Kresten Lindorff-Larsen

Kresten Lindorff-Larsen

Professor

ORCID: 0000-0002-4750-6039

Publication year:
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176 - 200 out of 210Page size: 25
  1. 2012

  2. Protein folding kinetics and thermodynamics from atomistic simulation

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 44, p. 17845-17850 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Structure and dynamics of an unfolded protein examined by molecular dynamics simulation

    Lindorff-Larsen, Kresten, Trbovic, N., Maragakis, P., Piana, S. & Shaw, D. E., 2012, In: Journal of the American Chemical Society. 134, 8, p. 3787-3791 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Systematic validation of protein force fields against experimental data

    Lindorff-Larsen, Kresten, Maragakis, P., Piana, S., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 2012, In: P L o S One. 7, 2, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 2011

  6. Computational design and experimental testing of the fastest-folding ß-sheet protein

    Piana, S., Sarkar, K., Lindorff-Larsen, Kresten, Guo, M., Gruebele, M. & Shaw, D. E., 7 Jan 2011, In: Journal of Molecular Biology. 405, 1, p. 43-48 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. How fast-folding proteins fold

    Lindorff-Larsen, Kresten, Piana, S., Dror, R. O. & Shaw, D. E., 2011, In: Science (New York, N.Y.). 334, 6055, p. 517-20 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. How robust are protein folding simulations with respect to force field parameterization?

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2011, In: Biophysical Journal (2011). 100, 9, p. L47-L49

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. 2010

  10. Improved side-chain torsion potentials for the Amber ff99SB protein force field

    Lindorff-Larsen, Kresten, Piana, S., Palmo, K., Maragakis, P., Klepeis, J. L., Dror, R. O. & Shaw, D. E., Jun 2010, In: Proteins: Structure, Function, and Bioinformatics. 78, 8, p. 1950-8 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Atomic-level characterization of the structural dynamics of proteins

    Shaw, D. E., Maragakis, P., Lindorff-Larsen, Kresten, Piana, S., Dror, R. O., Eastwood, M. P., Bank, J. A., Jumper, J. M., Salmon, J. K., Shan, Y. & Wriggers, W., 2010, In: Science (New York, N.Y.). 330, 6002, p. 341-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Principles of conduction and hydrophobic gating in K+ channels

    Jensen, M. Ø., Borhani, D. W., Lindorff-Larsen, Kresten, Maragakis, P., Jogini, V., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 13, p. 5833-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. 2009

  14. Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations

    Wriggers, W., Stafford, K. A., Shan, Y., Piana, S., Maragakis, P., Lindorff-Larsen, Kresten, Miller, P. J., Gullingsrud, J., Rendleman, C. A., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 1 Oct 2009, In: Journal of Chemical Theory and Computation. 5, 10, p. 2595-2605 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Long-timescale molecular dynamics simulations of protein structure and function

    Klepeis, J. L., Lindorff-Larsen, Kresten, Dror, R. O. & Shaw, D. E., 2009, In: Current Opinion in Structural Biology. 19, 2, p. 120-7 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Millisecond-scale molecular dynamics simulations on Anton

    Shaw, D. E., Dror, R. O., Salmon, J. K., Grossman, J. P., Mackenzie, K. M., Bank, J. A., Young, C., Deneroff, M. M., Batson, B., Bowers, K. J., Chow, E., Eastwood, M. P., Ierardi, D., Klepeis, J. L., Kuskin, J., Larson, R. H., Lindorff-Larsen, K., Maragakis, P., Moraes, M. A., Piana, S. & 2 others, Shan, Y. & Towles, B., 2009, Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis. Association for Computing Machinery, 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  17. Published

    Similarity measures for protein ensembles

    Lindorff-Larsen, Kresten & Ferkinghoff-Borg, J., 2009, In: PLoS ONE. 4, 1, 13 p., e4203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. 2008
  19. Published

    Experimental parameterization of an energy function for the simulation of unfolded proteins

    Nørgaard, A. B., Ferkinghoff-Borg, J. & Lindorff-Larsen, Kresten, 2008, In: Biophysical Journal. 94, 1, p. 182-192

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins

    Maragakis, P., Lindorff-Larsen, Kresten, Eastwood, M. P., Dror, R. O., Klepeis, J. L., Arkin, I. T., Jensen, M. Ø., Xu, H., Trbovic, N., Friesner, R. A., Iii, A. G. P. & Shaw, D. E., 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 19, p. 6155-6158 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. 2007

  22. BPPred: a Web-based computational tool for predicting biophysical parameters of proteins

    Geierhaas, C. D., Nickson, A. A., Lindorff-Larsen, Kresten, Clarke, J. & Vendruscolo, M., 2007, In: Protein Science. 16, 1, p. 125-34 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Detection of initiation sites in protein folding of the four helix bundle ACBP by chemical shift analysis.

    Modig, K., Jürgensen, V. W., Lindorff-Larsen, Kresten, Fieber, W., Bohr, H. G. & Poulsen, F. M., 2007, In: FEBS Letters. 581, 25, p. 4965-4971 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. 2006
  25. Published

    Characterization of the residual structure in the unfolded state of the Delta 131 Delta fragment of staphylococcal nuclease

    Francis, C. J., Lindorff-Larsen, Kresten, Best, R. B. & Bendruscolo, M., 2006, In: Proteins - Structure Function and Bioinformatics. 65, 1, p. 145-52

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Conformational fluctuations affect protein alignment in dilute liquid crystal media.

    Louhivuori, M., Otten, R., Lindorff-Larsen, Kresten & Annila, A., 2006, In: Journal of the American Chemical Society. 128, 13, p. 4371-4376 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Relation between native ensembles and experimental structures of proteins.

    Best, R. B., Lindorff-Larsen, Kresten, DePristo, M. A. & VEndruscolo, M., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 29, p. 10901-6

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Structure of the regulatory apparatus of a calcium-dependent protein kinase (CDPK): a novel mode of calmodulin-target recognition

    Chandran, V., Stollar, E. J., Lindorff-Larsen, Kresten, Harper, J. F., Chazin, W. J., Dobson, C. M., Luisi, B. F. & Christodoulou, J., 2006, In: Journal of Molecular Biology. 357, 2, p. 400-10 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. 2005
  30. Published

    Formation of Native and Non-native Interactions in Ensembles of Denatured ACBP Molecules from Paramagnetic Relaxation Enhancement Studies

    Kristjansdottir, S., Lindorff-Larsen, Kresten, Fieber, W., Dobson, C. M., Vendruscolo, M. & Poulsen, F. M., 2005, In: Journal of Molecular Biology. 347, 5, p. 1053-1062

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Interpreting Dynamically-Averaged Scalar Couplings in Proteins

    Lindorff-Larsen, Kresten, Best, R. B. & Vendruscolo, M., 2005, In: Journal of Biomolecular NMR. 32, 4, p. 273-280

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Mapping Long-Range Interactions in a-Synuclein using Spin-Label NMR and Ensemble Molecular Dynamics Simulations

    Dedmon, M. M., Lindorff-Larsen, Kresten, Christodoulou, J., Vendruscolo, M. & Dobson, C. M., 2005, In: Journal of the American Chemical Society. 127, 2, p. 476-477

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Protein folding and the organization of the protein topology universe

    Lindorff-Larsen, Kresten, Røgen, P., Paci, E., Vendruscolo, M. & Dobson, C. M., 2005, In: TIBS -Trends in Biochemical Sciences. Regular ed.. 30, 1, p. 13-19

    Research output: Contribution to journal › Journal article › Research

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