Transposable element islands facilitate adaptation to novel environments in an invasive species

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Standard

Transposable element islands facilitate adaptation to novel environments in an invasive species. / Schrader, Lukas; Kim, Jay W; Ence, Daniel; Zimin, Aleksey; Klein, Antonia; Wyschetzki, Katharina; Weichselgartner, Tobias; Kemena, Carsten; Stökl, Johannes; Schultner, Eva; Wurm, Yannick; Smith, Christopher D; Yandell, Mark; Heinze, Jürgen; Gadau, Jürgen; Oettler, Jan.

I: Nature Communications, Bind 5, 5495, 2014.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Schrader, L, Kim, JW, Ence, D, Zimin, A, Klein, A, Wyschetzki, K, Weichselgartner, T, Kemena, C, Stökl, J, Schultner, E, Wurm, Y, Smith, CD, Yandell, M, Heinze, J, Gadau, J & Oettler, J 2014, 'Transposable element islands facilitate adaptation to novel environments in an invasive species', Nature Communications, bind 5, 5495. https://doi.org/10.1038/ncomms6495

APA

Schrader, L., Kim, J. W., Ence, D., Zimin, A., Klein, A., Wyschetzki, K., Weichselgartner, T., Kemena, C., Stökl, J., Schultner, E., Wurm, Y., Smith, C. D., Yandell, M., Heinze, J., Gadau, J., & Oettler, J. (2014). Transposable element islands facilitate adaptation to novel environments in an invasive species. Nature Communications, 5, [5495]. https://doi.org/10.1038/ncomms6495

Vancouver

Schrader L, Kim JW, Ence D, Zimin A, Klein A, Wyschetzki K o.a. Transposable element islands facilitate adaptation to novel environments in an invasive species. Nature Communications. 2014;5. 5495. https://doi.org/10.1038/ncomms6495

Author

Schrader, Lukas ; Kim, Jay W ; Ence, Daniel ; Zimin, Aleksey ; Klein, Antonia ; Wyschetzki, Katharina ; Weichselgartner, Tobias ; Kemena, Carsten ; Stökl, Johannes ; Schultner, Eva ; Wurm, Yannick ; Smith, Christopher D ; Yandell, Mark ; Heinze, Jürgen ; Gadau, Jürgen ; Oettler, Jan. / Transposable element islands facilitate adaptation to novel environments in an invasive species. I: Nature Communications. 2014 ; Bind 5.

Bibtex

@article{4bb1c3e285994d809e42536054681ba9,
title = "Transposable element islands facilitate adaptation to novel environments in an invasive species",
abstract = "Adaptation requires genetic variation, but founder populations are generally genetically depleted. Here we sequence two populations of an inbred ant that diverge in phenotype to determine how variability is generated. Cardiocondyla obscurior has the smallest of the sequenced ant genomes and its structure suggests a fundamental role of transposable elements (TEs) in adaptive evolution. Accumulations of TEs (TE islands) comprising 7.18% of the genome evolve faster than other regions with regard to single-nucleotide variants, gene/exon duplications and deletions and gene homology. A non-random distribution of gene families, larvae/adult specific gene expression and signs of differential methylation in TE islands indicate intragenomic differences in regulation, evolutionary rates and coalescent effective population size. Our study reveals a tripartite interplay between TEs, life history and adaptation in an invasive species.",
keywords = "Adaptation, Physiological, Animals, Ants, Biological Evolution, Brazil, DNA Methylation, DNA Transposable Elements, Exons, Gene Deletion, Gene Duplication, Genes, Insect, Genome, Insect, Genomic Islands, Introduced Species, Japan, Phylogeography, Polymorphism, Single Nucleotide",
author = "Lukas Schrader and Kim, {Jay W} and Daniel Ence and Aleksey Zimin and Antonia Klein and Katharina Wyschetzki and Tobias Weichselgartner and Carsten Kemena and Johannes St{\"o}kl and Eva Schultner and Yannick Wurm and Smith, {Christopher D} and Mark Yandell and J{\"u}rgen Heinze and J{\"u}rgen Gadau and Jan Oettler",
year = "2014",
doi = "10.1038/ncomms6495",
language = "English",
volume = "5",
journal = "Nature Communications",
issn = "2041-1723",
publisher = "nature publishing group",

}

RIS

TY - JOUR

T1 - Transposable element islands facilitate adaptation to novel environments in an invasive species

AU - Schrader, Lukas

AU - Kim, Jay W

AU - Ence, Daniel

AU - Zimin, Aleksey

AU - Klein, Antonia

AU - Wyschetzki, Katharina

AU - Weichselgartner, Tobias

AU - Kemena, Carsten

AU - Stökl, Johannes

AU - Schultner, Eva

AU - Wurm, Yannick

AU - Smith, Christopher D

AU - Yandell, Mark

AU - Heinze, Jürgen

AU - Gadau, Jürgen

AU - Oettler, Jan

PY - 2014

Y1 - 2014

N2 - Adaptation requires genetic variation, but founder populations are generally genetically depleted. Here we sequence two populations of an inbred ant that diverge in phenotype to determine how variability is generated. Cardiocondyla obscurior has the smallest of the sequenced ant genomes and its structure suggests a fundamental role of transposable elements (TEs) in adaptive evolution. Accumulations of TEs (TE islands) comprising 7.18% of the genome evolve faster than other regions with regard to single-nucleotide variants, gene/exon duplications and deletions and gene homology. A non-random distribution of gene families, larvae/adult specific gene expression and signs of differential methylation in TE islands indicate intragenomic differences in regulation, evolutionary rates and coalescent effective population size. Our study reveals a tripartite interplay between TEs, life history and adaptation in an invasive species.

AB - Adaptation requires genetic variation, but founder populations are generally genetically depleted. Here we sequence two populations of an inbred ant that diverge in phenotype to determine how variability is generated. Cardiocondyla obscurior has the smallest of the sequenced ant genomes and its structure suggests a fundamental role of transposable elements (TEs) in adaptive evolution. Accumulations of TEs (TE islands) comprising 7.18% of the genome evolve faster than other regions with regard to single-nucleotide variants, gene/exon duplications and deletions and gene homology. A non-random distribution of gene families, larvae/adult specific gene expression and signs of differential methylation in TE islands indicate intragenomic differences in regulation, evolutionary rates and coalescent effective population size. Our study reveals a tripartite interplay between TEs, life history and adaptation in an invasive species.

KW - Adaptation, Physiological

KW - Animals

KW - Ants

KW - Biological Evolution

KW - Brazil

KW - DNA Methylation

KW - DNA Transposable Elements

KW - Exons

KW - Gene Deletion

KW - Gene Duplication

KW - Genes, Insect

KW - Genome, Insect

KW - Genomic Islands

KW - Introduced Species

KW - Japan

KW - Phylogeography

KW - Polymorphism, Single Nucleotide

U2 - 10.1038/ncomms6495

DO - 10.1038/ncomms6495

M3 - Journal article

C2 - 25510865

VL - 5

JO - Nature Communications

JF - Nature Communications

SN - 2041-1723

M1 - 5495

ER -

ID: 162861269