Department of Biology

 

 
  1. 2024
  2. Published

    The extrachromosomal circular DNA atlas of aged and young mouse brains

    Hong, X., Li, J., Han, Peng, Li, S., Yu, J., Zhang, H., Li, J., Dang, Y. & Xiang, X., 2024, In: Scientific Data. 11, 1, 8 p., 318.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published
  4. E-pub ahead of print

    The impact of the migraine treatment onabotulinumtoxinA on inflammatory and pain responses: Insights from an animal model

    Reducha, Philip Victor, Bömers, J. P., Edvinsson, L. & Haanes, Kristian Agmund, 2024, (E-pub ahead of print) In: Headache.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    The molecular basis for cellular function of intrinsically disordered protein regions

    Holehouse, A. S. & Kragelund, Birthe Brandt, 2024, In: Nature Reviews Molecular Cell Biology. 25, p. 187–211 25 p.

    Research output: Contribution to journalReviewResearchpeer-review

  6. Published

    The nightscape of the Arctic winter shapes the diving behavior of a marine predator

    Chambault, P., Teilmann, J., Tervo, O., Sinding, Mikkel Holger Strander & Heide-Jørgensen, M. P., 2024, In: Scientific Reports. 14, 1, 9 p., 3908.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    The relationships between biotic uniqueness and abiotic uniqueness are context dependent across drainage basins worldwide

    Snåre, H., García-Girón, J., Alahuhta, J., Bini, L. M., Boda, P., Bonada, N., Brasil, L. S., Callisto, M., Castro, D. M. P., Chen, K., Csabai, Z., Datry, T., Domisch, S., García-Marquez, J. R., Floury, M., Friberg, N., Gill, B. A., González-Trujillo, J. D., Göthe, E., Haase, P. & 29 others, Hamada, N., Hill, M. J., Hjort, J., Juen, L., Jupke, J. F., de Faria, A. P. J., Li, Z., Ligeiro, R., Linares, M. S., Luiza-Andrade, A., Macedo, D. R., Mathers, K. L., Mellado-Diaz, A., Milosevic, D., Moya, N., Poff, N. L. R., Rolls, R. J., Roque, F. O., Saito, V. S., Sandin, L., Schäfer, R. B., Scotti, A., Siqueira, T., Martins, R. T., Valente-Neto, F., Wang, B., Wang, J., Xie, Z. & Heino, J., 2024, In: Landscape Ecology. 39, 4, 18 p., 86.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    The role of neighbour proximity and context on meerkat close call acoustic structure

    Driscoll, I., Briefer, Elodie & Manser, M. B., 2024, In: Animal Behaviour. 212, p. 113-126 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    The rostral micro-tooth morphology of blue marlin, Makaira nigricans

    Pacher, K., Breuker, M., Hansen, M. J., Kurvers, R. H. J. M., Häge, J., Dhellemmes, F., Domenici, P., Steffensen, John Fleng, Krause, S., Hildebrandt, T., Fritsch, G., Bach, P., Sabarros, P. S., Zaslansky, P., Mahlow, K., Müller, J., Armas, R. G., Ortiz, H. V., Galván-Magaña, F. & Krause, J., 2024, In: Journal of Fish Biology. 104, 3, p. 713-722 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    The tick Ixodes scapularis has five different GPCRs specifically activated by ACP (adipokinetic hormone/corazonin-related peptide)

    Hauser, Frank, Stebegg, M., Al-Ribaty, T., Petersen, L. B., Møller, M., Drag, Markus Hodal, Sigurdsson, H. H., Vilhelm, M. J., Thygesen, G. & Grimmelikhuijzen, Cornelis (Cok), 2024, In: Biochemical and Biophysical Research Communications. 717, 7 p., 149992.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    The use of biomimetic surfaces to reduce single- and dual-species biofilms of Escherichia coli and Pseudomonas putida

    Teixeira-Santos, R., Azevedo, A., Romeu, M. J., Amador Hierro, Cristina Isabel, Gomes, L. C., Whitehead, K. A., Sjollema, J., Burmølle, Mette & Mergulhão, F. J., 2024, In: Biofilm. 7, 13 p., 100185.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Translational frontiers: insight from lymphatics in skin regeneration

    Jiang, Y. & Perez-Moreno, Mirna, 2024, In: Frontiers in Physiology. 15, 8 p., 1347558.

    Research output: Contribution to journalReviewResearchpeer-review

  13. Published

    Transmembrane transporter proteins: Capturing transport in motion

    Loland, Claus Juul, Wellendorph, Petrine, Pedersen, Stine Helene Falsig & Gether, Ulrik, 2024, In: Basic and Clinical Pharmacology and Toxicology. 134, 2, p. 203-205 3 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  14. Published

    Type XXIII collagen

    Crespo Bravo, Marina, Kehlet, S. N., Jessen, H. & Karsdal, M. A., 2024, Biochemistry of Collagens, Laminins and Elastin: Structure, Function and Biomarkers. 3 ed. Elsevier, p. 199-202 4 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  15. Published

    Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems

    Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.

    Research output: Book/ReportPh.D. thesisResearch

  16. Published

    Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

    Polauke, E., Sø, Jonas Stage, Carl, Henrik, Møller, Peter Rask, Reitzel, K., Sand-Jensen, Kaj & Kragh, T., 2024, In: Journal of Environmental Management. 356, 13 p., 120570.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    vcfpp: a C++ API for rapid processing of the variant call format

    Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. 2023
  19. Published

    Cold-stimulated brown adipose tissue activation is related to changes in serum metabolites relevant to NAD+ metabolism in humans

    U-Din, M., de Mello, V. D., Tuomainen, M., Raiko, J., Niemi, T., Fromme, T., Klåvus, A., Gautier, N., Haimilahti, K., Lehtonen, M., Kristiansen, Karsten, Newman, J. W., Pietiläinen, K. H., Pihlajamäki, J., Amri, E. Z., Klingenspor, M., Nuutila, P., Pirinen, E., Hanhineva, K. & Virtanen, K. A., 26 Sep 2023, In: Cell Reports. 42, 9, 23 p., 113131.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species

    Dai, X., Bian, P., Hu, D., Luo, F., Huang, Y., Jiao, S., Wang, X., Gong, M., Li, R., Cai, Y., Wen, J., Yang, Q., Deng, W., Nanaei, H. A., Wang, Y., Wang, F., Zhang, Z., Rosen, B. D., Heller, Rasmus & Jiang, Y., Aug 2023, In: Genome Research. 33, 8, p. 1284-1298 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Fitting Force Field Parameters to NMR Relaxation Data

    Kümmerer, Felix, Orioli, S. & Lindorff-Larsen, Kresten, 5 Jun 2023, In: Journal of Chemical Theory and Computation. 19, 12, p. 3741-3751 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Nyt udstyr måler tabene af metan og CO2 fra søer

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, K. T. & Kragh, T., 25 May 2023, Videnskab.dk.

    Research output: Other contributionNet publication - Internet publicationCommunication

  23. Published

    Fra forsøg til forankring: Flersproget faglig skrivning på bacheloruddannelsen i biokemi

    Larsen, Sanne, Laursen, Katja Årosin & Skriver, Karen, 3 May 2023, In: Dansk universitetspædagogisk tidsskrift [online]. p. 25-40 16 p.

    Research output: Contribution to journalJournal articleCommunication

  24. Published

    Modeling of flexible membrane-bound biomolecular complexes for solution small-angle scattering

    Barclay, A., Kragelund, Birthe Brandt, Arleth, Lise & Pedersen, Martin Cramer, Apr 2023, In: Journal of Colloid and Interface Science. 635, p. 611-621 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Genetic architecture of spatial electrical biomarkers for cardiac arrhythmia and relationship with cardiovascular disease

    Young, W. J., Haessler, J., Benjamins, J-W., Repetto, L., Yao, J., Isaacs, A., Harper, A. R., Ramirez, J., Garnier, S., van Duijvenboden, S., Baldassari, A. R., Concas, M. P., Duong, T., Foco, L., Isaksen, J. L., Mei, H., Noordam, R., Nursyifa, C., Richmond, A., Santolalla, M. L. & 74 others, Sitlani, C. M., Soroush, N., Thériault, S., Trompet, S., Aeschbacher, S., Ahmadizar, F., Alonso, A., Brody, J. A., Campbell, A., Correa, A., Darbar, D., De Luca, A., Deleuze, J., Ellervik, Christina, Fuchsberger, C., Goel, A., Grace, C., Guo, X., Hansen, Torben, Heckbert, S. R., Jackson, R. D., Kors, J. A., Lima-Costa, M. F., Linneberg, Allan René, Macfarlane, P. W., Morrison, A. C., Navarro, P., Porteous, D. J., Pramstaller, P. P., Reiner, A. P., Risch, L., Schotten, U., Shen, X., Sinagra, G., Soliman, E. Z., Stoll, M., Tarazona-Santos, E., Tinker, A., Trajanoska, K., Villard, E., Warren, H. R., Whitsel, E. A., Wiggins, K. L., Arking, D. E., Avery, C. L., Conen, D., Girotto, G., Grarup, Niels, Hayward, C., Jukema, J. W., Mook-Kanamori, D. O., Olesen, Morten Steen Salling, Padmanabhan, S., Psaty, B. M., Pattaro, C., Ribeiro, A. L. P., Rotter, J. I., Stricker, B. H., van der Harst, P., van Duijn, C. M., Verweij, N., Wilson, J. G., Orini, M., Charron, P., Watkins, H., Kooperberg, C., Lin, H. J., Wilson, J. F., Kanters, Jørgen K., Sotoodehnia, N., Mifsud, B., Lambiase, P. D., Tereshchenko, L. G. & Munroe, P. B., 14 Mar 2023, In: Nature Communications. 14, 1, 16 p., 1411.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    2023 BMC Ecology and Evolution image competition: the winning images

    Harman, J., Hipsley, Christy Anna, Jacobus, L. M., Liberles, D. A., Settele, J. & Traulsen, A., 2023, In: BMC Ecology and Evolution. 23, 1, 7 p., 32.

    Research output: Contribution to journalEditorialResearch

  27. Published

    Actinarctus doryphorus (Tanarctidae) DNA barcodes and phylogenetic reinvestigation of Arthrotardigrada with new A. doryphorus and Echiniscoididae sequences

    Grollmann, M. M., Jørgensen, Aslak & Møbjerg, Nadja, 2023, In: Zootaxa. 5284, 2, p. 351-363 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Bacillus thuringiensis toxins divert progenitor cells toward enteroendocrine fate by decreasing cell adhesion with intestinal stem cells in Drosophila

    Jneid, Rouba, Loudhaief, Rihab, Zucchini-Pascal, N., Nawrot-Esposito, M. P., Fichant, A., Rousset, R., Bonis, M., Osman, D. & Gallet, A., 2023, In: eLife. 12, 34 p., e80179.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Bacillus velezensis SQR9 inhibition to fungal denitrification responsible for decreased N2O emissions from acidic soils

    Huang, Mengyuan, Zhang, Y., Wu, J., Wang, Y., Xie, Y., Geng, Y., Zhang, N., Michelsen, Anders, Li, S., Zhang, R., Shen, Q. & Zou, J., 2023, In: Science of the Total Environment. 885, 10 p., 163789.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Baldinia droopii sp. nov. (Suessiales, Dinophyceae), a new species from a small rainwater rock pool near Tvarminne, south-western Finland

    Hansen, Gert, Daugbjerg, Niels & Moestrup, Øjvind, 2023, In: Phycologia. 62, 1, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Drosophila TNF/TNFRs: At the crossroad between metabolism, immunity, and tissue homeostasis

    Colombani, Julien & Andersen, Ditte Skovaa, 2023, In: FEBS Letters. 597, 19, p. 2416-2432 17 p.

    Research output: Contribution to journalReviewResearchpeer-review

  32. Published

    Gambierdiscus (gonyaulacales, dinophyceae) diversity in Vietnamese waters with description of G. vietnamensis sp. nov.

    Nguyen-Ngoc, L., Larsen, Jacob, Doan-Nhu, H., Nguyen, X. V., Chomérat, N., Lundholm, Nina, Phan-Tan, L., Dao, H. V., Nguyen, N. L., Nguyen, H. H. & Van Chu, T., 2023, In: Journal of Phycology. 59, 3, p. 496-517

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Legionella maioricensis sp. nov., a new species isolated from the hot water distribution systems of a hospital and a shopping center during routine sampling

    Crespi, S., Drašar, V., Salvà-Serra, F., Jaén-Luchoro, D., Piñeiro-Iglesias, B., Lindemann, P. C., Aliaga-Lozano, F., Fernandez Juarez, Victor, Coll-García, G., Moore, E. R. B. & Bennasar-Figueras, A., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 1, 12 p., 005686.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Marchantiana pyramus, M. ramulicola and Austroplaca thisbe (Teloschistaceae, lichenized Ascomycota) - three new twig lichens from southern Patagonia

    Søchting, Ulrik, Sancho, L. G. & Arup, U., 2023, In: Lichenologist. 55, 5, p. 377-387 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Mycena species can be opportunist-generalist plant root invaders

    Harder, Christoffer Bugge, Hesling, E., Botnen, S. S., Lorberau, K. E., Dima, B., von Bonsdorff-Salminen, T., Niskanen, T., Jarvis, S. G., Ouimette, A., Hester, A., Hobbie, E. A., Taylor, A. F. S. & Kauserud, H., 2023, In: Environmental Microbiology. 25, 10, 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Teuvoahtiana meridionalis, a new species from Patagonia and Antarctica

    Halıcı, M. G., Søchting, Ulrik, Yiğit, M. K. & Arup, U., 2023, In: Nova Hedwigia. 116, 3-4, p. 417-432 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Xyloplax princealberti (Asteroidea, Echinodermata): A New Species That Is Not Always Associated with Wood Falls

    Payne, C. Y., Tilic, E., Boschen-Rose, R. E., Gannon, A., Stiller, Josefin, Hiley, A. S., Grupe, B. M., Mah, C. L. & Rouse, G. W., 2023, In: Diversity. 15, 12, 21 p., 1212.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    A Gluten-Free Diet during Pregnancy and Early Life Increases Short Chain Fatty Acid-Producing Bacteria and Regulatory T Cells in Prediabetic NOD Mice

    Johansen, Valdemar Brimnes Ingemann, Færø, D., Buschard, K., Kristiansen, Karsten, Pociot, Flemming, Kiilerich, P., Josefsen, K., Haupt-jorgensen, M. & Antvorskov, J. C., 2023, In: Cells. 12, 12, 15 p., 1567.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    A High Resolution, High Throughput Approach for Subcellular Spatial Omics

    CHEN, Ao, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.

    Research output: Book/ReportPh.D. thesisResearch

  41. Published

    A Roundtable on the Skjern River Delta and New Narratives in Nature Restoration: A Swampy and Impenetrable Landscape with Unpredictable Natural Dynamics

    Bruun, Hans Henrik, Ejrnæs, R., Brunbjerg, A. K., Larsen, R. E., Dalgas, G. S. & Carstensen, J. S., 2023, Critical Coast. Arkitektens Forlag, 20 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterCommunication

  42. Published

    A YTHDF–PABP interaction is required for m6A-mediated organogenesis in plants

    Tankmar, Mathias Due, Reichel, M., Arribas Hernandez, Laura & Brodersen, Peter, 2023, In: EMBO Reports. 24, 12, 19 p., e57741.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    A catalog of bacterial reference genomes from cultivated human oral bacteria

    Li, W., Liang, H., Lin, X., Hu, T., Wu, Z., He, W., Wang, M., Zhang, J., Jie, Zhuye, Jin, X., Xu, X., Wang, J., Yang, H., Zhang, W., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2023, In: npj Biofilms and Microbiomes. 9, 1, 13 p., 45.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    A clade of RHH proteins ubiquitous in Sulfolobales and their viruses regulates cell cycle progression

    Li, X., Lozano-Madueno, C., Martinez Alvarez, Laura & Peng, Xu, 2023, In: Nucleic acids symposium series. 51, 4, 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    A comprehensive map of human glucokinase variant activity

    Andersen, Sarah Gersing, Cagiada, Matteo, Gebbia, M., Gjesing, A. P., Coté, A. G., Seesankar, G., Li, R., Tabet, D., Weile, J., Stein, Amelie, Gloyn, A. L., Hansen, Torben, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: Genome Biology. 24, 1, 23 p., 97.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    A consortium of three-bacteria isolated from human feces inhibits formation of atherosclerotic deposits and lowers lipid levels in a mouse model

    Jie, Z., Zhu, Q., Zou, Y., Wu, Q., Qin, M., He, D., Lin, X., Tong, X., Zhang, J., Jie, Z., Luo, W., Xiao, X., Chen, S., Wu, Y., Guo, G., Zheng, S., Li, Y., Lai, W., Yang, H., Wang, J. & 6 others, Xiao, L., Chen, J., Zhang, T., Kristiansen, Karsten, Jia, H. & Zhong, S., 2023, In: iScience. 26, 6, 22 p., 106960.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    A corazonin G protein-coupled receptor gene in the tick Ixodes scapularis yields two splice variants, each coding for a specific corazonin receptor

    Hauser, Frank, Pallesen, M., Lehnhoff, J., Li, S., Lind, A. & Grimmelikhuijzen, Cornelis (Cok), 2023, In: Biochemical and Biophysical Research Communications. 666, p. 162-169 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    A distinct circular DNA profile intersects with proteome changes in the genotoxic stress-related hSOD1G93A model of ALS

    Gerovska, D., Noer, Julie Boertmann, Qin, Yating, Ain, Q., Januzi, D., Schwab, M., Witte, O. W., Araúzo-Bravo, M. J. & Kretz, A., 2023, In: Cell and Bioscience. 13, 1, 25 p., 170.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    A genome and single-nucleus cerebral cortex transcriptome atlas of the short-finned pilot whale Globicephala macrorhynchus

    Kang, H., Liu, Qun, Seim, I., Zhang, W., Li, H., Gao, H., Lin, W., Lin, M., Zhang, P., Zhang, Y., Gao, H., Wang, Y., Qin, Yating, Liu, M., Dong, L., Yang, Z., Zhang, Y., Han, L., Fan, G. & Li, S., 2023, In: Molecular Ecology Resources. 23, 5, 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    A global catalog of whole-genome diversity from 233 primate species

    Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S. & 55 others, Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Rogers, J., Farh, K. K. H. & Marques Bonet, T., 2023, In: Science (New York, N.Y.). 380, 6648, p. 906-913 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    A host of armor: Prokaryotic immune strategies against mobile genetic elements

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Birkholz, N. & Fineran, P. C., 2023, In: Cell Reports. 42, 7, 14 p., 112672.

    Research output: Contribution to journalReviewResearchpeer-review

  52. Published

    A meta-analysis of plant tissue O2 dynamics

    Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Functional Plant Biology. 50, 7, 13 p.

    Research output: Contribution to journalReviewResearchpeer-review

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