Incomplete lineage sorting and phenotypic evolution in marsupials

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Standard

Incomplete lineage sorting and phenotypic evolution in marsupials. / Feng, Shaohong; Bai, Ming; Rivas-González, Iker; Li, Cai; Liu, Shiping; Tong, Yijie; Yang, Haidong; Chen, Guangji; Xie, Duo; Sears, Karen E.; Franco, Lida M.; Gaitan-Espitia, Juan Diego; Nespolo, Roberto F.; Johnson, Warren E.; Yang, Huanming; Brandies, Parice A.; Hogg, Carolyn J.; Belov, Katherine; Renfree, Marilyn B.; Helgen, Kristofer M.; Boomsma, Jacobus J.; Schierup, Mikkel Heide; Zhang, Guojie.

I: Cell, Bind 185, Nr. 10, 2022, s. 1646-1660.e18.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Feng, S, Bai, M, Rivas-González, I, Li, C, Liu, S, Tong, Y, Yang, H, Chen, G, Xie, D, Sears, KE, Franco, LM, Gaitan-Espitia, JD, Nespolo, RF, Johnson, WE, Yang, H, Brandies, PA, Hogg, CJ, Belov, K, Renfree, MB, Helgen, KM, Boomsma, JJ, Schierup, MH & Zhang, G 2022, 'Incomplete lineage sorting and phenotypic evolution in marsupials', Cell, bind 185, nr. 10, s. 1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034

APA

Feng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K. E., Franco, L. M., Gaitan-Espitia, J. D., Nespolo, R. F., Johnson, W. E., Yang, H., Brandies, P. A., Hogg, C. J., Belov, K., Renfree, M. B., ... Zhang, G. (2022). Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, 185(10), 1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034

Vancouver

Feng S, Bai M, Rivas-González I, Li C, Liu S, Tong Y o.a. Incomplete lineage sorting and phenotypic evolution in marsupials. Cell. 2022;185(10):1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034

Author

Feng, Shaohong ; Bai, Ming ; Rivas-González, Iker ; Li, Cai ; Liu, Shiping ; Tong, Yijie ; Yang, Haidong ; Chen, Guangji ; Xie, Duo ; Sears, Karen E. ; Franco, Lida M. ; Gaitan-Espitia, Juan Diego ; Nespolo, Roberto F. ; Johnson, Warren E. ; Yang, Huanming ; Brandies, Parice A. ; Hogg, Carolyn J. ; Belov, Katherine ; Renfree, Marilyn B. ; Helgen, Kristofer M. ; Boomsma, Jacobus J. ; Schierup, Mikkel Heide ; Zhang, Guojie. / Incomplete lineage sorting and phenotypic evolution in marsupials. I: Cell. 2022 ; Bind 185, Nr. 10. s. 1646-1660.e18.

Bibtex

@article{0c43c1e1ee0b4cd1ac2b093adbe114f5,

title = "Incomplete lineage sorting and phenotypic evolution in marsupials",

abstract = "Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during rapid speciation events, inducing incongruences between gene trees and species trees. ILS has complicated phylogenetic inference in many lineages, including hominids. However, we lack empirical evidence that ILS leads to incongruent phenotypic variation. Here, we performed phylogenomic analyses to show that the South American monito del monte is the sister lineage of all Australian marsupials, although over 31% of its genome is closer to the Diprotodontia than to other Australian groups due to ILS during ancient radiation. Pervasive conflicting phylogenetic signals across the whole genome are consistent with some of the morphological variation among extant marsupials. We detected hundreds of genes that experienced stochastic fixation during ILS, encoding the same amino acids in non-sister species. Using functional experiments, we confirm how ILS may have directly contributed to hemiplasy in morphological traits that were established during rapid marsupial speciation ca. 60 mya.",

keywords = "biogeography, CoalHMM, gene-phenotype incongruence, hemiplasy, incomplete lineage sorting, marsupial, monito del monte, phylogenetic inference, rapid speciation, trait evolution",

author = "Shaohong Feng and Ming Bai and Iker Rivas-Gonz{\'a}lez and Cai Li and Shiping Liu and Yijie Tong and Haidong Yang and Guangji Chen and Duo Xie and Sears, {Karen E.} and Franco, {Lida M.} and Gaitan-Espitia, {Juan Diego} and Nespolo, {Roberto F.} and Johnson, {Warren E.} and Huanming Yang and Brandies, {Parice A.} and Hogg, {Carolyn J.} and Katherine Belov and Renfree, {Marilyn B.} and Helgen, {Kristofer M.} and Boomsma, {Jacobus J.} and Schierup, {Mikkel Heide} and Guojie Zhang",

note = "Publisher Copyright: {\textcopyright} 2022 Elsevier Inc.",

year = "2022",

doi = "10.1016/j.cell.2022.03.034",

language = "English",

volume = "185",

pages = "1646--1660.e18",

journal = "Cell",

issn = "0092-8674",

publisher = "Cell Press",

number = "10",

}

RIS

TY - JOUR

T1 - Incomplete lineage sorting and phenotypic evolution in marsupials

AU - Feng, Shaohong

AU - Bai, Ming

AU - Rivas-González, Iker

AU - Li, Cai

AU - Liu, Shiping

AU - Tong, Yijie

AU - Yang, Haidong

AU - Chen, Guangji

AU - Xie, Duo

AU - Sears, Karen E.

AU - Franco, Lida M.

AU - Gaitan-Espitia, Juan Diego

AU - Nespolo, Roberto F.

AU - Johnson, Warren E.

AU - Yang, Huanming

AU - Brandies, Parice A.

AU - Hogg, Carolyn J.

AU - Belov, Katherine

AU - Renfree, Marilyn B.

AU - Helgen, Kristofer M.

AU - Boomsma, Jacobus J.

AU - Schierup, Mikkel Heide

AU - Zhang, Guojie

PY - 2022

Y1 - 2022

N2 - Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during rapid speciation events, inducing incongruences between gene trees and species trees. ILS has complicated phylogenetic inference in many lineages, including hominids. However, we lack empirical evidence that ILS leads to incongruent phenotypic variation. Here, we performed phylogenomic analyses to show that the South American monito del monte is the sister lineage of all Australian marsupials, although over 31% of its genome is closer to the Diprotodontia than to other Australian groups due to ILS during ancient radiation. Pervasive conflicting phylogenetic signals across the whole genome are consistent with some of the morphological variation among extant marsupials. We detected hundreds of genes that experienced stochastic fixation during ILS, encoding the same amino acids in non-sister species. Using functional experiments, we confirm how ILS may have directly contributed to hemiplasy in morphological traits that were established during rapid marsupial speciation ca. 60 mya.

AB - Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during rapid speciation events, inducing incongruences between gene trees and species trees. ILS has complicated phylogenetic inference in many lineages, including hominids. However, we lack empirical evidence that ILS leads to incongruent phenotypic variation. Here, we performed phylogenomic analyses to show that the South American monito del monte is the sister lineage of all Australian marsupials, although over 31% of its genome is closer to the Diprotodontia than to other Australian groups due to ILS during ancient radiation. Pervasive conflicting phylogenetic signals across the whole genome are consistent with some of the morphological variation among extant marsupials. We detected hundreds of genes that experienced stochastic fixation during ILS, encoding the same amino acids in non-sister species. Using functional experiments, we confirm how ILS may have directly contributed to hemiplasy in morphological traits that were established during rapid marsupial speciation ca. 60 mya.

KW - biogeography

KW - CoalHMM

KW - gene-phenotype incongruence

KW - hemiplasy

KW - incomplete lineage sorting

KW - marsupial

KW - monito del monte

KW - phylogenetic inference

KW - rapid speciation

KW - trait evolution

U2 - 10.1016/j.cell.2022.03.034

DO - 10.1016/j.cell.2022.03.034

M3 - Journal article

C2 - 35447073

AN - SCOPUS:85130220337

VL - 185

SP - 1646-1660.e18

JO - Cell

JF - Cell

SN - 0092-8674

IS - 10

ER -

ID: 310425539

Biologisk Institut