Søren Johannes Sørensen
Professor
Microbiology
Universitetsparken 15
2100 København Ø
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Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora
Habibi, R., Tarighi, S., Behravan, J., Taheri, P., Kjøller, Annelise Helene, Brejnrod, A. D., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2017, In: Genome Announcements. 5, 13, 2 p., e00026-17.Research output: Contribution to journal › Journal article › Research › peer-review
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When it makes sense to socialize whilst being on the move: A small EAL-domain containing protein, encoded on natural biofilm-promoting plasmids, triggers motility
Madsen, Jonas Stenløkke, Riber, Leise, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012.Research output: Contribution to conference › Poster › Research
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Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea and fungi) - With potential implications for ecosystem functioning
Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, Lorrie, Sørensen, Søren Johannes, Urich, T. & Weigel, R., 2023, In: Environmental Microbiology. 25, 6, 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Vitamin D and allergic airway disease shape the murine lung microbiome in a sex-specific manner
Roggenbuck, M., Anderson, D., Barfod, K. K., Feelisch, M., Geldenhuys, S., Sørensen, Søren Johannes, Weeden, C. E., Hart, P. H. & Gorman, S., 2016, In: Respiratory Research. 17, 18 p., 116.Research output: Contribution to journal › Journal article › Research › peer-review
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Versatile biosensor vectors for detection and quantification of mercury
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Letters. 193, 1, p. 123-127Research output: Contribution to journal › Journal article › Research › peer-review
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Vaginal dysbiosis in pregnancy associates with risk of emergency caesarean section: a prospective cohort study
Haahr, T., Clausen, Tine Dalsgaard, Thorsen, J., Rasmussen, Morten Arendt, Mortensen, M. S., Lehtimäki, J., Shah, S. A., Hjelmsø, M. H., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Vestergaard, G., Jacobsson, B., Larsson, P., Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2022, In: Clinical Microbiology and Infection. 28, 4, p. Pages 588-595Research output: Contribution to journal › Journal article › Research › peer-review
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Utilization of phenoxyacetic acid, by strains using either the ortho- or meta-cleavage of catechol during phenol degradation, after conjugal transfer of tfdA, the gene encoding 2,4-dichlorophenoxyacetid acid/alfa-ketoglutarate dioxygn
de Lipthay, J. R., Barkay, T., Vekova, J. & Sørensen, Søren Johannes, 1999, In: Appl. Microbiol. Biotech.. 51, p. 207-214Research output: Contribution to journal › Journal article › Research › peer-review
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Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition
Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2005, In: Microbial Ecology. 50, 2, p. 221-229Research output: Contribution to journal › Journal article › Research › peer-review
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Urbanized microbiota in infants, immune constitution and later risk of atopic diseases
Lehtimäki, J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, Urvish, Vestergaard, G., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2021, In: Journal of Allergy and Clinical Immunology. 148, 1, p. 234-243 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
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Unexpected diversity among small-scale sample replicates of defined plant root compartments
Attia, S., Russel, J., Mortensen, M. S., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2022, In: ISME Journal. 16, 4, p. 997-1003 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids
Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains
Burmølle, Mette, Bahl, M. I., Jensen, L. B., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2008, In: Microbiology. 154, Pt 1, p. 187-95 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer
Madsen, Jonas Stenløkke, Riber, Leise, Kot, Witold, Basfeld, A., Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: P L o S One. 11, 9, 19 p., e0162390.Research output: Contribution to journal › Journal article › Research › peer-review
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Transfer of plasmid RP4 in the spermosphere and rhizosphere of barley seedling
Sørensen, Søren Johannes & Jensen, L., 1998, In: Antonie van Leeuwenhoek. International Journal of General and Molecular Microbiology. 73, p. 69-77Research output: Contribution to journal › Journal article › Research
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Tillage shapes the soil and rhizosphere microbiome of barley - but not its susceptibility towards Blumeria graminis f. sp. hordei
Bziuk, N., Maccario, Lorrie, Douchkov, D., Lueck, S., Babin, D., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The use of whole-cell biosensors to detect and quantify compounds or conditions affecting biological systems
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2001, In: Microbial Ecology. 42, 4, p. 483-494Research output: Contribution to journal › Journal article › Research › peer-review
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The treasure inside barley seeds: microbial diversity and plant beneficial bacteria
Bziuk, N., Maccario, Lorrie, Straube, B., Wehner, G., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: Environmental Microbiomes. 16, 21 p., 20.Research output: Contribution to journal › Journal article › Research › peer-review
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The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants
Teseo, S., van Zweden, J. S., Pontieri, L., Kooij, P. W., Sørensen, Søren Johannes, Wenseleers, T., Poulsen, Michael, Boomsma, Jacobus J. & Sapountzis, P., 2019, In: Animal Behaviour. 150, p. 239-254Research output: Contribution to journal › Journal article › Research › peer-review
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The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria.
Burmølle, Mette, Johnsen, K., Abu Al-Soud, W. M. A. F., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Journal of Microbiological Methods. 79, 2, p. 166-173 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The nitrogenase gene pool in surface waters of the global ocean is dominated by genes of non-cyanobacteria
Farnelid, H., Andersson, A., Bertilsson, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Hagström & Riemann, Lasse, 2010.Research output: Contribution to conference › Poster › Research
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The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits
Würth, D. G., Dahl, M. B., Trouillier, M., Wilmking, M., Unterseher, M., Scholler, M., Sørensen, Søren Johannes, Mortensen, M. & Schnittler, M., 2019, In: Fungal Ecology. 41, p. 177-186 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum)
Wamberg, C., Christensen, Søren, Jakobsen, I., Müller, A. K. & Sørensen, Søren Johannes, 2003, In: Soil Biology & Biochemistry. Vol. 35, issue 10, p. 1349-1357Research output: Contribution to journal › Journal article › Research › peer-review
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The murine lung microbiome in relation to the intestinal and vaginal bacterial communities
Barfod, K. K., Roggenbuck, M., Hansen, Lars Hestbjerg, Schjørring, S., Larsen, S. T., Sørensen, Søren Johannes & Krogfelt, K. A., 2013, In: B M C Microbiology. 13, 12 p., 303.Research output: Contribution to journal › Journal article › Research › peer-review
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The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups
Bahl, M. I., Hansen, Lars Hestbjerg, Goesmann, A. & Sørensen, Søren Johannes, 2007, In: Plasmid. 58, 1, p. 31-43Research output: Contribution to journal › Journal article › Research › peer-review
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The microbiome of captive hamadryas baboons
Li, Xuan Ji, Trivedi, Urvish, Brejnrod, A. D., Vestergaard, G. A., Mortensen, M. S., Bertelsen, Mads Frost & Sørensen, Søren Johannes, 2020, In: BMC Animal Microbiome. 2, 10 p., 25.Research output: Contribution to journal › Journal article › Research › peer-review
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The microbiome of New World vultures
Roggenbuck, M., Schnell, I. B., Blom, N., Bælum, J., Bertelsen, M. F., Sicheritz-Pontén, T., Sørensen, Søren Johannes, Gilbert, M Thomas P, Graves, G. R. & Hansen, L. H., 2014, In: Nature Communications. 5, 7 p., 5498.Research output: Contribution to journal › Journal article › Research › peer-review
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The lactic acid bacterium, Carnobacterium maltaromaticum possess a diverse range of potential virulence genes some of which are related to similar genes in Listeria monocytogenes
Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Ingmer, Hanne, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2010.Research output: Contribution to conference › Poster › Research
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The interconnection between biofilm formation and horizontal gene transfer
Madsen, Jonas Stenløkke, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: F E M S Immunology and Medical Microbiology. 65, 2, p. 183-195 13 p.Research output: Contribution to journal › Review › Research › peer-review
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The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity
Gao, C., Cao, H., Cai, P. & Sørensen, Søren Johannes, 2021, In: ISME Journal. 15, p. 29-40 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The infant gut virome is associated with preschool asthma risk independently of bacteria
Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition
Li, Xuan Ji, Stokholm, Jakob, Brejnrod, A., Vestergaard, G. A., Russel, J., Trivedi, Urvish, Thorsen, Jonathan Jan Ilve, Gupta, S., Hjelmsø, M. H., Shah, S. A., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: Cell Host & Microbe. 29, 6, p. 975–987.e4 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host
Røder, Henriette Lyng, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 344, 2, p. 186-192 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
Nielsen, Dennis Sandris, Larsen, Nadja, Vogensen, Finn Kvist, van den Berg, F. W. J., Andreasen, A. S., Pedersen, B. K., Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2010. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
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The giraffe (Giraffa camelopardalis) rumen microbiome
Roggenbuck, M., Sauer, C., Poulsen, M., Bertelsen, M. F. & Sørensen, Søren Johannes, 2014, In: F E M S Microbiology Ecology. 90, 1, p. 237-246 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors
Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Hansen, L., Ingmer, Hanne & Sørensen, Søren Johannes, 2012, In: International Journal of Food Microbiology. 152, 3, p. 107-115 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review
Douglas, T. A., Loseto, L. L., Macdonald, R. W., Outridge, P., Dommergue, A., Poulain, A., Amyot, M., Barkay, T., Berg, T., Chételat, J., Constant, P., Evans, M., Ferrari, C., Gantner, N., Johnson, M. S., Kirk, J., Kroer, N., Larose, C., Lean, D., Nielsen, T. G. & 7 others, , 2012, In: Environmental Chemistry (Online). 9, 4, p. 321-355 35 p.Research output: Contribution to journal › Review › Research › peer-review
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The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR
Masoud, W. M. H., Vogensen, Finn Kvist, Lillevang, S., Abu Al-Soud, W., Sørensen, Søren Johannes & Jakobsen, M., 2012, In: International Journal of Food Microbiology. 153, 1-2, p. 192-202 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The effect of L. acidophilus NCFM intake on insulin sensitivity and gut microbiota: a randomized placebo-controlled trial
Larsen, Nadja, Andreasen, A. S., Pedersen-Skovsgaard, T., Møller, K., van den Berg, F. W. J., Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Vogensen, Finn Kvist, Pedersen, Bente Klarlund & Jakobsen, M., Sep 2010.Research output: Contribution to conference › Conference abstract for conference › Research
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The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Escherichia coli and Pseudomonas fluorescens
Hansen, Lars Hestbjerg, Knudsen, S. & Sørensen, Søren Johannes, 1998, In: Current Microbiology. 36, 6, p. 341-347Research output: Contribution to journal › Journal article › Research › peer-review
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The effect of longterm exposure to mercury on the bacterial community in marine sediment
Rasmussen, L. D. & Sørensen, Søren Johannes, 1998, In: Current Microbiology. 36, p. 291-297Research output: Contribution to journal › Journal article › Research
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The effect of early probiotic exposure on the preterm infant gut microbiome development
Hui, Y., Smith, Birgitte, Mortensen, M. S., Krych, Lukasz, Sørensen, Søren Johannes, Greisen, Gorm, Krogfelt, K. A. & Nielsen, Dennis Sandris, 2021, In: Gut Microbes. 13, 1, 15 p., 1951113.Research output: Contribution to journal › Journal article › Research › peer-review
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The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures
Heins, A., Lundin, L., Nunes, I., Gernaey, K. V., Sørensen, Søren Johannes & Eliasson Lantz, A., 2019, In: Biotechnology Progress. 35, 3, e2796.Research output: Contribution to journal › Journal article › Research › peer-review
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The diversity, structure and function of soil microbial communities exposed to different disturbances
Müller, A. K., Westergaard, K., Christensen, S. & Sørensen, Søren Johannes, 2002, In: Microbial Ecology. 44, p. 49-58Research output: Contribution to journal › Journal article › Research › peer-review
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The developing hypopharyngeal microbiota in early life
Mortensen, M. S., Brejnrod, A. D., Roggenbuck, M., Abu Al-Soud, W., Balle, C., Krogfelt, K. A., Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Waage, J. E., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2016, In: Microbiome. 4, 12 p., 70.Research output: Contribution to journal › Journal article › Research › peer-review
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The developing airway and gut microbiota in early life is influenced by age of older siblings
Christensen, E. D., Hjelmsø, M. H., Thorsen, Jonathan Jan Ilve, Shah, S., Redgwell, T., Poulsen, Christina Egeø, Trivedi, Urvish, Russel, J., Gupta, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Rasmussen, Morten Arendt, Bisgaard, H. & Stokholm, Jakob, 2022, In: Microbiome. 10, 15 p., 106.Research output: Contribution to journal › Journal article › Research › peer-review
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The bacterial microbiota in first-void urine from men with and without idiopathic urethritis
Frølund, M., Wikström, A., Lidbrink, P., Abu Al-Soud, W., Larsen, N., Harder, C. B., Sørensen, Søren Johannes, Jensen, J. S. & Ahrens, P., 2018, In: PLoS ONE. 13, 7, p. 1-19 e0201380.Research output: Contribution to journal › Journal article › Research › peer-review
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The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria
Thorsen, Jonathan Jan Ilve, Li, Xuan Ji, Peng, Shuang, Sunde, R. B., Shah, S. A., Bhattacharyya, M., Poulsen, C. S., Poulsen, Christina Egeø, Leal Rodriguez, C., Widdowson, Michael Lawrence, Neumann, A. U., Trivedi, Urvish, Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Nature Communications. 14, 12 p., 6668.Research output: Contribution to journal › Journal article › Research › peer-review
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The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains
de la Cruz Perera, C. I., Ren, D., Blanchet, M., Dendooven, L., Marsch, R., Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 338, 1, p. 95-100 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Jørgensen, H. S. & Jensen, L. B., 2005, In: Microbial Drug Resistance. 11, 4, p. 378-382Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4269
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
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