Biophysical properties at patch scale shape the metabolism of biofilm landscapes

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Biophysical properties at patch scale shape the metabolism of biofilm landscapes. / Depetris, Anna; Tagliavini, Giorgia; Peter, Hannes; Kühl, Michael; Holzner, Markus; Battin, Tom J.

In: npj Biofilms and Microbiomes, Vol. 8, 5, 2022.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Depetris, A, Tagliavini, G, Peter, H, Kühl, M, Holzner, M & Battin, TJ 2022, 'Biophysical properties at patch scale shape the metabolism of biofilm landscapes', npj Biofilms and Microbiomes, vol. 8, 5. https://doi.org/10.1038/s41522-022-00269-0

APA

Depetris, A., Tagliavini, G., Peter, H., Kühl, M., Holzner, M., & Battin, T. J. (2022). Biophysical properties at patch scale shape the metabolism of biofilm landscapes. npj Biofilms and Microbiomes, 8, [5]. https://doi.org/10.1038/s41522-022-00269-0

Vancouver

Depetris A, Tagliavini G, Peter H, Kühl M, Holzner M, Battin TJ. Biophysical properties at patch scale shape the metabolism of biofilm landscapes. npj Biofilms and Microbiomes. 2022;8. 5. https://doi.org/10.1038/s41522-022-00269-0

Author

Depetris, Anna ; Tagliavini, Giorgia ; Peter, Hannes ; Kühl, Michael ; Holzner, Markus ; Battin, Tom J. / Biophysical properties at patch scale shape the metabolism of biofilm landscapes. In: npj Biofilms and Microbiomes. 2022 ; Vol. 8.

Bibtex

@article{ab6de7ad789e43509e0a09bdd47ec67d,
title = "Biophysical properties at patch scale shape the metabolism of biofilm landscapes",
abstract = "Phototrophic biofilms form complex spatial patterns in streams and rivers, yet, how community patchiness, structure and function are coupled and contribute to larger-scale metabolism remains unkown. Here, we combined optical coherence tomography with automated O2 microprofiling and amplicon sequencing in a flume experiment to show how distinct community patches interact with the hydraulic environment and how this affects the internal distribution of oxygen. We used numerical simulations to derive rates of community photosynthetic activity and respiration at the patch scale and use the obtained parameter to upscale from individual patches to the larger biofilm landscape. Our biofilm landscape approach revealed evidence of parallels in the structure-function coupling between phototrophic biofilms and their streambed habitat.",
author = "Anna Depetris and Giorgia Tagliavini and Hannes Peter and Michael K{\"u}hl and Markus Holzner and Battin, {Tom J.}",
note = "Publisher Copyright: {\textcopyright} 2022, The Author(s).",
year = "2022",
doi = "10.1038/s41522-022-00269-0",
language = "English",
volume = "8",
journal = "n p j Biofilms and Microbomes",
issn = "2055-5008",
publisher = "nature publishing group",

}

RIS

TY - JOUR

T1 - Biophysical properties at patch scale shape the metabolism of biofilm landscapes

AU - Depetris, Anna

AU - Tagliavini, Giorgia

AU - Peter, Hannes

AU - Kühl, Michael

AU - Holzner, Markus

AU - Battin, Tom J.

N1 - Publisher Copyright: © 2022, The Author(s).

PY - 2022

Y1 - 2022

N2 - Phototrophic biofilms form complex spatial patterns in streams and rivers, yet, how community patchiness, structure and function are coupled and contribute to larger-scale metabolism remains unkown. Here, we combined optical coherence tomography with automated O2 microprofiling and amplicon sequencing in a flume experiment to show how distinct community patches interact with the hydraulic environment and how this affects the internal distribution of oxygen. We used numerical simulations to derive rates of community photosynthetic activity and respiration at the patch scale and use the obtained parameter to upscale from individual patches to the larger biofilm landscape. Our biofilm landscape approach revealed evidence of parallels in the structure-function coupling between phototrophic biofilms and their streambed habitat.

AB - Phototrophic biofilms form complex spatial patterns in streams and rivers, yet, how community patchiness, structure and function are coupled and contribute to larger-scale metabolism remains unkown. Here, we combined optical coherence tomography with automated O2 microprofiling and amplicon sequencing in a flume experiment to show how distinct community patches interact with the hydraulic environment and how this affects the internal distribution of oxygen. We used numerical simulations to derive rates of community photosynthetic activity and respiration at the patch scale and use the obtained parameter to upscale from individual patches to the larger biofilm landscape. Our biofilm landscape approach revealed evidence of parallels in the structure-function coupling between phototrophic biofilms and their streambed habitat.

U2 - 10.1038/s41522-022-00269-0

DO - 10.1038/s41522-022-00269-0

M3 - Journal article

C2 - 35115555

AN - SCOPUS:85124061641

VL - 8

JO - n p j Biofilms and Microbomes

JF - n p j Biofilms and Microbomes

SN - 2055-5008

M1 - 5

ER -

ID: 297353237