies'. By maintaining a constantly updated collection of domain-based structural interaction templates, 3did is a reference source of information for the structural characterization of protein interaction networks. 3did is updated every 6 months.

KW - Databases, Protein

KW - Internet

KW - Models, Molecular

KW - Protein Interaction Domains and Motifs

KW - Protein Interaction Mapping

KW - Protein Interaction Maps

U2 - 10.1093/nar/gkt887

DO - 10.1093/nar/gkt887

M3 - Journal article

C2 - 24081580

VL - 42

SP - D374-D379

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - D1

ER -

ID: 203256401