The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights
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Originalsprog | Engelsk |
---|---|
Tidsskrift | Cell |
Vol/bind | 186 |
Udgave nummer | 6 |
Sider (fra-til) | 1279-1294.e19 |
Antal sider | 36 |
ISSN | 0092-8674 |
DOI | |
Status | Udgivet - 2023 |
Bibliografisk note
Funding Information:
This study was supported by the National Key R&D Program of China ( 2022YFD2400100 , 2022YFC2807500 ); the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) (No. 2022QNLM030004 ); the Central Public-interest Scientific Institution Basal Research Fund, CAFS (NO. 2019QY01 ); the Major Science and Technology Innovation Project of Shandong Province ( 2018SDKJ0302 ); the AoShan Talents Cultivation Program Supported by Qingdao National Laboratory for Marine Science and Technology ( 2017ASTCP-ES06 ); the Taishan Scholars Program (NO. tstp20221149 to C.S.); the National Ten-Thousands Talents Special Support Program to C.S.; the Central Public-interest Scientific Institution Basal Research Fund , CAFS (No. 2020TD19 ); the Specially-Appointed Professor Program of Jiangsu Province to I.S.; the Jiangsu Foreign Expert Bureau to I.S.; and the Helmholtz Earth and Environment Research Program "Changing Earth - Sustaining our Future", Topic 6, Subtopic 6.2 to B.M. We appreciate the support from the supercomputing center of Qingdao National Laboratory for Marine Science and Technology. We also appreciate the technical support from China National GeneBank for the library construction and sequencing in Hi-C and whole-genome short reads.
Funding Information:
This study was supported by the National Key R&D Program of China (2022YFD2400100, 2022YFC2807500); the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) (No. 2022QNLM030004); the Central Public-interest Scientific Institution Basal Research Fund, CAFS (NO.2019QY01); the Major Science and Technology Innovation Project of Shandong Province (2018SDKJ0302); the AoShan Talents Cultivation Program Supported by Qingdao National Laboratory for Marine Science and Technology (2017ASTCP-ES06); the Taishan Scholars Program (NO.tstp20221149 to C.S.); the National Ten-Thousands Talents Special Support Program to C.S.; the Central Public-interest Scientific Institution Basal Research Fund, CAFS (No.2020TD19); the Specially-Appointed Professor Program of Jiangsu Province to I.S.; the Jiangsu Foreign Expert Bureau to I.S.; and the Helmholtz Earth and Environment Research Program "Changing Earth - Sustaining our Future", Topic 6, Subtopic 6.2 to B.M. We appreciate the support from the supercomputing center of Qingdao National Laboratory for Marine Science and Technology. We also appreciate the technical support from China National GeneBank for the library construction and sequencing in Hi-C and whole-genome short reads. C.S. initiated the Antarctic krill genome project. C.S. G.F. and B.M. conceived the study and coordinated the work. C.S. G.F. S.S. K.L. Jiahao Wang, Shuo Li, I.S. X.L. S.J. B.E.D. G.Z. and H.Y. wrote the manuscript with contributions from all other authors. C.S. X.Z. G.F. B.E.D. Yang Wang, S.K. Y.Y. and Shanshan Liu. coordinated and performed sample collection and sequencing. K.L. J.H. Shuo Li, Q.L. Jiahao Wang, T.S. and J.R. performed genome assembly into contigs and genome correction and transcript alignment. Jiahao Wang, K.L. S.S. S.P. and H.Z. performed repeat analysis. Shuo Li, K.L. G.H. B.F. R.W. K.M. X.J. and X.H. undertook transcriptome and genome annotation analysis. S.L. A.B. C.D.P. G.S. Yaolei Zhang, K.L. B.F. J.X. X.Z. Jun Wang, and B.M. conducted comparative genomics analysis. Y.S. B.Y. Q.W. and H.-Y.W. performed the isolation of RNA and DNA and the validation of SNPs by PCR and Sanger sequencing. S.S. B.E.D. S.J. Yaolei Zhang, M.X. Yalin Liu, Yuyan Liu, J.Z. X.W. Shufang Liu; Yue Wang, and X.X. conducted population analysis. The authors declare no competing interests.
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© 2023 The Author(s)
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