Karsten Kristiansen

Integrative genetic and single cell RNA sequencing analysis provides new clues to the amyotrophic lateral sclerosis neurodegeneration

Liu, H., Guan, Liping, Deng, M., Bolund, L., Kristiansen, Karsten, Zhang, J., Luo, Y. & Zhang, Z., 2023, In: Frontiers in Neuroscience. 17, 10 p., 1116087.

Research output: Contribution to journal › Journal article › peer-review

Sex differences in the oral microbiome, host traits, and their causal relationships

Liu, X., Tong, X., Jie, Zhuye, Zhu, J., Tian, L., Sun, Q., Ju, Y., Zou, L., Lu, H., Qiu, X., Li, Q., Liao, Y., Lian, H., Zuo, Y., Chen, X., Rao, W., Ren, Y., Wang, Y., Zi, J., Wang, R., Xu, X., Yang, H., Wang, J., Zong, Y., Liu, W., Hou, Y., Jin, X., Xiao, L., Kristiansen, Karsten, Jia, H. & Zhang, T., 2023, In: iScience. 26, 1, 23 p., 105839.

Research output: Contribution to journal › Journal article › peer-review

Genome sequence and genomic analysis of liver abscess caused by hypervirulent Klebsiella pneumoniae

Pei, N., Liu, X., Jian, Z., Yan, Q., Liu, Q., Kristiansen, Karsten, Li, J. & Liu, W., 2023, In: 3 Biotech. 13, 3, 7 p., 76.

Research output: Contribution to journal › Journal article › peer-review

Co-diversification of an intestinal Mycoplasma and its salmonid host

Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, (E-pub ahead of print) In: ISME Journal.

Research output: Contribution to journal › Journal article › peer-review

Epigenetic Regulation of Driver Genes in Testicular Tumorigenesis

von Eyben, F. E., Kristiansen, Karsten, Kapp, D. S., Hu, R., Preda, O. & Nogales, F. F., 2023, In: International Journal of Molecular Sciences. 24, 4, 28 p., 4148.

Research output: Contribution to journal › Review › peer-review

Distinct Functional Metagenomic Markers Predict the Responsiveness to Anti-PD-1 Therapy in Chinese Non-Small Cell Lung Cancer Patients

Fang, Chao, Fang, W., Xu, L., Gao, F., Hou, Y., Zou, H., Ma, Y., Moll, J. M., Yang, Y., Wang, D., Huang, Y., Ren, H., Zhao, H., Qin, S., Zhong, H., Li, J., Liu, S., Yang, H., Wang, J., Brix, S., Kristiansen, Karsten & Zhang, L., 2022, In: Frontiers in Oncology. 12, 13 p., 837525.

Research output: Contribution to journal › Journal article › peer-review

Maternal gut microbiota during pregnancy and the composition of immune cells in infancy

Gao, Y., O'Hely, M., Quinn, T. P., Ponsonby, A., Harrison, L. C., Frøkiær, Hanne, Tang, M. L. K., Brix, S., Kristiansen, Karsten, Burgner, D., Saffery, R., Ranganathan, S., Collier, F., Vuillermin, P. & BIS Investigator Grp, B. I. G., 2022, In: Frontiers in Immunology. 13, 11 p., 986340.

Research output: Contribution to journal › Journal article › peer-review

Chromosome-scale assembly and whole-genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets

Han, L., Lan, T., Li, D., Li, H., Deng, L., Peng, Z., He, S., Zhou, Y., Han, R., Li, L., Lu, Y., Lu, H., Wang, Q., Yang, S., Zhu, Y., Huang, Y., Cheng, X., Yu, J., Wang, Y., Sun, H., Chai, H., Yang, H., Xu, X., Lisby, Michael, Liu, Q., Kristiansen, Karsten, Liu, Huan & Hou, Z., 2022, In: Molecular Ecology Resources. 22, 2, p. 768-785 18 p.

Research output: Contribution to journal › Journal article › peer-review

Profiling the Atopic Dermatitis Epidermal Transcriptome by Tape Stripping and BRB-seq

Hu, T., Todberg, T., Andersen, D., Danneskiold-Samsøe, Niels Banhos, Hansen, Sofie Boesgaard Neestrup, Kristiansen, Karsten, Ewald, D. A., Brix, S., da Rosa, J. C., Hoof, I., Skov, Lone & Litman, Thomas, 2022, In: International Journal of Molecular Sciences. 23, 11, 12 p., 6140.

Research output: Contribution to journal › Journal article › peer-review

Sequencing introduced false positive rare taxa lead to biased microbial community diversity, assembly, and interaction interpretation in amplicon studies

Jia, Y., Zhao, S., Guo, W., Peng, L., Zhao, F., Wang, L., Fan, G., Zhu, Y., Xu, D., Liu, G., Wang, R., Fang, X., Zhang, H., Kristiansen, Karsten, Zhang, W. & Chen, J., 2022, In: Environmental Microbiomes. 17, 18 p., 43.

Research output: Contribution to journal › Journal article › peer-review

A pilot study of assessing whole genome sequencing in newborn screening in unselected children in China

Jian, M., Wang, X., Sui, Y., Fang, M., Feng, C., Huang, Y., Liu, C., Guo, R., Guan, Y., Gao, Y., Wang, Z., Li, S., Cheng, B., Sun, L., Cui, F., Guo, J., Zhan, Y., Zhang, G., Zheng, L., Su, F., Xue, W., Qian, P., Gao, S., Chen, J., Guan, L., Lu, H., Kristiansen, Karsten, Jin, X., Chen, F., Zhao, Y., Hammarström, L., Jiang, X., Liu, J. & Gao, Y., 2022, In: Clinical and Translational Medicine. 12, 6, 12 p., e843.

Research output: Contribution to journal › Comment/debate › peer-review

Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes

Jie, Zhuye, Chen, Chen, Hao, L., Li, F., Song, L., Zhang, X., Zhu, J., Tian, L., Tong, X., Cai, K., Zhang, Z., Ju, Y., Yu, X., Li, Y., Zhou, H., Lu, H., Qiu, X., Li, Q., Liao, Y., Zhou, D., Lian, H., Zuo, Y., Chen, X., Rao, W., Ren, Y., Wang, Y., Zi, J., Wang, R., Liu, N., Wu, J., Zhang, W., Liu, X., Zong, Y., Liu, W., Xiao, L., Hou, Y., Xu, X., Yang, H., Wang, J., Kristiansen, Karsten & Jia, H., 2022, In: Genomics, Proteomics and Bioinformatics. 20, 2, p. 304-321 18 p.

Research output: Contribution to journal › Journal article › peer-review

Response to: "Correspondence on "Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: An exploratory randomised placebo-controlled trial'' by McGonagle et al

Kragsnaes, M. S., Kjeldsen, J., Horn, H. C., Munk, H. L., Pedersen, J. K., Just, S. A., Ahlquist, P., Davidsen, J. R., Nilsson, A. C., Röttger, R., Kruhøffer, M., Marchesi, J. R., Kristiansen, Karsten, Christensen, R. & Ellingsen, T., 2022, (E-pub ahead of print) In: Annals of the Rheumatic Diseases. 2 p.

Research output: Contribution to journal › Comment/debate

Multi-omics analyses of serum metabolome, gut microbiome and brain function reveal dysregulated microbiota-gut-brain axis in bipolar depression

Li, Z., Lai, J., Zhang, P., Ding, J., Jiang, J., Liu, C., Huang, H., Zhen, H., Xi, C., Sun, Y., Wu, L., Wang, L., Gao, X., Li, Y., Fu, Y., Jie, Z., Li, S., Zhang, D., Chen, Y., Zhu, Y., Lu, S., Lu, J., Wang, D., Zhou, H., Yuan, X., Li, X., Pang, L., Huang, M., Yang, H., Zhang, W., Brix, S., Kristiansen, Karsten, Song, X., Nie, C. & Hu, S., 2022, In: Molecular Psychiatry. 27, 1, 13 p.

Research output: Contribution to journal › Journal article › peer-review

Genome-wide association study of Klebsiella pneumoniae identifies variations linked to carbapenems resistance

Pei, N., Sun, W., He, J., Li, Y., Chen, X., Liang, T., Kristiansen, Karsten, Liu, W. & Li, J., 2022, In: Frontiers in Microbiology. 13, 11 p., 997769.

Research output: Contribution to journal › Journal article › peer-review

Large-Scale Genomic Epidemiology of Klebsiella pneumoniae Identified Clone Divergence with Hypervirulent Plus Antimicrobial-Resistant Characteristics Causing Within-Ward Strain Transmissions

Pei, N., Li, Y., Liu, C., Jian, Z., Liang, T., Zhong, Y., Sun, W., He, J., Cheng, X., Li, H., Lei, X., Liu, X., Deng, Z., Liu, Q., Chen, X., Yan, Q., Kristiansen, Karsten, Li, J. & Liu, W., 2022, In: Microbiology Spectrum. 10, 2, 14 p., e02698-21.

Research output: Contribution to journal › Journal article › peer-review

A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

Research output: Contribution to journal › Journal article › peer-review

Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)

Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Jørgensen, Louise von Gersdorff, Forberg, T., Zuo, S., Kania, Per, Buchmann, Kurt, Kristiansen, Karsten, Bojesen, Anders Miki & Limborg, Morten Tønsberg, 2022, In: Journal of Applied Microbiology. 132, 4, p. 3201-3216 16 p.

Research output: Contribution to journal › Journal article › peer-review

Pot-pollen supplementation reduces fasting glucose and modulates the gut microbiota in high-fat/high-sucrose fed C57BL/6 mice

Rebelo, K. S., Nunez, C. E. C., Cazarin, C. B. B., Maróstica Júnior, M. R., Kristiansen, Karsten & Danneskiold-Samsøe, Niels Banhos, 2022, In: Food & Function. 13, 7, p. 3982-3992 11 p.

Research output: Contribution to journal › Journal article › peer-review

The FASTQ+ format and PISA

Shi, Quan, Liu, S., Kristiansen, Karsten & Liu, L., 2022, In: Bioinformatics. 38, 19, p. 4639-4642 4 p.

Research output: Contribution to journal › Journal article › peer-review

Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome

Thompson, K. N., Oulhote, Y., Weihe, P., Wilkinson, J. E., Ma, S., Zhong, H., Li, J., Kristiansen, Karsten, Huttenhower, C. & Grandjean, P., 2022, In: Environmental Science & Technology. 56, 23, p. 16985-16995 11 p.

Research output: Contribution to journal › Journal article › peer-review

Whole-genome sequence of the planarian Dugesia japonica combining Illumina and PacBio data

Tian, Q., Guo, Q., Guo, Y., Luo, L., Kristiansen, Karsten, Han, Z., Fang, H. & Zhang, S., 2022, In: Genomics. 114, 2, 10 p., 110293.

Research output: Contribution to journal › Journal article › peer-review

In vitro digestion mimicking conditions in young and elderly reveals marked differences between profiles and potential bioactivity of peptides from meat and soy proteins

Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Food Research International. 157, 11 p., 111215.

Research output: Contribution to journal › Journal article › peer-review

Effect of gastrointestinal alterations mimicking elderly conditions on in vitro digestion of meat and soy proteins

Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Food Chemistry. 383, 9 p., 132465.

Research output: Contribution to journal › Journal article › peer-review

Proteomic Analysis of the Protective Effect of Eriodictyol on Benzo(a)pyrene-Induced Caco-2 Cytotoxicity

Wang, Chong, Zhao, Fan, Bai, Y., Li, C., Xu, X., Kristiansen, Karsten & Zhou, G., 2022, In: Frontiers in Nutrition. 9, 14 p., 839364.

Research output: Contribution to journal › Journal article › peer-review

Chord: an ensemble machine learning algorithm to identify doublets in single-cell RNA sequencing data

Xiong, K., Zhou, H., Lin, C., Yin, J., Kristiansen, Karsten, Yang, H. & Li, G., 2022, In: Communications Biology . 5, 11 p., 510.

Research output: Contribution to journal › Journal article › peer-review

Genomic and microbial factors affect the prognosis of anti-pd-1 immunotherapy in nasopharyngeal carcinoma

Xu, L., Ma, Y., Fang, Chao, Peng, Z., Gao, F., Moll, J. M., Qin, S., Yu, Q., Hou, Y., Kristiansen, Karsten, Fang, W., Brix, S. & Zhang, L., 2022, In: Frontiers in Oncology. 12, 11 p., 953884.

Research output: Contribution to journal › Journal article › peer-review

Casein and red meat proteins differentially affect the composition of the gut microbiota in weaning rats

Zhao, Fan, Wang, Chong, Song, S., Fang, C., Zhou, G., Li, C. & Kristiansen, Karsten, 2022, In: Food Chemistry. 397, 11 p., 133769.

Research output: Contribution to journal › Journal article › peer-review

Effects of Different Storage Temperatures on Bacterial Communities and Functional Potential in Pork Meat

Zhao, Fan, Wei, Z., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Foods. 11, 15, 12 p., 2307.

Research output: Contribution to journal › Journal article › peer-review

Intake of a Chicken Protein-Based or Soy Protein-Based Diet Differentially Affects Growth Performance, Absorptive Capacity, and Gut Microbiota in Young Rats

Zhao, Fan, Wang, Chong, Song, S., Fang, C., Kristiansen, Karsten & Li, C., 2022, In: Molecular Nutrition and Food Research. 66, 13, 14 p., 2101124.

Research output: Contribution to journal › Journal article › peer-review

Proteomics and Metabolomics Profiling of Pork Exudate Reveals Meat Spoilage during Storage

Zhao, Fan, Wei, Z., Bai, Y., Li, C., Zhou, G., Kristiansen, Karsten & Wang, Chong, 2022, In: Metabolites. 12, 7, 15 p., 570.

Research output: Contribution to journal › Journal article › peer-review

Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa

Zhu, J., Tian, L., Chen, P., Han, M., Song, L., Tong, X., Sun, X., Yang, F., Lin, Z., Liu, X., Liu, C., Wang, X., Lin, Y., Cai, K., Hou, Y., Xu, X., Yang, H., Wang, J., Kristiansen, Karsten, Xiao, L., Zhang, T., Jia, H. & Jie, Zhuye, 2022, In: Genomics, Proteomics and Bioinformatics. 20, 2, p. 246-259

Research output: Contribution to journal › Journal article › peer-review

Systems-wide effects of short-term feed deprivation in obese mice

Andersen, D., Roager, Henrik Munch, Zhang, L., Moll, J. M., Frandsen, H. L., Danneskiold-Samsøe, Niels Banhos, Hansen, Axel Kornerup, Kristiansen, Karsten, Licht, T. R. & Brix, Susanne, 2021, In: Scientific Reports. 11, 11 p., 5716.

Research output: Contribution to journal › Journal article › peer-review

Small Intestinal Tuft Cell Activity Associates With Energy Metabolism in Diet-Induced Obesity

Arora, P., Andersen, D., Moll, J. M., Danneskiold-Samsøe, Niels Banhos, Xu, L., Zhou, B., Kladis, G., Rausch, P., Workman, C. T., Kristiansen, Karsten & Brix, S., 2021, In: Frontiers in Immunology. 12, 13 p., 629391.

Research output: Contribution to journal › Journal article › peer-review

Cervicovaginal microbiome dynamics after taking oral probiotics

Chen, Chen, Hao, L., Zhang, Z., Tian, L., Zhang, X., Zhu, J., Jie, Zhuye, Tong, X., Xiao, L., Zhang, T., Jin, X., Xu, X., Yang, H., Wang, J., Kristiansen, Karsten & Jia, H., 2021, In: Journal of Genetics and Genomics. 48, 8, p. 716-726 11 p.

Research output: Contribution to journal › Journal article › peer-review

Maternal prenatal gut microbiota composition predicts child behaviour

Dawson, S. L., O'Hely, M., Jacka, F. N., Ponsonby, A., Symeonides, C., Loughman, A., Collier, F., Moreno-Betancur, M., Sly, P., Burgner, D., Tang, M. L. K., Saffery, R., Ranganathan, S., Conlon, M. A., Harrison, L. C., Brix, S., Kristiansen, Karsten, Vuillermin, P. & the BIS Investigator Group, T. B. I. G., 2021, In: EBioMedicine. 68, 10 p., 103400.

Research output: Contribution to journal › Journal article › peer-review

The maternal gut microbiome during pregnancy and offspring allergy and asthma

Gao, Y., Nanan, R., Macia, L., Tan, J., Sominsky, L., Quinn, T. P., O'Hely, M., Ponsonby, A., Tang, M. L. K., Collier, F., Strickland, D. H., Dhar, P., Brix, S., Phipps, S., Sly, P. D., Ranganathan, S., Stokholm, Jakob, Kristiansen, Karsten, Gray, L. E. K. & Vuillermin, P., 2021, In: Journal of Allergy and Clinical Immunology. 148, 3, p. 669-678

Research output: Contribution to journal › Journal article › peer-review

Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda

Guang, X., Lan, T., Wan, Q. H., Huang, Y., Li, H., Zhang, M., Li, R., Zhang, Z., Lei, Y., Zhang, L., Zhang, H., Li, D., Li, Xiaoping, Li, H., Xu, Y., Qiao, M., Wu, D., Tang, K., Zhao, P., Lin, J., Sahu, S. K., Liang, Q., Jiang, W., Zhang, D., Xu, X., Liu, X., Lisby, Michael, Yang, H., Kristiansen, Karsten, Liu, Huan & Fang, S., 2021, In: Science Bulletin. 66, 19, p. 2002-2013 12 p.

Research output: Contribution to journal › Journal article › peer-review

Adipose MDM2 regulates systemic insulin sensitivity

Hallenborg, P., Jensen, Benjamin Anderschou Holbech, Fjære, E., Petersen, R. K., Belmaâti, M. S., Rasmussen, S. S., Gunnarsson, J. P., Lauritzen, P., Cheng, K. K. Y., Hermansson, M., Sonne, S. B., Ejsing, C. S., Xu, A., Kratchmarova, I., Krüger, M., Madsen, Lise, Kristiansen, Karsten & Blagoev, B., 2021, In: Scientific Reports. 11, 17 p., 21839.

Research output: Contribution to journal › Journal article › peer-review

A porcine brain-wide RNA editing landscape

Huang, J., Lin, L., Dong, Z., Yang, L., Zheng, T., Gu, W., Zhang, Y., Yin, T., Sjöstedt, E., Mulder, J., Uhlén, M., Kristiansen, Karsten, Bolund, L. & Luo, Y., 2021, In: Communications Biology . 4, 12 p., 717.

Research output: Contribution to journal › Journal article › peer-review

Lysates of Methylococcus capsulatus Bath induce a lean-like microbiota, intestinal FoxP3⁺RORγt⁺IL-17⁺ Tregs and improve metabolism

Jensen, Benjamin Anderschou Holbech, Holm, J. B., Larsen, I. S., von Burg, N., Derer, S., Sonne, S. B., Pærregaard, S. I., Damgaard, Mads Vargas, Indrelid, S. A., Rivollier, A., Agrinier, A. L., Sulek, K., Arnoldussen, Y. J., Fjære, E., Marette, A., Angell, I. L., Rudi, K., Treebak, Jonas Thue, Madsen, Lise, Åkesson, C. P., Agace, W., Sina, C., Kleiveland, C. R., Kristiansen, Karsten & Lea, T. E., 2021, In: Nature Communications. 12, 19 p., 1093.

Research output: Contribution to journal › Journal article › peer-review

A transomic cohort as a reference point for promoting a healthy human gut microbiome

Jie, Zhuye, Liang, S., Ding, Q., Li, F., Tang, S., Wang, D., Lin, Y., Chen, P., Cai, K., Qiu, X., Li, Q., Liao, Y., Zhou, D., Lian, H., Zuo, Y., Chen, X., Rao, W., Ren, Y., Wang, Y., Zi, J., Wang, R., Zhou, H., Lu, H., Wang, X., Zhang, W., Zhang, T., Xiao, L., Zong, Y., Liu, W., Yang, H., Wang, J., Hou, Y., Liu, X., Kristiansen, Karsten, Zhong, H., Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 8, 10 p., 100039.

Research output: Contribution to journal › Journal article › peer-review

Dairy consumption and physical fitness tests associated with fecal microbiome in a Chinese cohort

Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Wang, X., Zhang, T., Zhou, H., Lu, H., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 9 p., 100038.

Research output: Contribution to journal › Journal article › peer-review

Disease trends in a young Chinese cohort according to fecal metagenome and plasma metabolites

Jie, Zhuye, Liang, S., Ding, Q., Li, F., Sun, X., Lin, Y., Chen, P., Cai, K., Zhou, H., Lu, H., Wang, X., Zhang, T., Xiao, L., Yang, H., Wang, J., Hou, Y., Kristiansen, Karsten, Jia, H. & Xu, X., 2021, In: Medicine in Microecology. 9, 10 p., 100037.

Research output: Contribution to journal › Journal article › peer-review

The Baseline Gut Microbiota Directs Dieting-Induced Weight Loss Trajectories

Jie, Zhuye, Yu, X., Liu, Y., Sun, L., Chen, P., Ding, Q., Gao, Y., Zhang, X., Yu, M., Liu, Y., Zhang, Yong, Kristiansen, Karsten, Jia, H., Brix, S. & Cai, K., 2021, In: Gastroenterology. 160, 6, p. 2029-2042, e1-e16

Research output: Contribution to journal › Journal article › peer-review

Safety and efficacy of faecal microbiota transplantation for active peripheral psoriatic arthritis: An exploratory randomised placebo-controlled trial

Kragsnaes, M. S., Kjeldsen, J., Horn, H. C., Munk, H. L., Pedersen, J. K., Just, S. A., Ahlquist, P., Pedersen, F. M., de Wit, M., Möller, S., Andersen, V., Kristiansen, Karsten, Kinggaard Holm, D., Holt, H. M., Christensen, R. & Ellingsen, T., 2021, In: Annals of the Rheumatic Diseases. 80, 9, p. 1158-1167 10 p.

Research output: Contribution to journal › Journal article › peer-review

Network of Interactions Between Gut Microbiome, Host Biomarkers, and Urine Metabolome in Carotid Atherosclerosis

Li, R., Jie, Z., Feng, Q., Fang, R., Li, F., Gao, Y., Xia, H., Zhong, H., Tong, B., Madsen, Lise, Zhang, J., Liu, C., Xu, Z., Wang, J., Yang, H., Xu, X., Hou, Y., Brix, S., Kristiansen, Karsten, Yu, X., Jia, H. & He, K., 2021, In: Frontiers in Cellular and Infection Microbiology. 11, 12 p., 708088.

Research output: Contribution to journal › Journal article › peer-review

Characterization of the human skin resistome and identification of two microbiota cutotypes

Li, Z., Xia, J., Jiang, L., Tan, Y., An, Y., Zhu, X., Ruan, J., Chen, Z., Zhen, H., Ma, Y., Jie, Z., Xiao, L., Yang, H., Wang, J., Kristiansen, Karsten, Xu, X., Jin, L., Nie, C., Krutmann, J., Liu, X. & Wang, J., 2021, In: Microbiome. 9, 18 p., 47.

Research output: Contribution to journal › Journal article › peer-review

A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases

Liu, X., Tang, S., Zhong, H., Tong, X., Jie, Zhuye, Ding, Q., Wang, D., Guo, R., Xiao, L., Xu, X., Yang, H., Wang, J., Zong, Y., Liu, W., Liu, X., Zhang, Yong, Brix, S., Kristiansen, Karsten, Hou, Y., Jia, H. & Zhang, T., 2021, In: Cell Discovery. 7, 15 p., 9.

Research output: Contribution to journal › Journal article › peer-review

Gut Microbiota Perturbation in IgA Deficiency Is Influenced by IgA-Autoantibody Status

Moll, J. M., Myers, P. N., Zhang, C., Eriksen, C., Wolf, J., Appelberg, K. S., Lindberg, G., Bahl, M. I., Zhao, H., Pan-Hammarström, Q., Cai, K., Jia, H., Borte, S., Nielsen, H. B., Kristiansen, Karsten, Brix, S. & Hammarström, L., 2021, In: Gastroenterology. 160, 7, p. 2423-2434.e5

Research output: Contribution to journal › Journal article › peer-review

Longitudinal Study of the Drug Resistance in Klebsiella pneumoniae of a Tertiary Hospital, China: Phenotypic Epidemiology Analysis (2013-2018)

Pei, N., Liu, Q., Cheng, X., Liang, T., Jian, Z., Wang, S., Zhong, Y., He, J., Zhou, M., Kristiansen, Karsten, Chen, W., Liu, W. & Li, J., 2021, In: Infection and Drug Resistance. 14, p. 613-626 14 p.

Research output: Contribution to journal › Journal article › peer-review

Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

Research output: Contribution to journal › Journal article › peer-review

Nutritional composition and bioactive compounds of Melipona seminigra pot-pollen from Amazonas, Brazil

Rebelo, K. S., Cazarin, C. B. B., Iglesias, A. H., Stahl, M. A., Kristiansen, Karsten, Carvalho-Zilse, G. A., Grimaldi, R., Reyes, F. G. R., Danneskiold-Samsøe, Niels Banhos & Júnior, M. R. M., 2021, In: Journal of the Science of Food and Agriculture. 101, 12, p. 4907-4915 9 p.

Research output: Contribution to journal › Journal article › peer-review

Developmental trajectory of the healthy human gut microbiota during the first 5 years of life

Roswall, J., Olsson, L. M., Kovatcheva-Datchary, P., Nilsson, S., Tremaroli, V., Simon, M., Kiilerich, P., Akrami, R., Kramer, M., Uhlen, M., Gummesson, A., Kristiansen, Karsten, Dahlgren, J. & Bäckhed, F., 2021, In: Cell Host & Microbe. 29, 5, p. 765-776.e3 15 p.

Research output: Contribution to journal › Journal article › peer-review

Status and perspectives of biomarker validation for diagnosis, stratification, and treatment

Skov, J., Kristiansen, Karsten, Jespersen, J. & Olesen, P., 2021, In: Public Health. 190, p. 173-175 3 p.

Research output: Contribution to journal › Letter › peer-review

An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data

Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, T. & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.

Research output: Contribution to journal › Journal article › peer-review

Sex- and age-related trajectories of the adult human gut microbiota shared across populations of different ethnicities

Zhang, X., Zhong, H., Li, Y., Shi, Z., Ren, H., Zhang, Z., Zhou, X., Tang, S., Han, X., Lin, Y., Yang, F., Wang, D., Fang, Chao, Fu, Z., Wang, L., Zhu, S., Hou, Y., Xu, X., Yang, H., Wang, J., Kristiansen, Karsten, Li, J. & Ji, L., 2021, In: Nature Aging. 1, 1, p. 87-100 14 p.

Research output: Contribution to journal › Journal article › peer-review

Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients

Zhong, H., Wang, Y., Shi, Z., Zhang, L., Ren, H., He, W., Zhang, Z., Zhu, A., Zhao, J., Xiao, F., Yang, F., Liang, T., Ye, F., Zhong, B., Ruan, S., Gan, M., Zhu, J., Li, F., Li, F., Wang, D., Li, J., Ren, P., Zhu, S., Yang, H., Wang, J., Kristiansen, Karsten, Tun, H. M., Chen, W., Zhong, N., Xu, X., Li, Y., Li, J. & Zhao, J., 2021, In: Cell Discovery. 7, 14 p., 23.

Research output: Contribution to journal › Journal article › peer-review

An Expanded Gene Catalog of Mouse Gut Metagenomes

Zhu, J., Ren, H., Zhong, H., Li, Xiaoping, Zou, Y., Han, M., Li, M., Madsen, Lise, Kristiansen, Karsten & Xiao, L., 2021, In: mSphere. 6, 1, 12 p., e-01119-20.

Research output: Contribution to journal › Journal article › peer-review

Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces

Zou, Y., Lin, X., Xue, W., Tuo, L., Chen, M., Chen, X., Sun, C., Li, F., Liu, S., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Scientific Reports. 11, 13 p., 11340.

Research output: Contribution to journal › Journal article › peer-review

Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut

Zou, Y., Xue, W., Lin, X., Hu, T., Liu, S., Sun, C., Luo, G., Lv, M., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Frontiers in Microbiology. 12, 13 p., 632361.

Research output: Contribution to journal › Journal article › peer-review

Body fluid from the parasitic worm Ascaris suum inhibits broad-acting pro-inflammatory programs in dendritic cells

Arora, P., Moll, J. M., Andersen, D., Workman, C. T., Williams, Andrew Richard, Kristiansen, Karsten & Brix, S., 2020, In: Immunology. 159, 3, p. 322-334

Research output: Contribution to journal › Journal article › peer-review

Clinical characteristics of the BREATHE cohort: a real-life study on patients with asthma and COPD

Backer, Vibeke, Klein, D. K., Bodtger, U., Romberg, K., Porsbjerg, Celeste Michala, Erjefält, J. S., Kristiansen, Karsten, Xu, R., Silberbrandt, A., Frøssing, L., Hvidtfeldt, M., Obling, N., Jarenbäck, L., Nasr, A., Tufvesson, E., Mori, M., Winther-Jensen, M., Karlsson, L., Nihlén, U., Flintegaard, T. V. & Bjermer, L., 2020, In: European Clinical Respiratory Journal. 7, 1, 11 p., 1736934.

Research output: Contribution to journal › Journal article › peer-review

The anti-obesogenic effect of lean fish species is influenced by the fatty acid composition in fish fillets

Fjære, E., Myrmel, L. S., Dybing, K., Kuda, O., Jensen, Benjamin Anderschou Holbech, Rossmeisl, M., Frøyland, L., Kristiansen, Karsten & Madsen, L., 2020, In: Nutrients. 12, 10, 18 p., 3038.

Research output: Contribution to journal › Journal article › peer-review

A Chromosome-Level Genome Assembly of Dendrobium Huoshanense Using Long Reads and Hi-C Data

Han, B., Jing, Y., Dai, J., Zheng, T., Gu, F., Zhao, Q., Zhu, F., Song, X., Deng, H., Wei, P., Song, C., Liu, D., Jiang, X., Wang, F., Chen, Y., Sun, C., Yao, H., Zhang, L., Chen, N., Chen, S., Li, X., Wei, Y., Ouyang, Z., Yan, H., Lu, J., Wang, H., Guo, L., Kong, L., Zhao, J., Li, S., Luo, L., Kristiansen, Karsten, Feng, Z., Sun, S., Chen, C., Yue, Z. & Chen, N., 2020, In: Genome Biology and Evolution. 12, 12, p. 2486-2490 5 p.

Research output: Contribution to journal › Journal article › peer-review

Pretreatment Prevotella-to-Bacteroides ratio and markers of glucose metabolism as prognostic markers for dietary weight loss maintenance

Hjorth, Mads Fiil, Christensen, Lars, Kjølbæk, Louise, Larsen, L. H., Roager, Henrik Munch, Kiilerich, P., Kristiansen, Karsten & Astrup, A., 2020, In: European Journal of Clinical Nutrition. 74, 2, p. 338-347 10 p.

Research output: Contribution to journal › Journal article › peer-review

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Li, J., Zhong, H., Ramayo-Caldas, Y., Terrapon, N., Lombard, V., Potocki-Veronese, G., Estellé, J., Popova, M., Yang, Z., Zhang, H., Li, F., Tang, S., Yang, F., Chen, W., Chen, B., Li, J., Guo, J., Martin, C., Maguin, E., Xu, X., Yang, H., Wang, J., Madsen, Lise, Kristiansen, Karsten, Henrissat, B., Ehrlich, S. D. & Morgavi, D. P., 2020, In: GigaScience. 9, 6, 15 p., giaa057.

Research output: Contribution to journal › Journal article › peer-review

Data integration for prediction of weight loss in randomized controlled dietary trials

Nielsen, R. L., Helenius, M., Garcia, Sara, Roager, Henrik Munch, Aytan-Aktug, D., Hansen, L. B. S., Lind, M. V., Vogt, J. K., Dalgaard, M. D., Bahl, M. I., Jensen, C. B., Muktupavela, Rasa Audange, Warinner, C., Aaskov, V., Gøbel, R., Kristensen, M. B., Frøkiær, Hanne, Sparholt, M. H., Christensen, A. F., Vestergaard, H., Hansen, Torben, Kristiansen, Karsten, Brix, Susanne, Petersen, T. N., Lauritzen, Lotte, Licht, T. R., Pedersen, Oluf Borbye & Gupta, R., 2020, In: Scientific Reports. 10, 15 p., 20103.

Research output: Contribution to journal › Journal article › peer-review

Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age

Padilha, M., Brejnrod, A., Danneskiold-Samsøe, Niels Banhos, Hoffmann, C., Iaucci, J. D. M., Cabral, V. P., Xavier-Santos, D., Taddei, C. R., Kristiansen, Karsten & Saad, S. M. I., 2020, In: Nutrients. 12, 4, 16 p., 1081.

Research output: Contribution to journal › Journal article › peer-review

Comparative Analysis of Sample Extraction and Library Construction for Shotgun Metagenomics

Peng, Z., Zhu, X., Wang, Z., Yan, X., Wang, G., Tang, M., Jiang, A. & Kristiansen, Karsten, 2020, In: Bioinformatics and Biology Insights. 14, 13 p.

Research output: Contribution to journal › Journal article › peer-review

Treatment with the anti-IgE monoclonal antibody omalizumab in women with asthma undergoing fertility treatment: a proof-of-concept study - The PRO-ART study protocol

Tidemandsen, C., Juul Gade, E., Ulrik, Charlotte Suppli, Nielsen, Henriette Svarre, Oxlund-Mariegaard, B. S., Kristiansen, Karsten, Freiesleben, Nina la Cour, Nøhr, B., Udengaard, H. & Backer, Vibeke, 2020, In: BMJ Open. 10, 11, 7 p., e037041.

Research output: Contribution to journal › Journal article › peer-review

Assessment of fecal DNA extraction protocols for metagenomic studies

Yang, F., Sun, J., Luo, H., Ren, H., Zhou, H., Lin, Y., Han, M., Chen, B., Liao, H., Brix, S., Li, J., Yang, H., Kristiansen, Karsten & Zhong, H., 2020, In: GigaScience. 9, 7, 12 p., giaa071.

Research output: Contribution to journal › Journal article › peer-review

The draft genome of mandrill (Mandrillus sphinx): an Old World monkey

Yin, Y., Yang, T., Liu, Huan, Huang, Z., Zhang, Y., Song, Y., Wang, W., Guang, X., Sahu, S. K. & Kristiansen, Karsten, 2020, In: Scientific Reports. 10, 8 p., 2431.

Research output: Contribution to journal › Journal article › peer-review

Reply to: Transformation of naked mole-rat cells

Zhao, J., Tian, X., Zhu, Y., Zhang, Z., Rydkina, E., Yuan, Y., Zhang, H., Roy, B., Cornwell, A., Nevo, E., Shang, X., Huang, R., Kristiansen, Karsten, Seluanov, A., Fang, X. & Gorbunova, V., 2020, In: Nature. 583, 7814, p. E8-E13

Research output: Contribution to journal › Letter › peer-review

Metagenome-wide association of gut microbiome features for schizophrenia

Zhu, F., Ju, Y., Wang, W., Wang, Q., Guo, R., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Feng, J., Guo, L., He, X., Chen, Y., Chen, C., Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, Lise, Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Nature Communications. 11, 10 p., 1612.

Research output: Contribution to journal › Journal article › peer-review

Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice

Zhu, F., Guo, R., Wang, W., Ju, Y., Wang, Q., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Liu, B., Guo, L., He, X., Chen, Y., Chen, C., Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, Lise, Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Molecular Psychiatry. 25, 11, p. 2905-2918 14 p.

Research output: Contribution to journal › Journal article › peer-review

Viral integration drives multifocal HCC during the occult HBV infection

Chen, X., Long, X., Jia, W., Wu, H., Zhao, J., Liang, H., Laurence, A., Zhu, J., Dong, D., Chen, Y., Lin, L., Xia, Y., Li, W., Li, G., Zhao, Z., Wu, K., Hou, Y., Yu, J., Xiao, W., Wang, G., Zhu, P., Chen, W., Bai, M., Jian, Y., Kristiansen, Karsten & Chen, Q., 2019, In: Journal of Experimental & Clinical Cancer Research. 38, 11 p., 261.

Research output: Contribution to journal › Journal article › peer-review

Interplay between food and gut microbiota in health and disease

Danneskiold-Samsøe, Niels Banhos, Dias de Freitas Queiroz Barros, H., Santos, R., Bicas, J. L., Cazarin, C. B. B., Madsen, Lise, Kristiansen, Karsten, Pastore, G. M., Brix, S. & Maróstica Júnior, M. R., 2019, In: Food Research International. 115, p. 23-31

Research output: Contribution to journal › Review › peer-review

Overexpression of cyclooxygenase-2 in adipocytes reduces fat accumulation in inguinal white adipose tissue and hepatic steatosis in high-fat fed mice

Danneskiold-Samsøe, Niels Banhos, Sonne, S. B., Larsen, J. M., Hansen, Ann Normann, Fjære, E., Isidor, Marie Sophie, Petersen, S., Henningsen, J., Severi, I., Sartini, L., Schobers, Y., Wolf, J., Nockhers, W. A., Wolfrum, C., Cinti, S., Sina, C., Hansen, Jacob B., Madsen, Lise, Brix, S. & Kristiansen, Karsten, 2019, In: Scientific Reports. 9, 13 p., 8979.

Research output: Contribution to journal › Journal article › peer-review

Genome Sequencing Explores Complexity of Chromosomal Abnormalities in Recurrent Miscarriage

Dong, Z., Yan, J., Xu, F., Yuan, J., Jiang, H., Wang, H., Chen, H., Zhang, L., Ye, L., Xu, J., Shi, Y., Yang, Z., Cao, Y., Chen, L., Li, Q., Zhao, X., Li, J., Chen, A., Zhang, W., Wong, H. G., Qin, Y., Zhao, H., Chen, Y., Li, P., Ma, T., Wang, W., Kwok, Y. K., Jiang, Y., Pursley, A. N., Chung, J. P. W., Hong, Y., Kristiansen, Karsten, Yang, H., Piña-Aguilar, R. E., Leung, T. Y., Cheung, S. W., Morton, C. C., Choy, K. W. & Chen, Z. J., 2019, In: American Journal of Human Genetics. 105, 6, p. 1102-1111 10 p.

Research output: Contribution to journal › Journal article › peer-review

The first chromosome-level genome for a marine mammal as a resource to study ecology and evolution

Fan, G., Zhang, Y., Liu, X., Wang, J., Sun, Z., Sun, S., Zhang, H., Chen, J., Lv, M., Han, K., Tan, X., Hu, J., Guan, R., Fu, Y., Liu, S., Chen, X., Xu, Q., Qin, Y., Liu, L., Bai, J., Wang, O., Tang, J., Lu, H., Shang, Z., Wang, B., Hu, G., Zhao, X., Zou, Y., Chen, A., Gong, M., Zhang, W., Lee, S. M., Li, S., Liu, J., Li, Z., Lu, Y., Sabir, J. S. M., Sabir, M. J., Khan, M., Hajrah, N. H., Yin, Y., Kristiansen, Karsten, Yang, H., Wang, J., Xu, X. & Liu, X., 2019, In: Molecular Ecology Resources. 19, 4, p. 944-956

Research output: Contribution to journal › Journal article › peer-review

Effects of exercise and dietary protein sources on adiposity and insulin sensitivity in obese mice

Fjære, E., Myrmel, L. S., Lützhøft, Ditte Olsen, Andersen, H., Holm, J. B., Kiilerich, P., Hannisdal, R., Liaset, B., Kristiansen, Karsten & Madsen, Lise, 2019, In: Journal of Nutritional Biochemistry. 66, p. 98-109

Research output: Contribution to journal › Journal article › peer-review

Prevotella-to-Bacteroides ratio predicts body weight and fat loss success on 24-week diets varying in macronutrient composition and dietary fiber: results from a post-hoc analysis

Hjorth, Mads Fiil, Blædel, T., Bendtsen, L. Q., Lorenzen, J. K., Holm, J. B., Kiilerich, P., Roager, Henrik Munch, Kristiansen, Karsten, Larsen, L. H. & Astrup, A., 1 Jan 2019, In: International Journal of Obesity. 43, 1, p. 149-157

Research output: Contribution to journal › Journal article › peer-review

Habitat fragmentation is associated with dietary shifts and microbiota variability in common vampire bats

Ingala, M. R., Becker, D. J., Holm, J. B., Kristiansen, Karsten & Simmons, N. B., 2019, In: Ecology and Evolution. 9, 11, p. 6508-6523 16 p.

Research output: Contribution to journal › Journal article › peer-review

Improving Species Identification of Ancient Mammals Based on Next-Generation Sequencing Data

Lan, T. M., Lin, Y., Njaramba-Ngatia, J., Guo, X. S., Li, R. G., Li, H. M., Kumar-Sahu, S., Wang, X., Yang, X. J., Guo, H. B., Xu, W. H., Kristiansen, Karsten, Liu, Huan & Xu, Y. C., 2019, In: Genes. 10, 7, 18 p., 509.

Research output: Contribution to journal › Journal article › peer-review

Human Paneth cell α-defensin-5 treatment reverses dyslipidemia and improves glucoregulatory capacity in diet-induced obese mice

Larsen, I. S., Fritzen, Andreas Mæchel, Carl, Christian Strini, Agerholm, M., Damgaard, Mads Vargas, Holm, J. B., Marette, A., Nordkild, P., Kiens, Bente, Kristiansen, Karsten, Wehkamp, J. & Jensen, Benjamin Anderschou Holbech, 2019, In: American Journal of Physiology: Endocrinology and Metabolism. 317, 1, p. E42-E52 11 p.

Research output: Contribution to journal › Journal article › peer-review

Seafood intake and the development of obesity, insulin resistance and type 2 diabetes

Liaset, B., Øyen, J., Jacques, H., Kristiansen, Karsten & Madsen, Lise, 2019, In: Nutrition Research Reviews. 32, 1, p. 146-167

Research output: Contribution to journal › Journal article › peer-review

Mechanisms preserving insulin action during high dietary fat intake

Lundsgaard, Anne-Marie, Holm, J. B., Sjøberg, K. A., Bojsen-Møller, K. N., Myrmel, L. S., Fjære, E., Jensen, Benjamin Anderschou Holbech, Nicolaisen, Trine Sand, Hingst, J. R., Hansen, S. L., Doll, S., Geyer, P. E., Deshmukh, Atul Shahaji, Holst, Jens Juul, Madsen, Lise, Kristiansen, Karsten, Wojtaszewski, Jørgen F P, Richter, Erik A. & Kiens, Bente, 2019, In: Cell Metabolism. 29, 1, p. 50-63, e1-e4 19 p.

Research output: Contribution to journal › Journal article › peer-review

The Impact of Different Animal-Derived Protein Sources on Adiposity and Glucose Homeostasis during Ad Libitum Feeding and Energy Restriction in Already Obese Mice

Myrmel, L. S., Fauske, K. R., Fjære, E., Bernhard, A., Liisberg, U., Hasselberg, A. E., Øyen, J., Kristiansen, Karsten & Madsen, Lise, 2019, In: Nutrients. 11, 5, 19 p., 1153.

Research output: Contribution to journal › Journal article › peer-review

Salmon in combination with high glycemic index carbohydrates increases diet-induced thermogenesis compared with salmon with low glycemic index carbohydrates: An acute randomized cross-over meal test study

Nielsen, L. V., Nyby, S., Klingenberg, L., Ritz, C., Sundekilde, U. K., Bertram, H. C., Westerterp-Plantenga, M. S., Liaset, B., Kristiansen, Karsten, Madsen, Lise & Raben, Anne, 2019, In: Nutrients. 11, 2, 19 p., 365.

Research output: Contribution to journal › Journal article › peer-review

The human milk microbiota is modulated by maternal diet

Padilha, M., Danneskiold-Samsøe, Niels Banhos, Brejnrod, A., Hoffmann, C., Cabral, V. P., Iaucci, J. D. M., Sales, C. H., Fisberg, R. M., Cortez, R. V., Brix, S., Taddei, C. R., Kristiansen, Karsten & Saad, S. M. I., 2019, In: Microorganisms. 7, 11, 18 p., 502.

Research output: Contribution to journal › Journal article › peer-review

Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial

Roager, Henrik Munch, Vogt, J. K., Kristensen, M. B., Hansen, L. B. S., Ibrügger, S., Mærkedahl, R. B., Bahl, M. I., Lind, M. V., Nielsen, R. L., Frøkiær, Hanne, Gøbel, R. J., Landberg, R., Ross, A. B., Brix, S., Holck, J., Meyer, A. S., Sparholt, M. H., Christensen, A. F., Carvalho, V., Hartmann, Bolette, Holst, Jens Juul, Rumessen, J. J., Linneberg, Allan René, Sicheritz-Pontén, T., Dalgaard, M. D., Blennow, Andreas, Frandsen, H. L., Villas-Bôas, S., Kristiansen, Karsten, drb459, drb459, Hansen, Torben, Ekstrøm, Claus Thorn, Ritz, C., Nielsen, H. B., Pedersen, Oluf Borbye, Gupta, R., Lauritzen, Lotte & Licht, T. R., Jan 2019, In: Gut. 68, 1, p. 83-93 11 p.

Research output: Contribution to journal › Journal article › peer-review

The Effect of Lean-Seafood and Non-Seafood Diets on Fecal Metabolites and Gut Microbiome: Results from a Randomized Crossover Intervention Study

Schmedes, M., Brejnrod, A. D., Aadland, E. K., Kiilerich, P., Kristiansen, Karsten, Jacques, H., Lavigne, C., Graff, I. E., Eng, Ø., Holthe, A., Mellgren, G., Young, J. F., Sundekilde, U. K., Liaset, B. & Bertram, H. C., 2019, In: Molecular Nutrition and Food Research. 63, 1, p. 1-8 1700976.

Research output: Contribution to journal › Journal article › peer-review

Sequencing reveals protective and pathogenic effects on development of diabetes of rare GLIS3 variants

Sun, J., Have, C. T., Hollensted, M., Grarup, Niels, Linneberg, Allan René, Pedersen, Oluf Borbye, Nielsen, J. S., Rungby, Jørgen, Christensen, C., Brandslund, I., Kristiansen, Karsten, Jun, W., Hansen, Torben & Gjesing, A. P., 2019, In: PLoS ONE. 14, 8, 10 p., e0220805.

Research output: Contribution to journal › Journal article › peer-review

Panel-based NGS reveals disease-causing mutations in hearing loss patients using BGISEQ-500 platform

Sun, Y., Yuan, J., Wu, L., Li, M., Cui, X., Yan, C., Du, L., Mao, L., Man, J., Li, W., Kristiansen, Karsten, Wu, X., Pan, W., Yang, Y. & Yang, Y., 2019, In: Medicine. 98, 12, p. 1-7 e14860.

Research output: Contribution to journal › Journal article › peer-review

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly

Wang, O., Chin, R., Cheng, X., Wu, M. K. Y., Mao, Q., Tang, J., Sun, Y., Anderson, E., Lam, H. K., Chen, D., Zhou, Y., Wang, L., Fan, F., Zou, Y., Xie, Y., Zhang, R. Y., Drmanac, S., Nguyen, D., Xu, C., Villarosa, C., Gablenz, S., Barua, N., Nguyen, S., Tian, W., Liu, J. S., Wang, J., Liu, X., Qi, X., CHEN, Ao, Wang, H., Dong, Y., Zhang, W., Alexeev, A., Yang, H., Wang, J., Kristiansen, Karsten, Xu, X., Drmanac, R. & Peters, B. A., 2019, In: Genome Research. 29, 5, p. 798-808

Research output: Contribution to journal › Journal article › peer-review

Dietary Protein Sources Differentially Affect the Growth of Akkermansia muciniphila and Maintenance of the Gut Mucus Barrier in Mice

Zhao, F., Zhou, G., Liu, X., Song, S., Xu, X., Hooiveld, G., Müller, M., Liu, L., Kristiansen, Karsten & Li, C., 2019, In: Molecular Nutrition & Food Research. 63, 23, 11 p., 1900589.

Research output: Contribution to journal › Journal article › peer-review

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

Zhong, H., Ren, H., Lu, Y., Fang, Chao, Hou, G., Yang, Z., Chen, B., Yang, F., Zhao, Y., Shi, Z., Zhou, B., Wu, J., Zou, H., Zi, J., Chen, J., Bao, X., Hu, Y., Gao, Y., Zhang, J., Xu, X., Hou, Y., Yang, H., Wang, J., Liu, S., Jia, H., Madsen, Lise, Brix, S., Kristiansen, Karsten, Liu, F. & Li, J., 2019, In: EBioMedicine. 47, p. 373-383 11 p.

Research output: Contribution to journal › Journal article › peer-review

Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children

Zhong, H., Penders, J., Shi, Z., Ren, H., Cai, K., Fang, Chao, Ding, Q., Thijs, C., Blaak, E. E., Stehouwer, C. D. A., Xu, X., Yang, H., Wang, J., Wang, J., Jonkers, D. M. A. E., Masclee, A. A. M., Brix, S., Li, J., Arts, I. C. W. & Kristiansen, Karsten, 2019, In: Microbiome. 7, p. 1-14 2.

Research output: Contribution to journal › Journal article › peer-review

Single-cell RNA-seq reveals distinct dynamic behavior of sex chromosomes during early human embryogenesis

Zhou, Q., Wang, T., Leng, L., Zheng, W., Huang, J., Fang, F., Yang, L., Chen, F., Lin, G., Wang, W. & Kristiansen, Karsten, 2019, In: Molecular Reproduction and Development. 86, 7, p. 871-882

Research output: Contribution to journal › Journal article › peer-review

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

Zou, Y., Xue, W., Luo, G., Deng, Z., Qin, P., Guo, R., Sun, H., Xia, Y., Liang, S., Dai, Y., Wan, D., Jiang, R., Su, L., Feng, Q., Jie, Z., Guo, T., Xia, Z., Liu, C., Yu, J., Lin, Y., Tang, S., Huo, G., Xu, X., Hou, Y., Liu, X., Wang, J., Yang, H., Kristiansen, Karsten, Li, J., Jia, H. & Xiao, L., 2019, In: Nature Biotechnology. 37, 2, p. 179-185

Research output: Contribution to journal › Journal article › peer-review

Aberrant intestinal microbiota in individuals with prediabetes

Allin, K. H., Tremaroli, V., Caesar, R., Jensen, Benjamin Anderschou Holbech, Damgaard, Mads Vargas, Bahl, M. I., Licht, T. R., Hansen, T. H., Nielsen, T., Dantoft, T. M., Linneberg, Allan René, Jørgensen, T., drb459, drb459, Kristiansen, Karsten, Franks, P. W., IMI-DIRECT consortium, I. C., Hansen, Torben, Bäckhed, G. F. & Pedersen, Oluf Borbye, Apr 2018, In: Diabetologia. 61, 4, p. 810-820 11 p.

Research output: Contribution to journal › Journal article › peer-review

Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia

Bai, H., Guo, X., Narisu, N., Lan, T., Wu, Q., Xing, Y., Zhang, Y., Bond, S. R., Pei, Z., Zhang, Y., Zhang, D., Jirimutu, J., Zhang, D., Yang, X., Morigenbatu, M., Zhang, L., Ding, B., Guan, B., Cao, J., Lu, H., Liu, Y., Li, W., Dang, N., Jiang, M., Wang, S., Xu, H., Wang, D., Liu, C., Luo, X., Gao, Y., Li, X., Wu, Zongze, Yang, L., Meng, F., Ning, X., Hashenqimuge, H., Wu, K., Wang, B., Suyalatu, S., Liu, Y., Ye, C., Wu, H., Leppälä, K., Li, L., Fang, L., Chen, Y., Xu, W., Li, T., Liu, X., Xu, X., Gignoux, C. R., Yang, H., Brody, L. C., Wang, J., Kristiansen, Karsten, Burenbatu, B., Zhou, H. & Yin, Y., 2018, In: Nature Genetics. 50, 12, p. 1696-1704

Research output: Contribution to journal › Journal article › peer-review

High intake of dairy during energy restriction does not affect energy balance or the intestinal microflora compared to low dairy intake in overweight individuals in a randomized controlled trial

Bendtsen, L. Q., Blædel, T., Holm, J. B., Lorenzen, J. K., Mark, A. B., Kiilerich, P., Kristiansen, Karsten, Astrup, A. & Larsen, L. H., 2018, In: Applied Physiology, Nutrition and Metabolism. 43, 1, p. 1-10 10 p.

Research output: Contribution to journal › Journal article › peer-review

Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers

Dai, Z., Coker, O. O., Nakatsu, G., Wu, W. K. K., Zhao, L., Chen, Z., Chan, F. K. L., Kristiansen, Karsten, Sung, J. J. Y., Wong, S. H. & Yu, J., 2018, In: Microbiome. 6, 12 p., 70.

Research output: Contribution to journal › Journal article › peer-review

Age-dependent alterations of glucose clearance and homeostasis are temporally separated and modulated by dietary fat

Damgaard, Mads Vargas, Pærregaard, S. I., Søgaard, I., Andersen, M. A., Paulson, J. N., Treebak, Jonas Thue, Sina, C., Holm, J. B., Kristiansen, Karsten & Jensen, Benjamin Anderschou Holbech, 2018, In: Journal of Nutritional Biochemistry. 54, p. 66-76 11 p.

Research output: Contribution to journal › Journal article › peer-review

Effects of Frozen Storage on Phospholipid Content in Atlantic Cod Fillets and the Influence on Diet-Induced Obesity in Mice

Fauske, K. R., Bernhard, A., Fjære, E., Myrmel, L. S., Frøyland, L., Kristiansen, Karsten, Liaset, B. & Madsen, Lise, 2018, In: Nutrients. 10, 6, 17 p., 695.

Research output: Contribution to journal › Journal article › peer-review

A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses

Han, M., Hao, L., Lin, Y., Li, F., Wang, J., Yang, H., Xiao, L., Kristiansen, Karsten, Jia, H. & Li, J., 2018, In: Microbiome. 6, 7 p., 43.

Research output: Contribution to journal › Journal article › peer-review

A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults

Hansen, L. B. S., Roager, Henrik Munch, Søndertoft, N. B., Gøbel, R. J., Kristensen, M. B., Vallès-Colomer, M., Vieira-Silva, S., Ibrügger, S., Lind, M. V., Mærkedahl, R. B., Bahl, M. I., Madsen, M. L., Havelund, J., Falony, G., Tetens, Inge , Nielsen, T., Allin, K. H., Frandsen, H. L., Hartmann, Bolette, Holst, Jens Juul, Sparholt, M. H., Holck, J., Blennow, Andreas, Moll, J. M., Meyer, A. S., Hoppe, C., Poulsen, J. H., Carvalho, V., Sagnelli, D., Dalgaard, M. D., Christensen, A. F., Lydolph, M., Ross, A. B., Villas-Bôas, S. G., Brix, S., Sicheritz-Pontén, T., Buschard, K., Linneberg, Allan René, Rumessen, J. J., Ekstrøm, Claus Thorn, Ritz, C., Kristiansen, Karsten, Nielsen, H. B., drb459, drb459, Færgeman, N. J., Raes, J., Frøkiær, Hanne, Hansen, Torben, Lauritzen, Lotte, Gupta, R., Licht, T. R. & Pedersen, Oluf Borbye, 2018, In: Nature Communications. 9, 13 p., 4630.

Research output: Contribution to journal › Journal article › peer-review

Efficacy and safety of faecal microbiota transplantation in patients with psoriatic arthritis: protocol for a 6-month, double-blind, randomised, placebo-controlled trial

Kragsnæs, M. S., Kjeldsen, J., Horn, H. C., Munk, H. L., Pedersen, F. M., Holt, H. M., Pedersen, J. K., Holm, D. K., Glerup, H., Andersen, V., Fredberg, U., Kristiansen, Karsten, Christensen, R. & Ellingsen, T., 2018, In: BMJ Open. 8, 4, 15 p., e019231.

Research output: Contribution to journal › Journal article › peer-review

Ibuprofen alters human testicular physiology to produce a state of compensated hypogonadism

Kristensen, D. M., Desdoits-Lethimonier, C., Mackey, Abigail, Dalgaard, M. D., De Masi, F., Munkbøl, C. H., Styrishave, Bjarne, Antignac, J., Le Bizec, B., Platel, C., Hay-Schmidt, Anders, Jensen, T. K., Lesné, L., Mazaud-Guittot, S., Kristiansen, Karsten, Brunak, Søren, Kjær, Michael, Juul, Anders & Jégou, B., 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 4, p. e715-e724 10 p.

Research output: Contribution to journal › Journal article › peer-review

The metagenome of the female upper reproductive tract

Li, F., Chen, C., Wei, W., Wang, Z., Dai, J., Hao, L., Song, L., Zhang, X., Zeng, L., Du, H., Tang, H., Liu, N., Yang, H., Wang, J., Madsen, Lise, Brix, S., Kristiansen, Karsten, Xu, X., Li, J., Wu, R. & Jia, H., 2018, In: GigaScience. 7, 10, p. 1-8 giy107.

Research output: Contribution to journal › Journal article › peer-review

Dissecting the expression landscape of mitochondrial genes in lung squamous cell carcinoma and lung adenocarcinoma

Li, N., Zhao, J., Ma, Y., Roy, B., Liu, R., Kristiansen, Karsten & Gao, Q., 2018, In: Oncology Letters. 16, 3, p. 3992-4000

Research output: Contribution to journal › Journal article › peer-review

Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes

Li, X., Liang, S., Xia, Z., Qu, J., Liu, H., Liu, C., Yang, H., Wang, J., Madsen, Lise, Hou, Y., Li, J., Jia, H., Kristiansen, Karsten & Xiao, L., 2018, In: GigaScience. 7, 9, p. 1-10 giy100.

Research output: Contribution to journal › Journal article › peer-review

Applied Hologenomics: Feasibility and Potential in Aquaculture

Limborg, Morten Tønsberg, Alberdi, Antton, Kodama, M., Roggenbuck, M., Kristiansen, Karsten & Gilbert, M Thomas P, 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.

Research output: Contribution to journal › Journal article › peer-review

Development and clinical validation of a circulating tumor DNA test for the identification of clinically actionable mutations in nonsmall cell lung cancer

Liu, L., Liu, H., Shao, D., Liu, Z., Wang, J., Deng, Q., Tang, H., Yang, H., Zhang, Y., Qiu, Y., Cui, F., Tan, M., Zhang, P., Li, Z., Liu, J., Liang, W., Wang, Y., Peng, Z., Wang, J., Yang, H., Mao, M., Kristiansen, Karsten, Ye, M. & He, J., 2018, In: Genes, Chromosomes & Cancer. 57, 4, p. 211-220 10 p.

Research output: Contribution to journal › Journal article › peer-review

Next generation sequencing-based molecular profiling of lung adenocarcinoma using pleural effusion specimens

Liu, L., Shao, D., Deng, Q., Tang, H., Wang, J., Liu, J., Guo, F., Lin, Y., Peng, Z., Mao, M., Kristiansen, Karsten, Ye, M. & He, J., 1 May 2018, In: Journal of Thoracic Disease. 10, 5, p. 2631-2637

Research output: Contribution to journal › Journal article › peer-review

Zinc finger and interferon-stimulated genes play a vital role in TB-IRIS following HAART in AIDS

Ma, J., Zhao, F., Su, W., Li, Q., Li, J., Ji, J., Deng, Y., Zhou, Y., Wang, X., Yang, H., Saksena, N. K., Kristiansen, Karsten, Wang, H. & Liu, Y., 2018, In: Personalized Medicine. 15, 4, p. 251-269

Research output: Contribution to journal › Journal article › peer-review

Dietary Proteins, Brown Fat, and Adiposity

Madsen, Lise, Myrmel, L. S., Fjære, E., Oyen, J. & Kristiansen, Karsten, 2018, In: Frontiers in Physiology. 9, p. 1-13 1792.

Research output: Contribution to journal › Review › peer-review

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, M. L., Danish Pan Genome Consortium, D. P. G. C., Brunak, Søren, Izarzugaza, J. M. G., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J., Eiberg, Hans Rudolf Lytchoff & Kristiansen, Karsten, 2018, In: BMC Bioinformatics. 19, p. 1-12 239.

Research output: Contribution to journal › Journal article › peer-review

Meals based on cod or veal in combination with high or low glycemic index carbohydrates did not affect diet-induced thermogenesis, appetite sensations, or subsequent energy intake differently

Nielsen, L. V., Nyby, S., Klingenberg, L., Juul-Hindsgaul, N., Rudnicki, R. C. J., Ritz, C., Liaset, B., Kristiansen, Karsten, Madsen, Lise & Raben, Anne, 1 Nov 2018, In: Appetite. 130, p. 199-208 10 p.

Research output: Contribution to journal › Journal article › peer-review

A gene catalogue of the Sprague-Dawley rat gut metagenome

Pan, H., Guo, R., Zhu, J., Wang, Q., Ju, Y., Xie, Y., Zheng, Y., Wang, Z., Li, T., Liu, Z., Lu, L., Li, F., Tong, B., Xiao, L., Xu, X., Li, R., Yuan, Z., Yang, H., Wang, J., Kristiansen, Karsten, Jia, H. & Liu, L., 2018, In: GigaScience. 7, 5, 8 p., giy055.

Research output: Contribution to journal › Journal article › peer-review

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

Peng, Y., Tang, S., Wang, D., Zhong, H., Jia, H., Cai, X., Zhang, Z., Xiao, M., Yang, H., Wang, J., Kristiansen, Karsten, Xu, X. & Li, J., 2018, In: GigaScience. 7, 11, p. 1-11 giy121.

Research output: Contribution to journal › Journal article › peer-review

CRISPR/Cascade 9-Mediated Genome Editing-Challenges and Opportunities

Roy, B., Zhao, J., Yang, C., Luo, W., Xiong, T., Li, Y., Fang, X., Gao, G., Singh, C. O., Madsen, Lise, Zhou, Y. & Kristiansen, Karsten, 2018, In: Frontiers in Genetics. 9, 12 p., 240.

Research output: Contribution to journal › Review › peer-review

Characterization of genomic clones using circulating tumor DNA in patients with hepatocarcinoma

Sun, Y., Meng, R., Cheng, Z., Fan, C., Wei, X., Yang, Y., Wu, G., Kristiansen, Karsten & Xue, J., 2018, In: Translational Cancer Research. 7, 2, p. 321-329 9 p.

Research output: Contribution to journal › Journal article › peer-review

Targeted next-generation sequencing as a comprehensive test for Mendelian diseases: a cohort diagnostic study

Sun, Y., Man, J., Wan, Y., Pan, G., Du, L., Li, L., Yang, Y., Qiu, L., Gao, Q., Dan, H., Mao, L., Cheng, Z., Fan, C., Yu, J., Lin, M., Kristiansen, Karsten, Shen, Y. & Wei, X., 2018, In: Scientific Reports. 8, p. 1-9 11646.

Research output: Contribution to journal › Journal article › peer-review