Xu Peng

Xu Peng

Professor

ORCID: 0000-0003-3926-7514

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  1. Published

    Genome editing in archaeal viruses and endogenous viral protein purification

    Alfastsen, L., Peng, Xu & Bhoobalan, Yuvaraj, 2021, In: STAR Protocols. 2, 4, 27 p., 100791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Genomics, Transcriptomics, and Proteomics of SSV1 and Related Fusellovirus: A Minireview

    Aulitto, M., Martinez Alvarez, Laura, Fusco, S., She, Q., Bartolucci, S., Peng, Xu & Contursi, P., 2022, In: Viruses. 14, 10, 18 p., 2082.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    A Comparative Analysis of Weizmannia coagulans Genomes Unravels the Genetic Potential for Biotechnological Applications

    Aulitto, M., Martinez Alvarez, Laura, Fiorentino, G., Limauro, D., Peng, Xu & Contursi, P., 2022, In: International Journal of Molecular Sciences . 23, 6, 23 p., 3135.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1

    Basta, T., Smyth, J., Forterre, P., Prangishvili, D. & Peng, Xu, 2009, In: Molecular Microbiology. 71, 1, p. 23-34 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    AFV1, a novel virus infecting hyperthermophilic archaea of the genus Acidianus.

    Bettstetter, M., Peng, Xu & Garrett RA, Prangishvili D., G. R. P. D., 2003, In: Virology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    AFV1 a novel virus infecting hyperthermophilic archaea of the genus Acidianus

    Bettstetter, M., Peng, Xu, Garrett, Roger Antony & Prangishvili, D., 2003, In: Virology. 315, p. 69-79

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Regulatory sequence-based discovery of anti-defense genes in archaeal viruses

    Bhoobalan, Yuvaraj, Xu, Shuanshuan, Martinez Alvarez, Laura, Karamycheva, S., Makarova, K. S., Koonin, E. V. & Peng, Xu, 2024, In: Nature Communications. 15, 1, 13 p., 3699.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Inhibition of Type III CRISPR-Cas Immunity by an Archaeal Virus-Encoded Anti-CRISPR Protein

    Bhoobalan, Yuvaraj, Johansen, T. B., Di Cianni, N. & Peng, Xu, 2019, In: Cell. 179, 2, p. 448-458, e1-e11

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Viruses in acidic geothermal environments of the Kamchatka Peninsula

    Bize, A., Peng, Xu, Prokofeva, M., Maclellan, K., Lucas, S., Forterre, P., Garrett, Roger Antony, Bonch-Osmolovskaya, E. A. & Prangishvili, D., 2008, In: Research in Microbiology. 159, 5, p. 358-66 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A Unified Resource for Tracking Anti-CRISPR Names

    Bondy-Denomy, J., Davidson, A. R., Doudna, J. A., Fineran, P. C., Maxwell, K. L., Moineau, S., Peng, Xu, Sontheimer, E. J. & Wiedenheft, B., 2018, In: CRISPR Journal. 1, 5, p. 304-305

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  11. Published

    Sulfolobus genomes: mechanisms of rearrangement and change

    Brügger, K., Peng, Xu & Garrett, Roger Antony, 2006, Archaea: Evolution, physiology and Molecular Biolog.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  12. Published

    Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2

    Charlebois, R. L., Singh, R. K., Chan-Weiher, CC-Y., Allard, G., Chow, C., Confalonieri, F., Curtis, B., Duguet, M., Erauso, G., Faguy, D., Gaasterland, T., Garrett, R. A., Gordon, P., Jeffries, A. C., Kozera, C., Kushwaha, N., Lafleur, E., Medina, N., Peng, X., Penny, S. L. & 8 others, She, Q., St. Jean, A., van der Oost, J., Young, F., Zivanovic, Y., Doolittle, W. F., Ragan, M. A. & Sensen, C. W., 2000, In: Genome. 43, p. 116-136

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Four additional natural 7-deazaguanine derivatives in phages and how to make them

    Cui, L., Balamkundu, S., Liu, C. F., Ye, H., Hourihan, J., Rausch, A., Hauß, C., Nilsson, E., Hoetzinger, M., Holmfeldt, K., Zhang, W., Martinez-Alvarez, L., Peng, X., Tremblay, D., Moinau, S., Solonenko, N., Sullivan, M. B., Lee, Y. J., Mulholland, A., Weigele, P. R. & 3 others, de Crécy-Lagard, V., Dedon, P. C. & Hutinet, G., 2023, In: Nucleic Acids Research. 51, 17, p. 9214-9226 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus

    Deng, Ling, Garrett, Roger Antony, Shah, S. A., Peng, Xu & She, Q., 2013, In: Molecular Microbiology. 87, 5, p. 1088-1099 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Unveiling cell surface and type IV secretion proteins responsible for archaeal rudivirus entry

    Deng, Ling, He, F., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Guo, Y. & Peng, Xu, 2014, In: Journal of Virology. 88, 17, p. 10264-10268 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus

    Deng, Ling, Kenchappa, C. S., Peng, Xu, She, Q. & Garrett, Roger Antony, 2012, In: Nucleic Acids Research. 40, 6, p. 2470-2480 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches

    Elcheninov, A. G., Menzel, P., Gudbergsdottir, S. R., Slesarev, A. I., Kadnikov, V. V., Krogh, Anders, Bonch-Osmolovskaya, E. A., Peng, Xu & Kublanov, I. V., 2 Nov 2017, In: Frontiers in Microbiology. 8, 11 p., 2140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Discovery and Characterization of a Novel Thermostable β-Amino Acid Transaminase from a Meiothermus Strain Isolated in an Icelandic Hot Spring

    Ferrandi, E. E., Bassanini, I., Sechi, B., Vanoni, M., Tessaro, D., Gudbergsdóttir, S. R., Riva, S., Peng, Xu & Monti, D., 2020, In: Biotechnology Journal. 15, 11, 9 p., 2000125.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries

    Ferrandi, E. E., Sayer, C., Isupov, M. N., Annovazzi, C., Marchesi, C., Iacobone, G., Peng, Xu, Bonch-Osmolovskaya, E., Wohlgemuth, R., Littlechild, J. A. & Monti, D., 2015, In: F E B S Journal. 282, 15, p. 2879-2894 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Novel thermostable amine transferases from hot spring metagenomes

    Ferrandi, E. E., Previdi, A., Bassanini, I., Riva, S., Peng, Xu & Monti, D., Jun 2017, In: Applied Microbiology and Biotechnology. 101, 12, p. 4963-4979 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Virulence, Resistance, and Genomic Fingerprint Traits of Vibrio cholerae Isolated from 12 Species of Aquatic Products in Shanghai, China

    Fu, H., Yu, P., Liang, W., Kan, B., Peng, Xu & Chen, L., 2020, In: Microbial Drug Resistance. 26, 12, p. 1526-1539 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Archaeal Viruses and Their Interactions with CRISPR-Cas Systems

    Garrett, Roger Antony, Shah, S. A., Martinez Alvarez, Laura & Peng, Xu, 2020, Biocommunication of Phages. 1 ed. Springer, p. 199-220 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles

    Garrett, Roger Antony, Prangishvili, D., Shah, S. A., Reuter, M., Stetter, K. O. & Peng, Xu, 1 Nov 2010, In: Environmental Microbiology. 12, 11, p. 2918-30 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    CRISPR-Cas adaptive immune systems of the sulfolobales: unravelling their complexity and diversity

    Garrett, Roger Antony, Shah, S. A., Erdmann, S., Guannan, L., Mousaei, M., León Sobrino, C., Peng, W., Islin, S. R., Deng, Ling, Vestergaard, G., Peng, Xu & She, Q., 2015, In: Life. 5, 1, p. 783-817 35 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Isolation and characterization of the first Xylanolytic hyperthermophilic euryarchaeon Thermococcus sp strain 2319x1 and its unusual multidomain glycosidase

    Gavrilov, S. N., Stracke, C., Jensen, K., Menzel, P., Kallnik, V., Slesarev, A., Sokolova, T., Zayulina, K., Bräsen, C., Bonch-Osmolovskaya, E. A., Peng, Xu, Kublanov, I. V. & Siebers, B., 2016, In: Frontiers in Microbiology. 7, 17 p., 552.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1

    Gong, L., Yu, P., Zheng, H., Gu, W., He, W., Tang, Y., Wang, Y., Dong, Y., Peng, Xu, She, Q., Xie, L. & Chen, L., 2019, In: Molecular Genetics and Genomics. 294, 2, p. 417-430

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Growth factors and gene expression in cultured hepatocytes

    Grunnet, N., Peng, Xu & Tygstrup, N., 1999, In: Jounal of Hepatology. 30, p. 117-122

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Functional characterization of a conserved archaeal viral operon revealing single-stranded DNA binding, annealing and nuclease activities

    Guo, Y., Kragelund, Birthe Brandt, White, M. F. & Peng, Xu, 2015, In: Journal of Molecular Biology. 427, 12, p. 2179-2191 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Familial relationships in hyperthermo- and acidophilic archaeal viruses

    Happonen, L. J., Redder, P., Peng, Xu, Reigstad, L. J., Prangishvili, D. & Butcher, S. J., 1 May 2010, In: Journal of Virology. 84, 9, p. 4747-54 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    First experimental evidence for the presence of a CRISPR toxin in Sulfolobus

    He, F., Chen, L. & Peng, Xu, 2014, In: Journal of Molecular Biology. 426, 22, p. 3683-3688 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    CRISPR-Cas type I-A Cascade complex couples viral infection surveillance to host transcriptional regulation in the dependence of Csa3b

    He, F., Vestergaard, G. A., Peng, W., She, Q. & Peng, Xu, 2017, In: Nucleic Acids Research. 45, 4, p. 1902-1913 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity

    He, F., Bhoobalan, Yuvaraj, Van, L. B., Kjeldsen, A. L., Dedola, M., Makarova, K. S., Koonin, E. V., Brodersen, D. E. & Peng, Xu, 2018, In: Nature Microbiology. 3, 4, p. 461-469 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Viral Diversity in Hot Springs of Pozzuoli, Italy, and Characterization of a Unique Archaeal Virus, Acidianus Bottle-Shaped Virus, from a New Family, the Ampullaviridae

    Häring, M., Rachel, R., Peng, Xu, Garrett, Roger Antony & Prangishvili, D., 2005, In: Journal of Virology. 79, 15, p. 9904 - 9911

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Morphology and genome organisation of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: A novel virus family, the Globuloviridae

    Häring , M., Peng, Xu & Brugger K., Rachel R., Stetter K.O., Garrett R.A.,Prangishvili D., B. K. ,. R. R. ,. S. K. O. ,. G. R. A. ,. D., 2004, In: Virology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs

    Islin, S. R., Menzel, P., Krogh, Anders, Young, M. & Peng, Xu, 2016, In: Environmental Microbiology. 18, 3, p. 863-874 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Metagenomic analyses reveal phylogenetic diversity of carboxypeptidase gene sequences in activated sludge of a wastewater treatment plant in Shanghai, China

    Jin, H., Li, B., Peng, Xu & Chen, L., 2014, In: Annals of Microbiology. 64, 2, p. 689-697 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

    Krupovic, M., Turner, D., Morozova, V., Dyall-Smith, M., Oksanen, H. M., Edwards, R., Dutilh, B. E., Lehman, S. M., Reyes, A., Baquero, D. P., Sullivan, M. B., Uchiyama, J., Nakavuma, J., Barylski, J., Young, M. J., Du, S., Alfenas-Zerbini, P., Kushkina, A., Kropinski, A. M., Kurtböke, I. & 29 others, Brister, J. R., Lood, C., Sarkar, B. L., Yigang, T., Liu, Y., Huang, L., Wittmann, J., Chanishvili, N., van Zyl, L. J., Rumnieks, J., Mochizuki, T., Jalasvuori, M., Aziz, R. K., Łobocka, M., Stedman, K. M., Shkoporov, A. N., Gillis, A., Peng, Xu, Enault, F., Knezevic, P., Lavigne, R., Rhee, S. K., Cvirkaite-Krupovic, V., Moraru, C., Moreno Switt, A. I., Poranen, M. M., Millard, A., Prangishvili, D. & Adriaenssens, E. M., 2021, In: Archives of Virology. 166, 11, p. 3239-3244 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A clade of RHH proteins ubiquitous in Sulfolobales and their viruses regulates cell cycle progression

    Li, X., Lozano-Madueno, C., Martinez Alvarez, Laura & Peng, Xu, 2023, In: Nucleic acids symposium series. 51, 4, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    DNA targeting by subtype I-D CRISPR-Cas shows type I and type III features

    Lin, Jinzhong, Fuglsang, Anders, Kjeldsen, A. L., Sun, K., Bhoobalan, Yuvaraj & Peng, Xu, 2020, In: Nucleic Acids Research. 48, 18, p. 10470-10478 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Molecular basis for inhibition of type III-B CRISPR-Cas by an archaeal viral anti-CRISPR protein

    Lin, Jinzhong, Alfastsen, L., Bhoobalan, Yuvaraj & Peng, Xu, 2023, In: Cell Host and Microbe. 31, 11, p. 1837-1849.e5 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    DNA Motifs and an Accessory CRISPR Factor Determine Cas1 Binding and Integration Activity in Sulfolobus islandicus

    Liu, T., Xu, Y., Wang, X., Ye, Q., Liu, Z., Zhang, Z., Liu, J., Yang, Y., Peng, Xu & Peng, N., 2022, In: International Journal of Molecular Sciences . 23, 17, 15 p., 10178.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Structural basis for inhibition of an archaeal CRISPR–Cas type I-D large subunit by an anti-CRISPR protein

    Manav, M. C., Van, L. B., Lin, Jinzhong, Fuglsang, Anders, Peng, Xu & Brodersen, D. E., 2020, In: Nature Communications. 11, 10 p., 5993.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Multiple consecutive initiation of replication producing novel brush-like intermediates at the termini of linear viral dsDNA genomes with hairpin ends.

    Martinez Alvarez, Laura, Bell, S. D. & Peng, Xu, 2016, In: Nucleic Acids Research. 44, 18, p. 8799-8809 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2

    Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, Jul 2017, In: Journal of Virology. 91, 13, 12 p., e00486-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Erratum: Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2 [Journal of Virology, 91, 13, (2017), (e00486-17)] DOI:10.1128/JVI.00486-17

    Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, 1 Apr 2018, In: Journal of Virology. 92, 7, e01991-17.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  46. Published

    Anti-CRISPR-Based and CRISPR-Based Genome Editing of Sulfolobus islandicus Rod-Shaped Virus 2

    Mayo-Muñoz, D., He, F., Jørgensen, J. B., Madsen, P. K., Bhoobalan, Yuvaraj & Peng, Xu, 2018, In: Viruses. 10, 12, p. 1-17 695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Comparative metagenomics of eight geographically remote terrestrial hot springs

    Menzel, P., Islin, S. R., Rike, A. G., Lin, L., Zhang, Q., Contursi, P., Moracci, M., Kristjansson, J. K., Bolduc, B., Gavrilov, S., Ravin, N., Mardanov, A., Bonch-Osmolovskaya, E., Young, M., Krogh, Anders & Peng, Xu, 2015, In: Microbial Ecology. 70, 2, p. 411-424 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication

    Oke, M., Kerou, M., Liu, H., Peng, Xu, Garrett, Roger Antony, Prangishvili, D., Naismith, J. H. & White, M. F., 2011, In: Journal of Virology. 85, 2, p. 925-31 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    The Scottish Structural Proteomics Facility: targets, methods and outputs

    Oke, M., Carter, L. G., Johnson, K. A., Liu, H., McMahon, S. A., Yan, X., Kerou, M., Weikart, N. D., Kadi, N., Sheikh, M. A., Schmelz, S., Dorward, M., Zawadzki, M., Cozens, C., Falconer, H., Powers, H., Overton, I. M., van Niekerk, C. A. J., Peng, X., Patel, P. & 11 others, Garrett, Roger Antony, Prangishvili, D., Botting, C. H., Coote, P. J., Dryden, D. T. F., Barton, G. J., Schwarz-Linek, U., Challis, G. L., Taylor, G. L., White, M. F. & Naismith, J. H., 1 Jun 2010, In: Journal of Structural and Functional Genomics. 11, 2, p. 167-80 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells

    Okutan, E., Deng, Ling, Mirlashari, S., Uldahl, K., Halim, M., Liu, C., Garrett, Roger Antony, She, Q. & Peng, Xu, 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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