Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica) : diversity, habitats, and biodegradation of aromatic compounds. / Salvà-Serra, Francisco; Pérez-Pantoja, Danilo; Donoso, Raúl A.; Jaén-Luchoro, Daniel; Fernández-Juárez, Víctor; Engström-Jakobsson, Hedvig; Moore, Edward R.B.; Lalucat, Jorge; Bennasar-Figueras, Antoni.
I: Frontiers in Microbiology, Bind 14, 1159176, 2023.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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TY - JOUR
T1 - Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica)
T2 - diversity, habitats, and biodegradation of aromatic compounds
AU - Salvà-Serra, Francisco
AU - Pérez-Pantoja, Danilo
AU - Donoso, Raúl A.
AU - Jaén-Luchoro, Daniel
AU - Fernández-Juárez, Víctor
AU - Engström-Jakobsson, Hedvig
AU - Moore, Edward R.B.
AU - Lalucat, Jorge
AU - Bennasar-Figueras, Antoni
N1 - Publisher Copyright: Copyright © 2023 Salvà-Serra, Pérez-Pantoja, Donoso, Jaén-Luchoro, Fernández-Juárez, Engström-Jakobsson, Moore, Lalucat and Bennasar-Figueras.
PY - 2023
Y1 - 2023
N2 - Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species.
AB - Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species.
KW - aromatic compounds biodegradation
KW - comparative genomics
KW - Pseudomonas stutzeri group
KW - signature nucleotide positions
KW - Stutzerimonas
KW - Stutzerimonas balearica
U2 - 10.3389/fmicb.2023.1159176
DO - 10.3389/fmicb.2023.1159176
M3 - Journal article
C2 - 37275147
AN - SCOPUS:85161277094
VL - 14
JO - Frontiers in Microbiology
JF - Frontiers in Microbiology
SN - 1664-302X
M1 - 1159176
ER -
ID: 357271381