- 2023
- Published
CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis
Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of industrially-produced Lacticaseibacillus rhamnosus GG and Lactobacillus acidophilus LA-5: Analysis of genomic integrity, transcriptome and phenotypes
Strickertsson, Marianne Stage, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 206 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Chronic acidosis rewires cancer cell metabolism through PPARα signaling
Rolver, M. G., Holland, L. K. K., Ponniah, M., Prasad, N. S., Yao, Jiayi, Schnipper, J., Kramer, S., Elingaard-Larsen, L., Pedraz-Cuesta, E., Liu, B., Pardo, L. A., Maeda, K., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2023, In: International Journal of Cancer. 152, 8, 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Clinical diagnosis of genetic disorders at both single-nucleotide and chromosomal levels based on BGISEQ-500 platform
Liu, Y., Mao, L., Huang, H., Li, W., Man, J., Zhang, W., Wang, L., Li, L., Sun, Y., Zhai, T., Guo, X., Du, L., Huang, J., Li, H., Wan, Y. & Wei, X., 2023, In: Human Genome Variation. 10, 1, 43 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ClockstaRX: testing molecular clock hypotheses with genomic data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.Research output: Working paper › Preprint › Research
- Published
Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo
Quinn, Liam James Elgaard, Garcia Erill, Genís, Santander, Cindy, Brüniche-Olsen, Anna, Liu, Xiaodong, Sinding, Mikkel Holger Strander, Heaton, M. P., Smith, T. P. L., Chrzanová Pecnerová, Patrícia, Bertola, Laura, Hanghøj, Kristian Ebbesen, Rasmussen, Malthe Sebro, De Jager, Deon, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus & Moltke, Ida, 2023, In: Molecular Ecology. 32, 8, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology
de Flamingh, A., Ishida, Y., Chrzanová Pecnerová, Patrícia, Vilchis, S., Siegismund, Hans Redlef, van Aarde, R. J., Malhi, R. S. & Roca, A. L., 2023, In: Frontiers in Genetics. 13, 14 p., 1021004.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations
Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing
Hernández-Alonso, G., Ramos-Madrigal, J., Sun, X., Scharff-Olsen, C. H., Sinding, M. H. S., Martins, N. F., Ciucani, M. M., Mak, S. S. T., Lanigan, L. T., Clausen, C. G., Bhak, J., Jeon, S., Kim, C., Eo, K. Y., Cho, S. H., Boldgiv, B., Gantulga, G., Unudbayasgalan, Z., Kosintsev, P. A., Stenøien, H. K. & 2 others, , 2023, In: Ecology and Evolution. 13, 8, 15 p., e10404.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Convergent molecular evolution of thermogenesis and circadian rhythm in Arctic ruminants
Li, M., Li, X., Wu, Z., Zhang, G., Wang, N., Dou, M., Liu, S., Yang, C., Meng, G., Sun, H., Hvilsom, C., Xie, G., Li, Y., Li, Z. H., Wang, W., Jiang, Y., Heller, Rasmus & Wang, Y., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 1999, 10 p., 20230538.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crosstalk between tumor acidosis, p53 and extracellular matrix regulates pancreatic cancer aggressiveness
Czaplinska, D., Ialchina, Renata, Andersen, Henriette Berg, Yao, Jiayi, Stigliani, Arnaud, Dannesboe, Johs, Flinck, M., Chen, X., Mitrega, J., Gnosa, S. P., Dmytriyeva, O., Alves, F., Napp, J., Sandelin, Albin Gustav & Pedersen, Stine Helene Falsig, 2023, In: International Journal of Cancer. 152, 6, p. 1210-1225 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA metabarcoding illuminates the contribution of small and very small prey taxa to the diet of lions
Groen, K., Beekenkamp, S., de Iongh, H. H., Lesilau, F., Chege, M., Narisha, L., Veldhuis, M., Bertola, Laura, van Bodegom, P. M. & Trimbos, K. B., 2023, In: Environmental DNA. 5, 6, p. 1321-1331 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering regulatory mechanisms underlying gene co-activity
van Duin, Lucas, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 131 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Deep integrative models for large-scale human genomics
Sigurdsson, Arnór Ingi, Louloudis, Ioannis, Banasik, Karina, Westergaard, D., Winther, Ole, Lund, O., Ostrowski, Sisse Rye, Erikstrup, C., Pedersen, Ole Birger Vesterager, Nyegaard, Mette, Brunak, Søren, Vilhjálmsson, B. & Rasmussen, Simon, 2023, In: Nucleic Acids Symposium Series. 51, 12, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep-sequencing of viral genomes from a large and diverse cohort of treatment-naive HIV-infected persons shows associations between intrahost genetic diversity and viral load
INSIGHT START Study Group, I. S. S. G., 2023, In: PLOS Computational Biology. 19, 1, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DeepPeptide predicts cleaved peptides in proteins using conditional random fields
Teufel, Felix Georg, Refsgaard, J. C., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Bioinformatics (Oxford, England). 39, 10, 6 p., btad616.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deorphanizing Peptides Using Structure Prediction
Teufel, Felix Georg, Refsgaard, J. C., Kasimova, M. A., Deibler, K., Madsen, C. T., Stahlhut, C., Grønborg, M., Winther, Ole & Madsen, D., 2023, In: Journal of Chemical Information and Modeling. 63, 9, 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DermX: An end-to-end framework for explainable automated dermatological diagnosis
Jalaboi, R., Faye, F., Orbes-Arteaga, M., Jørgensen, D., Winther, Ole & Galimzianova, A., 2023, In: Medical Image Analysis. 83, 12 p., 102647.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting host responses to microbial stimulation using primary epithelial organoids
Lange, Jette Bornholdt, Müller, C. V., Nielsen, M. J., Strickertsson, J., Rago, D., Chen, Y., Maciag, Grzegorz Jerzy, Skov, Jonathan, Wellejus, A., Schweiger, P. J., Hansen, Stine Lind, Broholm, C., Gögenur, Ismail, Maimets, Martti, Sloth, S., Hendel, J., Baker, A., Sandelin, Albin Gustav & Jensen, Kim Bak, 2023, In: Gut Microbes. 15, 2, 16 p., 2281012.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DoxoDB: A Database for the Expression Analysis of Doxorubicin-Induced lncRNA Genes
Distefano, R., Ilieva, M., Madsen, J. H., Rennie, Sarah & Uchida, S., 2023, In: Non-coding RNA. 9, 4, 24 p., 39.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Editorial: Long-read sequencing—Pitfalls, benefits and success stories
Wohlers, I., Garg, S. & Hehir-Kwa, J. Y., 2023, In: Frontiers in Genetics. 13, 3 p., 1114542.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Estimating admixture pedigrees of recent hybrids without a contiguous reference genome
Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of population structure inferred by principal component analysis or the admixture model
Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau
Chen, N., Zhang, Z., Hou, J., Chen, J., Gao, X., Tang, L., Wangdue, S., Zhang, X., Sinding, Mikkel Holger Strander, Liu, X., Han, J., Lü, H., Lei, C., Marshall, F. & Liu, X., 2023, In: Science Advances. 9, 50, 13 p., eadi6857.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Explainable Image Quality Assessments in Teledermatological Photography
Jalaboi, R., Winther, Ole & Galimzianova, A., 2023, In: Telemedicine and e-Health. 29, 9, p. 1342-1348 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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True single-molecule DNA sequencing of a pleistocene horse bone
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Characterizing glucokinase variant mechanisms using a multiplexed abundance assay
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Pulmonary maternal immune activation does not cross the placenta but leads to fetal metabolic adaptation
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