Joseph Nesme
Postdoc
Microbiology
Universitetsparken 15
2100 København Ø
- 2024
- Published
Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater
Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth
Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Hordeum vulgare differentiates its response to beneficial bacteria
Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas, Bacillus, Pseudochrobactrum, Brevundimonas, and Pandoraea
Maccario, Lorrie, Silva, A. F., Nesme, Joseph, Amador Hierro, Cristina Isabel, Sørensen, Søren Johannes, Cooper, V. S. & Røder, Henriette Lyng, 2023, In: Microbiology resource announcements. 12, 12, 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning
Moradigaravand, D., Li, L., Dechesne, A., Nesme, Joseph, de la Cruz, R., Ahmad, H., Banzhaf, M., Sørensen, Søren Johannes, Smets, B. F. & Kreft, J. U., 2023, In: Bioinformatics (Oxford, England). 39, 7, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media
Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community
Henriksen, N. N. S. E., Hansen, Mads Frederik, Kiesewalter, Heiko T., Russel, J., Nesme, Joseph, Foster, K. R., Svensson, B., Øregaard, G., Herschend, J. & Burmølle, Mette, 2022, In: npj Biofilms and Microbiomes. 8, 8 p., 59.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?
Wolters, B., Hauschild, K., Blau, K., Mulder, I., Heyde, B. J., Sørensen, Søren Johannes, Siemens, J., Jechalke, S., Smalla, K. & Nesme, Joseph, 2022, In: Environmental Microbiology. 24, 3, p. 1573-1589 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils
Topalović, O., Santos, S. S., Heuer, H., Nesme, Joseph, Kanfra, X., Hallmann, J., Sørensen, Søren Johannes & Vestergård, M., 2022, In: Applied Soil Ecology. 172, 9 p., 104344.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals
Zadel, U., Cruzeiro, C., Raj Durai, A. C., Nesme, Joseph, May, R., Balázs, H., Michalke, B., Płaza, G., Schröder, P., Schloter, M. & Radl, V., 2022, In: Environmental Pollution. 313, 13 p., 119989.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils
Olagoke, F. K., Bettermann, A., Nguyen, P. T. B., Redmile-Gordon, M., Babin, D., Smalla, K., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K. & Vogel, C., 2022, In: Biology and Fertility of Soils. 58, 4, p. 435-457 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage
Olesen, Asmus Kalckar, Pinilla Redondo, Rafael, Hansen, Mads Frederik, Russel, J., Dechesne, A., Smets, B. F., Madsen, Jonas Stenløkke, Nesme, Joseph & Sørensen, Søren Johannes, 2022, In: Molecular Ecology. 31, 5, p. 1595-1608Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes
Major, N., Jechalke, S., Nesme, Joseph, Goreta Ban, S., Černe, M., Sørensen, Søren Johannes, Ban, D., Grosch, R., Schikora, A. & Schierstaedt, J., 2022, In: Waste Management. 154, p. 126-135 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce
Sommermann, L., Babin, D., Behr, J. H., Chowdhury, S. P., Sandmann, M., Windisch, S., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2022, In: Microorganisms. 10, 9, 27 p., 1717.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs
Li, Xuan Ji, Rensing, C., Vestergaard, G., Arumugam, Mani, Nesme, Joseph, Gupta, S., Brejnrod, A. D. & Sørensen, Søren Johannes, 2022, In: Environment International. 158, 10 p., 106899.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantification and fate of plasmid-specific bacteriophages in wastewater: Beyond the F-coliphages
He, Z., Parra, B., Nesme, Joseph, Smets, B. F. & Dechesne, A., 2022, In: Water Research. 227, 8 p., 119320.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes
Pinilla Redondo, Rafael, Olesen, Asmus Kalckar, Russel, J., de Vries, L. E., Christensen, L. D., Musovic, S., Nesme, Joseph & Sørensen, Søren Johannes, 2021, In: mBio. 12, 6, 13 p., e0306821.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.
Singh, N. K., Lavire, C., Nesme, Joseph, Vial, L., Nesme, X., Mason, C. E., Lassalle, F. & Venkateswaran, K., 2021, In: Frontiers in Microbiology. 12, 15 p., 765943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories
Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments
Hassoun-Kheir, N., Stabholz, Y., Kreft, J-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J., Hough, R. & 1 others, , 2021, In: One Health. 13, 9 p., 100339.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis
Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage
Li, L., Nesme, Joseph, Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture
Tabacchioni, S., Passato, S., Ambrosino, P., Huang, L., Caldara, M., Cantale, C., Hett, J., Del Fiore, A., Fiore, A., Schlüter, A., Sczyrba, A., Maestri, E., Marmiroli, N., Neuhoff, D., Nesme, J., Sørensen, S. J., Aprea, G., Nobili, C., Presenti, O., Giovannetti, G. & 4 others, , 2021, In: Microorganisms. 9, 2, 23 p., 426.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 178764926
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Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus
Research output: Contribution to journal › Journal article › Research › peer-review
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115
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Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands
Research output: Contribution to journal › Journal article › Research › peer-review
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Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures
Research output: Contribution to journal › Journal article › Research › peer-review
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