Jakob R. Winther

Jakob R. Winther

Professor

ORCID: 0000-0001-6995-9154

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  1. Published

    Shining light on split fluorescent protein fitness landscapes using peptide array-based deep substitutional scanning

    ANTONESCU, O., Johansson, Kristoffer Enøe & Winther, Jakob R., 30 Jun 2019.

    Research output: Contribution to conference › Poster › Research › peer-review

  2. Published

    Evolution i overhalingsbanen

    Abildgaard, A. B., Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Winther, Jakob R., 15 Dec 2017, In: Weekendavisen. 2017, 50, p. Ideer: 13 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  3. Published

    Molekylære stavefejl

    Abildgaard, A. B., Winther, Jakob R., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 28 Jan 2021, In: Weekendavisen, Ideer.

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  4. Published

    VM i molekylære puslespil

    Abildgaard, A. B., Winther, Jakob R., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 16 Apr 2021, In: Weekendavisen: Ideer. 15, p. 11

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  5. Published

    Charge Engineering Reveals the Roles of Ionizable Side Chains in Electrospray Ionization Mass Spectrometry

    Abramsson, M. L., Sahin, C., Hopper, J. T. S., Branca, R. M. M., Danielsson, J., Xu, M., Chandler, S. A., Österlund, N., Ilag, L. L., Leppert, A., Costeira-Paulo, J., Lang, L., Teilum, K., Laganowsky, A., Benesch, J. L. P., Oliveberg, M., Robinson, C. V., Marklund, E. G., Allison, T. M., Winther, J. R. & 1 others, Landreh, M., 2021, In: JACS Au. 1, 12, p. 2385-2393 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Substitutional landscape of a split fluorescent protein fragment using high-density peptide microarrays

    Antonescu, O. N., Rasmussen, A., Damm, N. A. M., Heidemann, Ditte Fogh, Popov, R., Nesterov-Mueller, A., Johansson, Kristoffer Enøe & Winther, Jakob R., 2021, In: PLoS ONE. 16, 2, 17 p., e0241461.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Comprehensive mapping of GFP structure-function relationship using high-density peptide arrays

    Antonescu, O., Johansson, Kristoffer Enøe & Winther, Jakob R., 10 Jul 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  8. Published

    Purification, co-crystallization and preliminary X-ray analysis of the natural aspartic proteinase inhibitor I(A)3 complexed with saccharopepsin from Saccharomyces cerevisiae

    Badasso, M. O., Read, J. A., Dhanaraj, V., Cooper, J. B., Wood, S. P., Blundell, T. L., Dreyer, T. & Winther, Jakob R., 2000, In: Acta Crystallographica Section D: Biological Crystallography.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Protein oxidation: prime suspect found 'not guilty'

    Bader, M., Winther, Jakob R. & Bardwell, J. C. A., 1999, In: Nature Cell Biology. 1, 3, p. E57-E58

    Research output: Contribution to journal › Comment/debate › Communication

  10. Published

    Mutational replacement of methionine by arginine in the S′1 substrate binding site of yeast carboxypeptidase

    Bech, L. M., Nielsen, J., Winther, Jakob R., Kielland-Brandt, M. C. & Breddam, K., 1986, In: Carlsberg Research Communications. 51, 6, p. 459-465 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris

    Behrendt, L., Nielsen, J. L., Sørensen, Søren Johannes, Larkum, A. W. D., Winther, Jakob R. & Kühl, Michael, 2014, In: Applied and Environmental Microbiology. 80, 10, p. 3244-3249 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Improving folding properties of computationally designed proteins

    Bjerre, B., Nissen, J., Madsen, M., Kamarauskaite, J., Norrild, R. K., Holm, Peter Christoffer, Nordentoft, M. K., O'Shea, Charlotte, Willemoës, Martin, Johansson, Kristoffer Enøe & Winther, Jakob R., 13 Dec 2019, In: Protein Engineering Design and Selection (Print). 32, 3, p. 145-151 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Mechanistic insight provided by glutaredoxin within a fusion to redox-sensitive yellow fluorescent protein

    Björnberg, O., Østergaard, H. & Winther, Jakob R., 2006, In: Biochemistry. 45, 7, p. 2362-71 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Measuring intracellular redox conditions using GFP-based sensors

    Björnberg, O., Ostergaard, H. & Winther, Jakob R., 2006, In: Antioxidants & Redox Signaling. 8, 3-4, p. 354-61 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The functional role of the autolysis loop in the regulation of factor X upon hemostatic response

    Bonde, A. C., Lund, J., Hansen, J. J., Winther, Jakob R., Nielsen, P. F., Zahn, S., Tiainen, P., Olsen, O. H., Petersen, H. H. & Rose Bjelke, J., 2022, In: Journal of Thrombosis and Haemostasis. 20, 3, p. 589-599 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. A High-Affinity Inhibitor of Yeast Carboxypeptidase Y Is Encoded by TFS1 and Shows Homology to a Family of Lipid Binding Proteins

    Bruun, A. W., Svendsen, I., Sørensen, S. O., Kielland-Brandt, M. C. & Winther, Jakob R., 1998, In: Biochemistry. 37, 10, p. 3351-3357 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Non-invasive in-cell determination of free cytosolic [NAD+]/[NADH] ratios using hyperpolarized glucose show large variations in metabolic phenotypes

    Christensen, Caspar Elo, Karlsson, M., Winther, Jakob R., Jensen, P. R. & Lerche, M. H., 2014, In: The Journal of Biological Chemistry. 289, 4, p. 2344-2352 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    The human selenoprotein VCP-interacting membrane protein (VIMP) is non-globular and harbors a reductase function in an intrinsically disordered region

    Christensen, L. C., Jensen, N. W., Lages Lino Vala, A., Kamarauskaite, J., Johansson, L. C., Winther, Jakob R., Hofmann, K., Teilum, Kaare & Ellgaard, Lars, 2012, In: Journal of Biological Chemistry. 287, 31, p. 26388-26399 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Fluorometric polyethyleneglycol-peptide hybrid substrates for quantitative assay of protein disulfide isomerase

    Christiansen, C., Hilaire, P. M. S. & Winther, Jakob R., 2004, In: Analytical Biochemistry. 333, 1, p. 148-155 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Flash properties of Gaussia luciferase are the result of covalent inhibition after a limited number of cycles

    Dijkema, F. M., Nordentoft, M. K., Didriksen, A. K., Corneliussen, A. S., Willemoës, Martin & Winther, Jakob R., 2021, In: Protein Science. 30, 3, p. 638-649 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Why is DsbA such an oxidizing disulfide catalyst?

    Grauschopf, U., Winther, Jakob R., Korber, P., Zander, T., Dallinger, P. & Bardwell, J. C., 1995, In: Cell. 83, 6, p. 947-55 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Pulmonary effects of nanofibrillated celluloses in mice suggest that carboxylation lowers the inflammatory and acute phase responses

    Hadrup, N., Knudsen, K. B., Berthing, T., Wolff, H., Bengtson, S., Kofoed, Christian, Espersen, R., Højgaard, C., Winther, Jakob R., Willemoës, Martin, Wedin, I., Nuopponen, M., Alenius, H., Norppa, H., Wallin, H. & Vogel, U., 2019, In: Environmental Toxicology and Pharmacology. 66, p. 116-125 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Mutational analysis of divalent metal ion binding in the active site of class II α-mannosidase from Sulfolobus solfataricus

    Hansen, D., Webb, H., Nielsen, J. W., Harris, P., Winther, Jakob R. & Willemoës, Martin, 2015, In: Biochemistry. 54, 11, p. 2032-2039 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Engineering Bifidobacterium longum Endo-α-N-acetylgalactosaminidase for Neu5Acα2-3Ga1β1-3Ga1NAc reactivity on Fetuin

    Hansen, D. K., Hansen, A. L., Koivisto, J. M., Shuoker, B., Abou Hachem, M., Winther, Jakob R. & Willemoës, Martin, 2022, In: Archives of Biochemistry and Biophysics. 725, 8 p., 109280.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Steady state kinetic analysis of O-linked GalNAc glycan release catalyzed by endo-α-N-acetylgalactosaminidase

    Hansen, D. K., Winther, Jakob R. & Willemoës, Martin, 2019, In: Carbohydrate Research. 480, p. 54-60

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Catalytic site interactions in yeast OMP synthase

    Hansen, M. R., Barr, E. W., Jensen, K. F., Willemoës, Martin, Grubmeyer, C. & Winther, Jakob R., 2014, In: Archives of Biochemistry and Biophysics. 542, p. 28-38 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Increasing the reactivity of an artificial dithiol-disulfide pair through modification of the electrostatic milieu

    Hansen, R. E., Østergaard, H. & Winther, Jakob R., 2005, In: Biochemistry. 44, 15, p. 5899-906 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Quantification of protein thiols and dithiols in the picomolar range using sodium borohydride and 4,4'-dithiodipyridine.

    Hansen, R. E., Østergaard, H., Nørgaard, P. & Winther, Jakob R., 2007, In: Analytical Biochemistry. 363, 1, p. 77-82 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Quantifying the global cellular thiol-disulfide status

    Hansen, R. E., Roth, D. & Winther, Jakob R., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 2, p. 422-427 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    An introduction to methods for analyzing thiols and disulfides: Reactions, reagents, and practical considerations

    Hansen, R. E. & Winther, Jakob R., 2009, In: Analytical Biochemistry. 394, 2, p. 147-58 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Increasing the reactivity of an artificial dithiol-bisulfide pair through modification of the electrostatic milieu

    Hansen, R. E., Østergaard, H. & Winther, Jakob R., 2005, In: Biochemistry.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Quantifying changes in the cellular thiol-disulfide status during differentiation of B cells into antibody-secreting plasma cells

    Hansen, R. R. E., Otsu, M., Braakman, I. & Winther, Jakob R., 2013, In: International Journal of Cell Biology. 2013, 10 p., 898563.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Charge Interactions in a Highly Charge-Depleted Protein

    Hervø-Hansen, S., Højgaard, C., Johansson, Kristoffer Enøe, Wang, Y., Wahni, K., Young, D., Messens, J., Teilum, Kaare, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: Journal of the American Chemical Society. 143, 6, p. 2500-2508 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Editorial overview: A perspective on protein evolution

    Hoecker, B. & Winther, Jakob R., 2018, In: Current Opinion in Structural Biology. 48, p. viii-ix 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  35. Published

    Competition between folding and glycosylation in the endoplasmic reticulum

    Holst, B., Bruun, A. W., Kielland-Brandt, M. & Winther, Jakob R., 1996, In: E M B O Journal. 15, 14, p. 3538-46 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Active site mutations in yeast protein disulfide isomerase cause dithiothreitol sensitivity and a reduced rate of protein folding in the endoplasmic reticulum

    Holst, B., Tachibana, C. & Winther, Jakob R., 1997, In: Journal of Cell Biology. 138, 6, p. 1229-1238 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Structure of glutaredoxin Grx1p C30S mutant from yeast.

    Håkansson, K. O. & Winther, Jakob R., 2007, In: Acta Crystallographica. Section D: Biological Crystallography. 63, Pt 3, p. 288-94 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Crystallization of mutant forms of glutaredoxin Grx1p from yeast

    Håkansson, K. O., Østergaard, H. & Winther, Jakob R., 2006, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 62, 9, p. 920-922

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Can a Charged Surfactant Unfold an Uncharged Protein?

    Højgaard, C., Sørensen, H. V., Pedersen, J. S., Winther, Jakob R. & Otzen, D. E., 2018, In: Biophysical Journal. 115, 11, p. 2081-2086 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A soluble, folded protein without charged amino acid residues

    Højgaard, C., Kofoed, Christian, Espersen, R., Johansson, Kristoffer Enøe, Villa, M., Willemoës, Martin, Lindorff-Larsen, Kresten, Teilum, Kaare & Winther, Jakob R., 2016, In: Biochemistry. 55, 28, p. 3949–3956 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Nanofibrillated cellulose causes acute pulmonary inflammation that subsides within a month

    Ilves, M., Vilske, S., Aimonen, K., Lindberg, H. K., Pesonen, S., Wedin, I., Nuopponen, M., Vanhala, E., Højgaard, C., Winther, Jakob R., Willemoës, Martin, Vogel, U., Wolff, H., Norppa, H., Savolainen, K. & Alenius, H., 2018, In: Nanotoxicology. 12, 7, p. 729-746 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Thiol-Disulfide Exchange between Glutaredoxin and Glutathione

    Iversen, R., Andersen, P. A., Jensen, K. S., Winther, Jakob R. & Sigurskjold, B. W., 2010, In: Biochemistry. 49, 4, p. 810-820 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    In Silico prediction of mutant HIV-1 proteases cleaving a target sequence

    Jensen, Jan Halborg, Willemoës, Martin, Winther, Jakob R. & De Vico, L., 2014, In: P L o S One. 9, 5, 11 p., 5.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Millisecond dynamics in glutaredoxin during catalytic turnover is dependent on substrate binding and absent in the resting states

    Jensen, K. S., Winther, Jakob R. & Teilum, Kaare, 2011, In: Journal of the American Chemical Society. 133, 9, p. 3034-42 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The pKa value and accessibility of cysteine residues are key determinants for protein substrate discrimination by glutaredoxin

    Jensen, K. S., Pedersen, J. T., Winther, Jakob R. & Teilum, Kaare, 2014, In: Biochemistry. 53, 15, p. 2533-2540 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Kinetic and Thermodynamic Aspects of Cellular Thiol-Disulfide Redox Regulation

    Jensen, K. S., Hansen, R. E. & Winther, Jakob R., 2009, In: Antioxidants & Redox Signaling. 11, 5, p. 1047-1058

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Global analysis of multi-mutants to improve protein function

    Johansson, Kristoffer Enøe, Lindorff-Larsen, Kresten & Winther, Jakob R., 2023, In: Journal of Molecular Biology. 435, 8, 15 p., 168034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Protein evolution: Hacking an enzyme

    Johansson, Kristoffer Enøe & Winther, Jakob R., 2018, In: Nature Chemical Biology. 14, 3, p. 202-204 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  49. Published

    Computational redesign of thioredoxin is hypersensitive towards minor conformational changes in the backbone template

    Johansson, Kristoffer Enøe, Johansen, Nicolai Tidemand, Christensen, S., Horowitz, S., Bardwell, J. C. A., Olsen, Johan Gotthardt, Willemoës, Martin, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J., Hamelryck, Thomas Wim & Winther, Jakob R., 2016, In: Journal of Molecular Biology. 428, 21, p. 4361-4377 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Ligand recognition and domain structure of Vps10p, a vacuolar protein sorting receptor in Saccharomyces cerevisiae

    Jørgensen, M. U., Emr, S. D. & Winther, Jakob R., 1999, In: European Journal of Biochemistry. 260, 2, p. 461-469 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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