thw266 KU
Professor, Affiliate Professor
- 2024
- Published
Identification of constrained sequence elements across 239 primate genomes
Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J. & 72 others, , 2024, In: Nature. 625, p. 735–742 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient and Modern Genomes Reveal Microsatellites Maintain a Dynamic Equilibrium Through Deep Time
McComish, B. J., Charleston, M. A., Parks, M., Baroni, C., Salvatore, M. C., Li, R., KU, thw266, Millar, C. D., Holland, B. R. & Lambert, D. M., 2024, In: Genome Biology and Evolution. 16, 3, 11 p., evae017.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A region of suppressed recombination misleads neoavian phylogenomics
Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complexity of avian evolution revealed by family-level genomes
Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, , 1 Apr 2024, In: Nature.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ETV2 induces endothelial, but not hematopoietic, lineage specification in birds
Weng, W., Deng, Y., Deviatiiarov, R., Hamidi, S., Kajikawa, E., Gusev, O., Kiyonari, H., KU, thw266 & Sheng, G., 2024, In: Life Science Alliance. 7, 6, 12 p., e202402694.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Evolution of the germline mutation rate across vertebrates
Bergeron, Lucie Adrienne, Besenbacher, S., Zheng, J., Li, P., Bertelsen, Mads Frost, Quintard, B., Hoffman, J. I., Li, Z., Leger, J. S., Shao, C., Stiller, Josefin, Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2023, In: Nature. 615, p. 285-291Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lineage-specific accelerated sequences underlying primate evolution
Bi, X., Zhou, L., Zhang, J., Feng, S., Hu, M., Cooper, D. N., Lin, J., Li, J., Wu, D. & KU, thw266, 2023, In: Science Advances. 9, 22, 12 p., eadc9507.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The landscape of tolerated genetic variation in humans and primates
Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R., Balick, D. & 77 others, , 2023, In: Science (New York, N.Y.). 380, 6648, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Species-specific traits mediate avian demographic responses under past climate change
Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2023, In: Nature Ecology and Evolution. 7, 6, p. 862-872 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Harvesting the fruits of the first stage of the Primate Genome Project
Guo, Y. T., Shao, Y., Bi, X., Zhang, B. L., Wu, H., Zhou, Y., Li, M. L., Yu, L., KU, thw266, Wu, D. D. & Qi, X. G., 2023, In: Zoological research. 44, 4, p. 725-728 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A global catalog of whole-genome diversity from 233 primate species
Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S. & 55 others, , 2023, In: Science (New York, N.Y.). 380, 6648, p. 906-913 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pervasive incomplete lineage sorting illuminates speciation and selection in primates
Rivas-González, I., Rousselle, M., Li, F., Zhou, L., Dutheil, J. Y., Munch, K., Shao, Y., Wu, D., Schierup, M. H. & KU, thw266, 2023, In: Science (New York, N.Y.). 380, 6648, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights
Shao, C., Sun, S., Liu, K., Wang, J., Li, S., Liu, Q., Deagle, B. E., Seim, I., Biscontin, A., Wang, Q., Liu, X., Kawaguchi, S., Liu, Y., Jarman, S., Wang, Y., Wang, H. Y., Huang, G., Hu, J., Feng, B., De Pittà, C. & 29 others, , 2023, In: Cell. 186, 6, p. 1279-1294.e19 36 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomic analyses provide insights into primate evolution
Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B. L., Shao, F., Chen, J. W., Chen, C. Y., Bi, X., Zhuang, X. L., Zhu, H. L., Hu, J., Sun, Z., Li, X., Wang, D., Rivas-González, I., Wang, S., Wang, Y. M., Chen, W., Li, G. & 23 others, , 2023, In: Science (New York, N.Y.). 380, 6648, p. 913-924 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parallel evolution of fish bi-modal breathing and expansion of olfactory receptor (OR) genes: toward a universal ORs nomenclature
Silva, L., Mendes, T., Ramos, L., KU, thw266 & Antunes, A., 2023, In: Journal of Genetics and Genomics. 50, 8, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros
Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How genomics can help biodiversity conservation
The European Reference Genome Atlas Consortium, T. E. R. G. A. C., 2023, In: Trends in Genetics. 39, 7, 15 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Comparative genomics reveals the hybrid origin of a macaque group
Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, , 2023, In: Science Advances. 9, 22, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the origin and evolution of RNA editing in metazoans
Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Eighty million years of rapid evolution of the primate Y chromosome
Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N., Qi, X. & 3 others, , 2023, In: Nature Ecology and Evolution. 7, 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates
Bergeron, Lucie Adrienne, Besenbacher, S., Turner, T. N., Versoza, C. J., Wang, R. J., Price, A. L., Armstrong, E., Riera, M., Carlson, J., Chen, Hwei-Yen, Hahn, M. W., Harris, K., Kleppe, A. S., López-Nandam, E. H., Moorjani, P., Pfeifer, S. P., Tiley, G. P., Yoder, A. D., KU, thw266 & Schierup, M. H., 2022, In: eLife. 11, 28 p., e73577.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Why sequence all eukaryotes?
Blaxter, M., Archibald, J. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Di Palma, F., Durbin, R., Edwards, S. V., Graves, J. A. M., Hackett, K. J., Hall, N., Jarvis, E. D., Johnson, R. N., Karlsson, E. K., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Lindblad-Toh, K., Lopez, J. V., Moran, N. A. & 7 others, , 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 4, 9 p., e2115636118.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird
Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic insights into the secondary aquatic transition of penguins
Cole, T. L., Zhou, C., Fang, M., Pan, H., Ksepka, D. T., Fiddaman, S. R., Emerling, C. A., Thomas, D. B., Bi, X., Fang, Q., Ellegaard, M. R., Feng, S., Smith, A. L., Heath, T. A., Tennyson, A. J. D., Borboroglu, P. G., Wood, J. R., Hadden, P. W., Grosser, S., Bost, C. A. & 20 others, , 2022, In: Nature Communications. 13, 13 p., 3912.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient proteins resolve controversy over the identity of Genyornis eggshell
Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 40294134
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3206
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Molecular traces of alternative social organization in a termite genome
Research output: Contribution to journal › Journal article › Research › peer-review
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3123
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Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
Research output: Contribution to journal › Journal article › Research › peer-review
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2705
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Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
Research output: Contribution to journal › Journal article › Research › peer-review
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