Kresten Lindorff-Larsen

Kresten Lindorff-Larsen

Professor

ORCID: 0000-0002-4750-6039

Publication year:
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101 - 125 out of 210Page size: 25
  1. 2019
  2. Published

    Barnaba: software for analysis of nucleic acid structures and trajectories

    Bottaro, S., Bussi, G., Pinamonti, G., Reisser, S., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2019, In: RNA. 25, 2, p. 219-231

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Bayesian-Maximum-Entropy Reweighting of IDP Ensembles Based on NMR Chemical Shifts

    Crehuet, R., Buigues, P. J., Salvatella, X. & Lindorff-Larsen, Kresten, 2019, In: Entropy. 21, 9, 17 p., 898.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Biophysical and Mechanistic Models for Disease-Causing Protein Variants

    Stein, Amelie, Fowler, D. M., Hartmann-Petersen, Rasmus & Lindorff-Larsen, Kresten, 2019, In: Trends in Biochemical Sciences. 44, 7, p. 575-588

    Research output: Contribution to journal › Review › Research › peer-review

  5. Published

    Computational and cellular studies reveal structural destabilization and degradation of MLH1 variants in Lynch syndrome

    Abildgaard, A. B., Stein, Amelie, Nielsen, S. V., Schultz-Knudsen, Katrine, Papaleo, E., Shrikhande, A., Hoffmann, Eva, Bernstein, I., Gerdes, Anne-Marie Axø, Takahashi, M., Ishioka, C., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, In: eLife. 8, 28 p., e49138 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Dissecting the statistical properties of the linear extrapolation method of determining protein stability

    Lindorff-Larsen, Kresten, 2019, In: Protein engineering, design & selection : PEDS. 32, 10, p. 471-479 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Fitting Corrections to an RNA Force Field Using Experimental Data

    Cesari, A., Bottaro, S., Lindorff-Larsen, Kresten, Banás, P., Sponer, J. & Bussi, G., 2019, In: Journal of Chemical Theory and Computation. 15, 6, p. 3425-3431

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Promoting transparency and reproducibility in enhanced molecular simulations

    Bonomi, M., Bussi, G., Camilloni, C., Tribello, G. A., Banas, P., Barducci, A., Bernetti, M., Bolhuis, P. G., Bottaro, S., Branduardi, D., Capelli, R., Carloni, P., Ceriotti, M., Cesari, A., Chen, H., Chen, W., Colizzi, F., De, S., De La Pierre, M., Donadio, D. & 54 others, Drobot, V., Ensing, B., Ferguson, A. L., Filizola, M., Fraser, J. S., Fu, H., Gasparotto, P., Gervasio, F. L., Giberti, F., Gil-Ley, A., Giorgino, T., Heller, G. T., Hocky, G. M., Iannuzzi, M., Invernizzi, M., Jelfs, K. E., Jussupow, A., Kirilin, E., Laio, A., Limongelli, V., Lindorff-Larsen, Kresten, Lohr, T., Marinelli, F., Martin-Samos, L., Masetti, M., Meyer, R., Michaelides, A., Molteni, C., Morishita, T., Nava, M., Paissoni, C., Papaleo, E., Parrinello, M., Pfaendtner, J., Piaggi, P., Piccini, G., Pietropaolo, A., Pietrucci, F., Pipolo, S., Provasi, D., Quigley, D., Raiteri, P., Raniolo, S., Rydzewski, J., Salvalaglio, M., Sosso, G. C., Spiwok, V., Sponer, J., Swenson, D. W. H., Tiwary, P., Valsson, O., Vendruscolo, M., Voth, G. A. & White, A., 2019, In: Nature Methods. 16, 8, p. 670-673

    Research output: Contribution to journal › Editorial › Research › peer-review

  9. Published

    Protein stability and degradation in health and disease

    Bjørnkjær, Lene, Abildgaard, A. B., Gersing, S. K., Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, Molecular Chaperones in Human Disorders. Donev, R. (ed.). Academic Press, p. 61-83 (Advances in Protein Chemistry and Structural Biology, Vol. 114).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  10. Published

    Side chain to main chain hydrogen bonds stabilize a polyglutamine helix in a transcription factor

    Escobedo, A., Topal, B., Kunze, M. B. A., Aranda, J., Chiesa, G., Mungianu, D., Bernardo-Seisdedos, G., Eftekharzadeh, B., Gairí, M., Pierattelli, R., Felli, I. C., Diercks, T., Millet, O., García, J., Orozco, M., Crehuet, R., Lindorff-Larsen, Kresten & Salvatella, X., 2019, In: Nature Communications. 10, 11 p., 2034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Structural Basis for Properdin Oligomerization and Convertase Stimulation in the Human Complement System

    Pedersen, D. V., Gadeberg, T. A. F., Thomas, C., Wang, Y., Joram, N., Jensen, R. K., Mazarakis, S. M. M., Revel, M., El Sissy, C., Petersen, S. V., Lindorff-Larsen, Kresten, Thiel, S., Laursen, N. S., Fremeaux-Bacchi, V. & Andersen, G. R., 2019, In: Frontiers in Immunology. 10, 19 p., 2007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Substrate-induced conformational dynamics of the dopamine transporter

    Nielsen, A. K., Möller, I. R., Wang, Y., Rasmussen, Søren Gøgsig Faarup, Lindorff-Larsen, Kresten, Rand, Kasper Dyrberg & Loland, Claus Juul, 2019, In: Nature Communications. 10, 14 p., 2714.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Toward mechanistic models for genotype-phenotype correlations in phenylketonuria using protein stability calculations

    Scheller, R., Stein, Amelie, Nielsen, S. V., Marin, F. I., Gerdes, Anne-Marie Axø, Di Marco, M., Papaleo, E., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, In: Human Mutation. 40, 4, p. 444-457

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. 2018
  15. Published

    On the Calculation of SAXS Profiles of Folded and Intrinsically Disordered Proteins from Computer Simulations

    Henriques, J., Arleth, Lise, Lindorff-Larsen, Kresten & Skepo, M., 3 Aug 2018, In: Journal of Molecular Biology. 430, 16, SI, p. 2521-2539

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations

    Bottaro, S., Bussi, G., Kennedy, S. D., Turner, D. H. & Lindorff-Larsen, Kresten, 18 May 2018, In: Science Advances. 4, 5, 8 p., eaar8521.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Dynamic activation and regulation of the mitogen-activated protein kinase p38

    Kumar, G. S., Clarkson, M. W., Kunze, M. B. A., Granata, D., Wand, A. J., Lindorff-Larsen, Kresten, Page, R. & Peti, W., 1 May 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 18, p. 4655-4660 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A Combined Simulation and SAXS Study of the Dynamics of Lipid Nanodiscs

    Bengtsen, T., Holm-Janas, Viktor, Midtgaard, S. R., Arleth, Lise & Lindorff-Larsen, Kresten, 17 Feb 2018, In: Biophysical Journal. 114, 3, Supp. 1, p. 559A-559A 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

    Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, Leise, Olsen, Christian Adam, Arkin, I. T., Winther, Jakob R., Willemoës, Martin & Lindorff-Larsen, Kresten, 2018, In: Biochemistry. 57, 41, p. 5949-5956

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Biophysical experiments and biomolecular simulations: a perfect match?

    Bottaro, S. & Lindorff-Larsen, Kresten, 2018, In: Science. 361, 6400, p. 355-360 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  21. Published

    Cancer Mutations of the Tumor Suppressor SPOP Disrupt the Formation of Active, Phase-Separated Compartments

    Bouchard, J. J., Otero, J. H., Scott, D. C., Szulc, E., Martin, E. W., Sabri, N., Granata, D., Marzahn, M. R., Lindorff-Larsen, Kresten, Salvatella, X., Schulman, B. A. & Mittag, T., 2018, In: Molecular Cell. 72, 1, p. 19-36, e1-e8

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Editorial overview: Theory and simulation: Interpreting experimental data at the molecular level

    Best, R. B. & Lindorff-Larsen, Kresten, 2018, In: Current Opinion in Structural Biology. 49, p. iv-v 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  23. Published

    Enhancing coevolution-based contact prediction by imposing structural self-consistency of the contacts

    Kassem, M. M., Christoffersen, L. B., Cavalli, A. & Lindorff-Larsen, Kresten, 2018, In: Scientific Reports. 8, 11112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Frequency adaptive metadynamics for the calculation of rare-event kinetics

    Wang, Y., Valsson, O., Tiwary, P., Parrinello, M. & Lindorff-Larsen, Kresten, 2018, In: Journal of Chemical Physics. 149, 7, p. 1-7 072309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Gs protein peptidomimetics as allosteric modulators of the β2-adrenergic receptor

    Boyhus, L. E., Danielsen, Mia, Bengtson, N. S., Kunze, M. B. A., Kubiak, X., Sminia, T. J., Løper, J. H., Tran, P. T., Lindorff-Larsen, Kresten, Rasmussen, Søren Gøgsig Faarup, Mathiesen, Jesper M. & Pedersen, D. S., 2018, In: RSC Advances. 8, 4, p. 2219-2228 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    How well do force fields capture the strength of salt bridges in proteins?

    Ahmed, M. C. H., Papaleo, E. & Lindorff-Larsen, Kresten, 2018, In: PeerJ. 6, 17 p., 4967.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Molecular dynamics ensemble refinement of the heterogeneous native state of NCBD using chemical shifts and NOEs

    Papaleo, E., Camilloni, C., Teilum, Kaare, Vendruscolo, M. & Lindorff-Larsen, Kresten, 2018, In: PeerJ. 6, p. 1-24 e5125.

    Research output: Contribution to journal › Journal article › Research › peer-review

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