The genome of the cucumber, Cucumis sativus L
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The genome of the cucumber, Cucumis sativus L. / Huang, Sanwen; Li, Ruiqiang; Zhang, Zhonghua; Li, Li; Gu, Xingfang; Fan, Wei; Lucas, William J; Wang, Xiaowu; Xie, Bingyan; Ni, Peixiang; Ren, Yuanyuan; Zhu, Hongmei; Li, Jun; Lin, Kui; Jin, Weiwei; Fei, Zhangjun; Li, Guangcun; Staub, Jack; Kilian, Andrzej; van der Vossen, Edwin A G; Wu, Yang; Guo, Jie; He, Jun; Jia, Zhiqi; Ren, Yi; Tian, Geng; Lu, Yao; Ruan, Jue; Qian, Wubin; Wang, Mingwei; Huang, Quanfei; Li, Bo; Xuan, Zhaoling; Cao, Jianjun; Asan; Wu, Zhigang; Zhang, Juanbin; Cai, Qingle; Bai, Yinqi; Zhao, Bowen; Han, Yonghua; Li, Ying; Li, Xuefeng; Wang, Shenhao; Shi, Qiuxiang; Liu, Shiqiang; Cho, Won Kyong; Kim, Jae-Yean; Xu, Yong; Heller-Uszynska, Katarzyna; Miao, Han; Cheng, Zhouchao; Zhang, Shengping; Wu, Jian; Yang, Yuhong; Kang, Houxiang; Li, Man; Liang, Huiqing; Ren, Xiaoli; Shi, Zhongbin; Wen, Ming; Jian, Min; Yang, Hailong; Zhang, Guojie; Yang, Zhentao; Chen, Rui; Liu, Shifang; Li, Jianwen; Ma, Lijia; Liu, Hui; Zhou, Yan; Zhao, Jing; Fang, Xiaodong; Li, Guoqing; Fang, Lin; Li, Yingrui; Liu, Dongyuan; Zheng, Hongkun; Zhang, Yong; Qin, Nan; Li, Zhuo; Yang, Guohua; Yang, Shuang; Bolund, Lars; Kristiansen, Karsten; Zheng, Hancheng; Li, Shaochuan; Zhang, Xiuqing; Yang, Huanming; Wang, Jian; Sun, Rifei; Zhang, Baoxi; Jiang, Shuzhi; Wang, Jun; Du, Yongchen; Li, Songgang.
In: Nature Genetics, Vol. 41, No. 12, 2009, p. 1275-81.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - The genome of the cucumber, Cucumis sativus L
AU - Huang, Sanwen
AU - Li, Ruiqiang
AU - Zhang, Zhonghua
AU - Li, Li
AU - Gu, Xingfang
AU - Fan, Wei
AU - Lucas, William J
AU - Wang, Xiaowu
AU - Xie, Bingyan
AU - Ni, Peixiang
AU - Ren, Yuanyuan
AU - Zhu, Hongmei
AU - Li, Jun
AU - Lin, Kui
AU - Jin, Weiwei
AU - Fei, Zhangjun
AU - Li, Guangcun
AU - Staub, Jack
AU - Kilian, Andrzej
AU - van der Vossen, Edwin A G
AU - Wu, Yang
AU - Guo, Jie
AU - He, Jun
AU - Jia, Zhiqi
AU - Ren, Yi
AU - Tian, Geng
AU - Lu, Yao
AU - Ruan, Jue
AU - Qian, Wubin
AU - Wang, Mingwei
AU - Huang, Quanfei
AU - Li, Bo
AU - Xuan, Zhaoling
AU - Cao, Jianjun
AU - Asan, null
AU - Wu, Zhigang
AU - Zhang, Juanbin
AU - Cai, Qingle
AU - Bai, Yinqi
AU - Zhao, Bowen
AU - Han, Yonghua
AU - Li, Ying
AU - Li, Xuefeng
AU - Wang, Shenhao
AU - Shi, Qiuxiang
AU - Liu, Shiqiang
AU - Cho, Won Kyong
AU - Kim, Jae-Yean
AU - Xu, Yong
AU - Heller-Uszynska, Katarzyna
AU - Miao, Han
AU - Cheng, Zhouchao
AU - Zhang, Shengping
AU - Wu, Jian
AU - Yang, Yuhong
AU - Kang, Houxiang
AU - Li, Man
AU - Liang, Huiqing
AU - Ren, Xiaoli
AU - Shi, Zhongbin
AU - Wen, Ming
AU - Jian, Min
AU - Yang, Hailong
AU - Zhang, Guojie
AU - Yang, Zhentao
AU - Chen, Rui
AU - Liu, Shifang
AU - Li, Jianwen
AU - Ma, Lijia
AU - Liu, Hui
AU - Zhou, Yan
AU - Zhao, Jing
AU - Fang, Xiaodong
AU - Li, Guoqing
AU - Fang, Lin
AU - Li, Yingrui
AU - Liu, Dongyuan
AU - Zheng, Hongkun
AU - Zhang, Yong
AU - Qin, Nan
AU - Li, Zhuo
AU - Yang, Guohua
AU - Yang, Shuang
AU - Bolund, Lars
AU - Kristiansen, Karsten
AU - Zheng, Hancheng
AU - Li, Shaochuan
AU - Zhang, Xiuqing
AU - Yang, Huanming
AU - Wang, Jian
AU - Sun, Rifei
AU - Zhang, Baoxi
AU - Jiang, Shuzhi
AU - Wang, Jun
AU - Du, Yongchen
AU - Li, Songgang
N1 - Keywords: Cucumis sativus; DNA Transposable Elements; DNA, Plant; Gene Duplication; Genes, Plant; Genome, Plant; Immunity, Innate; Molecular Sequence Data; Plant Diseases; Repetitive Sequences, Nucleic Acid; Synteny
PY - 2009
Y1 - 2009
N2 - Cucumber is an economically important crop as well as a model system for sex determination studies and plant vascular biology. Here we report the draft genome sequence of Cucumis sativus var. sativus L., assembled using a novel combination of traditional Sanger and next-generation Illumina GA sequencing technologies to obtain 72.2-fold genome coverage. The absence of recent whole-genome duplication, along with the presence of few tandem duplications, explains the small number of genes in the cucumber. Our study establishes that five of the cucumber's seven chromosomes arose from fusions of ten ancestral chromosomes after divergence from Cucumis melo. The sequenced cucumber genome affords insight into traits such as its sex expression, disease resistance, biosynthesis of cucurbitacin and 'fresh green' odor. We also identify 686 gene clusters related to phloem function. The cucumber genome provides a valuable resource for developing elite cultivars and for studying the evolution and function of the plant vascular system.
AB - Cucumber is an economically important crop as well as a model system for sex determination studies and plant vascular biology. Here we report the draft genome sequence of Cucumis sativus var. sativus L., assembled using a novel combination of traditional Sanger and next-generation Illumina GA sequencing technologies to obtain 72.2-fold genome coverage. The absence of recent whole-genome duplication, along with the presence of few tandem duplications, explains the small number of genes in the cucumber. Our study establishes that five of the cucumber's seven chromosomes arose from fusions of ten ancestral chromosomes after divergence from Cucumis melo. The sequenced cucumber genome affords insight into traits such as its sex expression, disease resistance, biosynthesis of cucurbitacin and 'fresh green' odor. We also identify 686 gene clusters related to phloem function. The cucumber genome provides a valuable resource for developing elite cultivars and for studying the evolution and function of the plant vascular system.
U2 - 10.1038/ng.475
DO - 10.1038/ng.475
M3 - Journal article
C2 - 19881527
VL - 41
SP - 1275
EP - 1281
JO - Nature Genetics
JF - Nature Genetics
SN - 1061-4036
IS - 12
ER -
ID: 21336202