Jakob R. Winther

Jakob R. Winther

Professor

ORCID: 0000-0001-6995-9154

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  1. Published

    In Silico prediction of mutant HIV-1 proteases cleaving a target sequence

    Jensen, Jan Halborg, Willemoës, Martin, Winther, Jakob R. & De Vico, L., 2014, In: P L o S One. 9, 5, 11 p., 5.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. A High-Affinity Inhibitor of Yeast Carboxypeptidase Y Is Encoded by TFS1 and Shows Homology to a Family of Lipid Binding Proteins

    Bruun, A. W., Svendsen, I., Sørensen, S. O., Kielland-Brandt, M. C. & Winther, Jakob R., 1998, In: Biochemistry. 37, 10, p. 3351-3357 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

    Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, Leise, Olsen, Christian Adam, Arkin, I. T., Winther, Jakob R., Willemoës, Martin & Lindorff-Larsen, Kresten, 2018, In: Biochemistry. 57, 41, p. 5949-5956

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A fluorescent probe which allows highly specific thiol labeling at low pH

    Nielsen, J. W., Jensen, K. S., Hansen, R. R. E., Gotfredsen, C. H. & Winther, Jakob R., 2012, In: Analytical Biochemistry. 421, 1, p. 115-120 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A soluble, folded protein without charged amino acid residues

    Højgaard, C., Kofoed, Christian, Espersen, R., Johansson, Kristoffer Enøe, Villa, M., Willemoës, Martin, Lindorff-Larsen, Kresten, Teilum, Kaare & Winther, Jakob R., 2016, In: Biochemistry. 55, 28, p. 3949–3956 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Active site mutations in yeast protein disulfide isomerase cause dithiothreitol sensitivity and a reduced rate of protein folding in the endoplasmic reticulum

    Holst, B., Tachibana, C. & Winther, Jakob R., 1997, In: Journal of Cell Biology. 138, 6, p. 1229-1238 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Active-site residues of procarboxypeptidase Y are accessible to chemical modification

    Sørensen, S. O. & Winther, Jakob R., 1994, In: BBA General Subjects. 1205, 2, p. 289-93 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    An introduction to methods for analyzing thiols and disulfides: Reactions, reagents, and practical considerations

    Hansen, R. E. & Winther, Jakob R., 2009, In: Analytical Biochemistry. 394, 2, p. 147-58 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Autoactivation of proteinase A initiates activation of yeast vacuolar zymogens

    van den Hazel, H. B., Kielland-Brandt, M. & Winther, Jakob R., 1992, In: European Journal of Biochemistry. 207, 1, p. 277-83 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Barley lipid transfer protein, LTP1, contains a new type of lipid-like post-translational modification

    Lindorff-Larsen, K., Lerche, M. H., Poulsen, F. M., Roepstorff, P. & Winther, Jakob R., 2001, In: Journal of Biological Chemistry. 276, 36, p. 33547-53 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Can a Charged Surfactant Unfold an Uncharged Protein?

    Højgaard, C., Sørensen, H. V., Pedersen, J. S., Winther, Jakob R. & Otzen, D. E., 2018, In: Biophysical Journal. 115, 11, p. 2081-2086 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Catalytic site interactions in yeast OMP synthase

    Hansen, M. R., Barr, E. W., Jensen, K. F., Willemoës, Martin, Grubmeyer, C. & Winther, Jakob R., 2014, In: Archives of Biochemistry and Biophysics. 542, p. 28-38 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Charge Engineering Reveals the Roles of Ionizable Side Chains in Electrospray Ionization Mass Spectrometry

    Abramsson, M. L., Sahin, C., Hopper, J. T. S., Branca, R. M. M., Danielsson, J., Xu, M., Chandler, S. A., Österlund, N., Ilag, L. L., Leppert, A., Costeira-Paulo, J., Lang, L., Teilum, K., Laganowsky, A., Benesch, J. L. P., Oliveberg, M., Robinson, C. V., Marklund, E. G., Allison, T. M., Winther, J. R. & 1 others, Landreh, M., 2021, In: JACS Au. 1, 12, p. 2385-2393 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Charge Interactions in a Highly Charge-Depleted Protein

    Hervø-Hansen, S., Højgaard, C., Johansson, Kristoffer Enøe, Wang, Y., Wahni, K., Young, D., Messens, J., Teilum, Kaare, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: Journal of the American Chemical Society. 143, 6, p. 2500-2508 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Co-evolution of drug resistance and broadened substrate recognition in HIV protease variants isolated from an Escherichia coli genetic selection system

    Koivisto, J. M., Poulsen, N. R., Larsen, B. S., Weibull, M. G. M., Stein, Amelie, Doro, F., Winther, Jakob R., Lindorff-Larsen, Kresten & Willemoës, Martin, 2022, In: The Biochemical journal. 479, 4, p. 479-501

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Competition between folding and glycosylation in the endoplasmic reticulum

    Holst, B., Bruun, A. W., Kielland-Brandt, M. & Winther, Jakob R., 1996, In: E M B O Journal. 15, 14, p. 3538-46 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Comprehensive mapping of GFP structure-function relationship using high-density peptide arrays

    Antonescu, O., Johansson, Kristoffer Enøe & Winther, Jakob R., 10 Jul 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  18. Published

    Computational and Experimental Assessment of Backbone Templates for Computational Redesign of the Thioredoxin Fold

    Marin, Frederikke Isa, Johansson, Kristoffer Enøe, O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: The Journal of Physical Chemistry B. 125, 40, p. 11141-11149

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Computational and experimental assessment of backbone templates for computational protein design

    Marin, Frederikke Isa, Johansson, K. E., O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, 15 p.

    Research output: Working paper › Preprint › Research

  20. Published

    Computational redesign of thioredoxin is hypersensitive towards minor conformational changes in the backbone template

    Johansson, Kristoffer Enøe, Johansen, Nicolai Tidemand, Christensen, S., Horowitz, S., Bardwell, J. C. A., Olsen, Johan Gotthardt, Willemoës, Martin, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J., Hamelryck, Thomas Wim & Winther, Jakob R., 2016, In: Journal of Molecular Biology. 428, 21, p. 4361-4377 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Crystallization of mutant forms of glutaredoxin Grx1p from yeast

    Håkansson, K. O., Østergaard, H. & Winther, Jakob R., 2006, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 62, 9, p. 920-922

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Cytoplasmic glutathione redox status determines survival upon exposure to the thiol-oxidant 4,4'-dipyridyl disulfide.

    López-Mirabal, H. R., Thorsen, M., Kielland-Brandt, M. C., Toledano, M. B. & Winther, Jakob R., 2007, In: FEMS Yeast Research. 7, 3, p. 391-403 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Editorial overview: A perspective on protein evolution

    Hoecker, B. & Winther, Jakob R., 2018, In: Current Opinion in Structural Biology. 48, p. viii-ix 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  24. Published

    Endoplasmic reticulum transport of glutathione by Sec61 is regulated by Ero1 and Bip

    Ponsero, A. J., Igbaria, A., Darch, M. A., Miled, S., Outten, C. E., Winther, Jakob R., Palais, G., D'Autréaux, B., Delaunay-Moisan, A. & Toledano, M. B., 21 Sep 2017, In: Molecular Cell. 67, 6, p. 962-973.e5 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Engineering Bifidobacterium longum Endo-α-N-acetylgalactosaminidase for Neu5Acα2-3Ga1β1-3Ga1NAc reactivity on Fetuin

    Hansen, D. K., Hansen, A. L., Koivisto, J. M., Shuoker, B., Abou Hachem, M., Winther, Jakob R. & Willemoës, Martin, 2022, In: Archives of Biochemistry and Biophysics. 725, 8 p., 109280.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Erv2p: characterization of the redox behavior of a yeast sulfhydryl oxidase.

    Wang, W., Winther, Jakob R. & Thorpe, C., 2007, In: Biochemistry. 46, 11, p. 3246-54 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Evidence that translation reinitiation leads to a partially functional Menkes protein containing two copper-binding sites

    Paulsen, M., Lund, C., Akram, Z., Winther, Jakob R., Horn, N. & Møller, L. B., 2006, In: American Journal of Human Genetics. 79, 2, p. 214-29 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Evolution i overhalingsbanen

    Abildgaard, A. B., Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Winther, Jakob R., 15 Dec 2017, In: Weekendavisen. 2017, 50, p. Ideer: 13 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  29. Published

    Exchange of regions of the carboxypeptidase Y propeptide. Sequence specificity and function in folding in vivo

    Ramos, C. & Winther, Jakob R., 1996, In: European Journal of Biochemistry. 242, 1, p. 29-35 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Exploring the antigenic response to multiplexed immunizations in a chicken model of antibody production

    Kousted, T. M., Kalliokoski, Otto, Christensen, S. K., Winther, Jakob R. & Hau, Jann, Mar 2017, In: Heliyon. 3, 3, 19 p., e00267.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Flash properties of Gaussia luciferase are the result of covalent inhibition after a limited number of cycles

    Dijkema, F. M., Nordentoft, M. K., Didriksen, A. K., Corneliussen, A. S., Willemoës, Martin & Winther, Jakob R., 2021, In: Protein Science. 30, 3, p. 638-649 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Fluorometric polyethyleneglycol-peptide hybrid substrates for quantitative assay of protein disulfide isomerase

    Christiansen, C., Hilaire, P. M. S. & Winther, Jakob R., 2004, In: Analytical Biochemistry. 333, 1, p. 148-155 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Functional differences in yeast protein disulfide isomerases

    Nørgaard, P., Westphal, V., Tachibana, C., Alsøe, L., Holst, B. & Winther, Jakob R., 2001, In: Journal of Cell Biology. 152, 3, p. 553-562 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Functional properties of the two redox-active sites in yeast protein disulphide isomerase in vitro and in vivo

    Westphal, V., Darby, N. J. & Winther, Jakob R., 1999, In: Journal of Molecular Biology. 286, 4, p. 1229-1239 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Gene regulation in response to protein disulphide isomerase deficiency

    Nørgaard, P., Tachibana, C., Bruun, A. W. & Winther, Jakob R., 2003, In: Yeast. 20, 7, p. 645-652 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Genetic interaction between the ero1-1 and leu2 mutations in Saccharomyces cerevisiae.

    López-Mirabal, H. R., Winther, Jakob R. & Kielland-Brandt, M. C., 2007, In: Bioscience, Biotechnology, and Biochemistry. 71, 12, p. 2934-42 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Global analysis of multi-mutants to improve protein function

    Johansson, Kristoffer Enøe, Lindorff-Larsen, Kresten & Winther, Jakob R., 2023, In: Journal of Molecular Biology. 435, 8, 15 p., 168034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    High-resolution imaging of redox signaling in live cells through an oxidation-sensitive yellow fluorescent protein

    Maulucci, G., Labate, V., Mele, M., Panieri, E., Arcovito, G., Galeotti, T., Østergaard, H., Winther, Jakob R., De Spirito, M. & Pani, G., 2008, In: Science Signaling. 1, 43, p. pl3 1-15 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Improving folding properties of computationally designed proteins

    Bjerre, B., Nissen, J., Madsen, M., Kamarauskaite, J., Norrild, R. K., Holm, Peter Christoffer, Nordentoft, M. K., O'Shea, Charlotte, Willemoës, Martin, Johansson, Kristoffer Enøe & Winther, Jakob R., 13 Dec 2019, In: Protein Engineering Design and Selection (Print). 32, 3, p. 145-151 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Increased hydrophobicity of the S′1 binding site in carboxypeptidase Y obtained by site-directed mutagenesis

    Winther, Jakob R., Kielland-Brandt, M. C. & Breddam, K., 1985, In: Carlsberg Research Communications. 50, 5, p. 273-284 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Increasing protein stability by inferring substitution effects from high-throughput experiments

    Norrild, R. K., Johansson, Kristoffer Enøe, O'Shea, Charlotte, Morth, J. P., Lindorff-Larsen, Kresten & Winther, Jakob R., 2022, In: Cell Reports Methods. 2, 11, 11 p., 100333.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Increasing the reactivity of an artificial dithiol-bisulfide pair through modification of the electrostatic milieu

    Hansen, R. E., Østergaard, H. & Winther, Jakob R., 2005, In: Biochemistry.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Increasing the reactivity of an artificial dithiol-disulfide pair through modification of the electrostatic milieu

    Hansen, R. E., Østergaard, H. & Winther, Jakob R., 2005, In: Biochemistry. 44, 15, p. 5899-906 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Intracellular glutathione pools are heterogeneously concentrated

    Montero, D., Tachibana, C., Winther, Jakob R. & Appenzeller-Herzog, C., 2013, In: Redox Biology. 1, 1, p. 508-513 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Kinetic analysis of the mechanism and specificity of protein-disulfide isomerase using fluorescence-quenched peptides

    Westphal, V., Spetzler, J. C., Meldal, Morten Peter, Christensen, U. & Winther, Jakob R., 1998, In: Journal of Biological Chemistry. 273, 39, p. 24992-9 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Kinetic and Thermodynamic Aspects of Cellular Thiol-Disulfide Redox Regulation

    Jensen, K. S., Hansen, R. E. & Winther, Jakob R., 2009, In: Antioxidants & Redox Signaling. 11, 5, p. 1047-1058

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Kinetic and thermodynamic properties of two barley thioredoxin h isozymes, HvTrxh1 and HvTrxh2

    Maeda, K., Hägglund, Per Mårten, Björnberg, O., Winther, Jakob R. & Svensson, B., 2010, In: FEBS Letters. 584, 15, p. 3376-3380 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Ligand recognition and domain structure of Vps10p, a vacuolar protein sorting receptor in Saccharomyces cerevisiae

    Jørgensen, M. U., Emr, S. D. & Winther, Jakob R., 1999, In: European Journal of Biochemistry. 260, 2, p. 461-469 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Measuring intracellular redox conditions using GFP-based sensors

    Björnberg, O., Ostergaard, H. & Winther, Jakob R., 2006, In: Antioxidants & Redox Signaling. 8, 3-4, p. 354-61 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Mechanism and ion-dependence of in vitro autoactivation of yeast proteinase A: possible implications for compartmentalized activation in vivo

    Van Den Hazel, H., Wolff, A. M., Kielland-Brandt, M. & Winther, Jakob R., 1997, In: Biochemical Journal. 326 ( Pt 2), p. 339-44 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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