Joseph Nesme

Joseph Nesme

Postdoc

ORCID: 0000-0003-1929-5040

Publication year:
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1 - 47 out of 47Page size: 500
  1. 2024
  2. Published

    Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater

    Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 2023
  6. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas, Bacillus, Pseudochrobactrum, Brevundimonas, and Pandoraea

    Maccario, Lorrie, Silva, A. F., Nesme, Joseph, Amador Hierro, Cristina Isabel, Sørensen, Søren Johannes, Cooper, V. S. & Røder, Henriette Lyng, 2023, In: Microbiology resource announcements. 12, 12, 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  8. Published

    Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

    Moradigaravand, D., Li, L., Dechesne, A., Nesme, Joseph, de la Cruz, R., Ahmad, H., Banzhaf, M., Sørensen, Søren Johannes, Smets, B. F. & Kreft, J. U., 2023, In: Bioinformatics (Oxford, England). 39, 7, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. 2022
  10. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community

    Henriksen, N. N. S. E., Hansen, Mads Frederik, Kiesewalter, Heiko T., Russel, J., Nesme, Joseph, Foster, K. R., Svensson, B., Øregaard, G., Herschend, J. & Burmølle, Mette, 2022, In: npj Biofilms and Microbiomes. 8, 8 p., 59.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?

    Wolters, B., Hauschild, K., Blau, K., Mulder, I., Heyde, B. J., Sørensen, Søren Johannes, Siemens, J., Jechalke, S., Smalla, K. & Nesme, Joseph, 2022, In: Environmental Microbiology. 24, 3, p. 1573-1589 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

    Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils

    Topalović, O., Santos, S. S., Heuer, H., Nesme, Joseph, Kanfra, X., Hallmann, J., Sørensen, Søren Johannes & Vestergård, M., 2022, In: Applied Soil Ecology. 172, 9 p., 104344.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals

    Zadel, U., Cruzeiro, C., Raj Durai, A. C., Nesme, Joseph, May, R., Balázs, H., Michalke, B., Płaza, G., Schröder, P., Schloter, M. & Radl, V., 2022, In: Environmental Pollution. 313, 13 p., 119989.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils

    Olagoke, F. K., Bettermann, A., Nguyen, P. T. B., Redmile-Gordon, M., Babin, D., Smalla, K., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K. & Vogel, C., 2022, In: Biology and Fertility of Soils. 58, 4, p. 435-457 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

    Olesen, Asmus Kalckar, Pinilla Redondo, Rafael, Hansen, Mads Frederik, Russel, J., Dechesne, A., Smets, B. F., Madsen, Jonas Stenløkke, Nesme, Joseph & Sørensen, Søren Johannes, 2022, In: Molecular Ecology. 31, 5, p. 1595-1608

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes

    Major, N., Jechalke, S., Nesme, Joseph, Goreta Ban, S., Černe, M., Sørensen, Søren Johannes, Ban, D., Grosch, R., Schikora, A. & Schierstaedt, J., 2022, In: Waste Management. 154, p. 126-135 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce

    Sommermann, L., Babin, D., Behr, J. H., Chowdhury, S. P., Sandmann, M., Windisch, S., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2022, In: Microorganisms. 10, 9, 27 p., 1717.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs

    Li, Xuan Ji, Rensing, C., Vestergaard, G., Arumugam, Mani, Nesme, Joseph, Gupta, S., Brejnrod, A. D. & Sørensen, Søren Johannes, 2022, In: Environment International. 158, 10 p., 106899.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Quantification and fate of plasmid-specific bacteriophages in wastewater: Beyond the F-coliphages

    He, Z., Parra, B., Nesme, Joseph, Smets, B. F. & Dechesne, A., 2022, In: Water Research. 227, 8 p., 119320.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. 2021
  23. Published

    Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes

    Pinilla Redondo, Rafael, Olesen, Asmus Kalckar, Russel, J., de Vries, L. E., Christensen, L. D., Musovic, S., Nesme, Joseph & Sørensen, Søren Johannes, 2021, In: mBio. 12, 6, 13 p., e0306821.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.

    Singh, N. K., Lavire, C., Nesme, Joseph, Vial, L., Nesme, X., Mason, C. E., Lassalle, F. & Venkateswaran, K., 2021, In: Frontiers in Microbiology. 12, 15 p., 765943.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories

    Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments

    Hassoun-Kheir, N., Stabholz, Y., Kreft, J-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J., Hough, R. & 1 others, Paul, M., 2021, In: One Health. 13, 9 p., 100339.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

    Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

    Li, L., Nesme, Joseph, Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture

    Tabacchioni, S., Passato, S., Ambrosino, P., Huang, L., Caldara, M., Cantale, C., Hett, J., Del Fiore, A., Fiore, A., Schlüter, A., Sczyrba, A., Maestri, E., Marmiroli, N., Neuhoff, D., Nesme, J., Sørensen, S. J., Aprea, G., Nobili, C., Presenti, O., Giovannetti, G. & 4 others, Giovannetti, C., Pihlanto, A., Brunori, A. & Bevivino, A., 2021, In: Microorganisms. 9, 2, 23 p., 426.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Impact of Long-Term Organic and Mineral Fertilization on Rhizosphere Metabolites, Root–Microbial Interactions and Plant Health of Lettuce

    Windisch, S., Sommermann, L., Babin, D., Chowdhury, S. P., Grosch, R., Moradtalab, N., Walker, F., Höglinger, B., El-Hasan, A., Armbruster, W., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Geistlinger, J., Smalla, K., Rothballer, M., Ludewig, U. & Neumann, G., 2021, In: Frontiers in Microbiology. 11, 26 p., 597745.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Importance of microbial communities at the root-soil interface for extracellular polymeric substances and soil aggregation in semiarid grasslands

    Bettermann, A., Zethof, J. H. T., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K., Smalla, K. & Vogel, C., 2021, In: Soil Biology & Biochemistry. 159, 14 p., 108301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis

    Stefanic, P., Belcijan, K., Kraigher, B., Kostanjšek, R., Nesme, Joseph, Madsen, Jonas Stenløkke, Kovac, J., Sørensen, Søren Johannes, Vos, M. & Mandic-Mulec, I., 2021, In: Nature Communications. 12, 11 p., 3457.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms

    Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems

    Cerecetto, V., Smalla, K., Nesme, Joseph, Garaycochea, S., Fresia, P., Sørensen, Søren Johannes, Babin, D. & Leoni, C., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab023.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis

    Balbín-Suárez, A., Jacquiod, S., Rohr, A. D., Liu, B., Flachowsky, H., Winkelmann, T., Beerhues, L., Nesme, Joseph, Sørensen, Søren Johannes, Vetterlein, D. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 4, 14 p., fiab031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles

    Meisner, A., Snoek, B. L., Nesme, Joseph, Dent, E., Jacquiod, S., Classen, A. T. & Priemé, Anders, 2021, In: The ISME Journal. 15, 4, p. 1207-1221 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. 2020
  38. Published

    Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms

    Schierstaedt, J., Jechalke, S., Nesme, Joseph, Neuhaus, K., Sørensen, Søren Johannes, Grosch, R., Smalla, K. & Schikora, A., 2020, In: Environmental Microbiology. 22, 7, p. 2639-2652 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus

    Zadel, U., Nesme, Joseph, Michalke, B., Vestergaard, G., Płaza, G. A., Schröder, P., Radl, V. & Schloter, M., 2020, In: Science of the Total Environment. 711, 10 p., 134433.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review

    Hassoun-Kheir, N., Stabholz, Y., Kreft, J., de la Cruz, R., Romalde, J. L., Nesme, Joseph, Sørensen, Søren Johannes, Smets, B. F., Graham, D. & Paul, M., 2020, In: Science of the Total Environment. 743, 11 p., 140804.

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    Composted sewage sludge influences the microbiome and persistence of human pathogens in soil

    Major, N., Schierstaedt, J., Jechalke, S., Nesme, Joseph, Ban, S. G., Černe, M., Sørensen, Søren Johannes, Ban, D. & Schikora, A., 2020, In: Microorganisms. 8, 7, 14 p., 1020.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures

    Kang, D., Jacquiod, S., Herschend, J., Wei, S., Nesme, Joseph & Sørensen, Søren Johannes, 2020, In: Frontiers in Microbiology. 10, 10 p., 3010.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Metal-induced bacterial interactions promote diversity in river-sediment microbiomes

    Cyriaque, V., Géron, A., Billon, G., Nesme, Joseph, Werner, J., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: F E M S Microbiology Ecology. 96, 6, 12 p., fiaa076.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes

    Li, L., Dechesne, A., Madsen, Jonas Stenløkke, Nesme, Joseph, Sørensen, Søren Johannes & Smets, B. F., 2020, In: I S M E Journal. 14, 5, p. 1170-1181 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands

    Zethof, J. H. T., Bettermann, A., Vogel, C., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Woche, S. K., Sørensen, Søren Johannes, Smalla, K. & Kalbitz, K., 2020, In: Frontiers in Environmental Science. 8, 19 p., 51.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites

    Yim, B., Baumann, A., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Zühlke, S., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Horticulture Research. 7, 16 p., 144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Rose replant disease: detailed analyses of plant reactions, root endophytes and rhizosphere microbial communities

    Baumann, A., Yim, B., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Acta Horticulturae. 1283, p. 97-104 8 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  48. 2019
  49. Published

    Characterization of Extracellular Biosurfactants Expressed by a Pseudomonas putida Strain Isolated from the Interior of Healthy Roots from Sida hermaphrodita Grown in a Heavy Metal Contaminated Soil

    Bernat, P., Nesme, Joseph, Paraszkiewicz, K., Schloter, M. & Płaza, G., 2019, In: Current Microbiology. 76, 11, p. 1320-1329 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems

    Romero, I. A., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes & Romero, E., 2019, In: Science of the Total Environment. 691, p. 749-759 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus

    Sáenz, J. S., Marques, T. V., Barone, R. S. C., Cyrino, J. E. P., Kublik, S., Nesme, Joseph, Schloter, M., Rath, S. & Vestergaard, G., 2019, In: Microbiome. 7, p. 1-14 24.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. 2018
  54. Published

    Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community

    Li, L., Dechesne, A., He, Z., Madsen, Jonas Stenløkke, Nesme, Joseph, Sørensen, Søren Johannes & Smets, B. F., 8 May 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265 6 p.

    Research output: Contribution to journal › Letter › Research › peer-review

ID: 178764926