Karsten Kristiansen

Karsten Kristiansen

Professor

  • Genome Research and Molecular Bio Medicine

    Universitetsparken 13, 2100 København Ø, August Krogh Bygningen, Building: 6. sal

    Phone: +45 35 32 44 43

  1. 2021
  2. Accepted/In press

    Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda

    Guang, X., Lan, Tianming, Wan, Q. H., Huang, Y., Li, H., Zhang, M., Li, R., Zhang, Z., Lei, Y., Zhang, L., Zhang, H., Li, D., Li, Xiaoping, Li, H., Xu, Y., Qiao, M., Wu, D., Tang, K., Zhao, P., Lin, J., Sahu, S. K., Liang, Q., Jiang, W., Zhang, D., Xu, X., Liu, X., Lisby, Michael, Yang, H., Kristiansen, Karsten, Liu, Huan & Fang, S., 4 Feb 2021, (Accepted/In press) In: Science Bulletin. 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases

    Liu, X., Tang, S., Zhong, Huanzi, Tong, X., Jie, Zhuye, Ding, Q., Wang, D., Guo, R., Xiao, L., Xu, X., Yang, H., Wang, J., Zong, Y., Liu, W., Liu, X., Zhang, Yong, Brix, S., Kristiansen, Karsten, Hou, Y., Jia, H. & Zhang, Tao, 2021, In: Cell Discovery. 7, 15 p., 9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    An Expanded Gene Catalog of Mouse Gut Metagenomes

    Zhu, J., Ren, Huahui, Zhong, Huanzi, Li, Xiaoping, ZOU, Yuanqiang, Han, Mo, Li, M., Madsen, L., Kristiansen, Karsten & Xiao, L., 2021, In: mSphere. 6, 1, 12 p., e-01119-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data

    Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, Tianming & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients

    Zhong, Huanzi, Wang, Y., Shi, Z., Zhang, L., Ren, Huahui, He, W., Zhang, Z., Zhu, A., Zhao, J., Xiao, F., Yang, F., Liang, T., Ye, F., Zhong, B., Ruan, S., Gan, M., Zhu, J., Li, F., Li, F., Wang, D., Li, J., Ren, P., Zhu, S., Yang, H., Wang, J., Kristiansen, Karsten, Tun, H. M., Chen, W., Zhong, N., Xu, X., Li, Y., Li, J. & Zhao, J., 2021, In: Cell Discovery. 7, 14 p., 23.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Characterization of the human skin resistome and identification of two microbiota cutotypes

    Li, Z., Xia, J., Jiang, L., Tan, Y., An, Y., Zhu, X., Ruan, J., Chen, Z., Zhen, H., Ma, Y., Jie, Z., Xiao, L., Yang, H., Wang, J., Kristiansen, Karsten, Xu, X., Jin, L., Nie, C., Krutmann, J., Liu, X. & Wang, J., 2021, In: Microbiome. 9, 18 p., 47.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, L. C., Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Longitudinal Study of the Drug Resistance in Klebsiella pneumoniae of a Tertiary Hospital, China: Phenotypic Epidemiology Analysis (2013-2018)

    Pei, Na, Liu, Q., Cheng, X., Liang, T., Jian, Z., Wang, S., Zhong, Y., He, J., Zhou, M., Kristiansen, Karsten, Chen, W., Liu, W. & Li, J., 2021, In: Infection and Drug Resistance. 14, p. 613-626 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Lysates of Methylococcus capsulatus Bath induce a lean-like microbiota, intestinal FoxP3+RORγt+IL-17+ Tregs and improve metabolism

    Jensen, Benjamin Anderschou Holbech, Holm, J. B., Larsen, I. S., von Burg, N., Derer, S., Sonne, Si Brask, Pærregaard, S. I., Damgaard, Mads Vargas, Indrelid, S. A., Rivollier, A., Agrinier, A. L., Sulek, K., Arnoldussen, Y. J., Fjære, E., Marette, A., Angell, I. L., Rudi, K., Treebak, Jonas Thue, Madsen, L., Åkesson, C. P., Agace, W., Sina, C., Kleiveland, C. R., Kristiansen, Karsten & Lea, T. E., 2021, In: Nature Communications. 12, 19 p., 1093.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Accepted/In press

    Nutritional composition and bioactive compounds of Melipona seminigra pot-pollen from Amazonas, Brazil

    Rebelo, K. S., Cazarin, C. B. B., Iglesias, A. H., Stahl, M. A., Kristiansen, Karsten, Carvalho-Zilse, G. A., Grimaldi, R., Reyes, F. G. R., Danneskiold-Samsøe, Niels Banhos & Júnior, M. R. M., 2021, (Accepted/In press) In: Journal of the Science of Food and Agriculture. 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Status and perspectives of biomarker validation for diagnosis, stratification, and treatment

    Skov, J., Kristiansen, Karsten, Jespersen, J. & Olesen, P., 2021, In: Public Health. 190, p. 173-175 3 p.

    Research output: Contribution to journalLetterResearchpeer-review

  13. Published

    Systems-wide effects of short-term feed deprivation in obese mice

    Andersen, D., Roager, Henrik Munch, Zhang, L., Moll, J. M., Frandsen, H. L., Danneskiold-Samsøe, Niels Banhos, Hansen, Axel Kornerup, Kristiansen, Karsten, Licht, T. R. & Brix, Susanne, 2021, In: Scientific Reports. 11, 11 p., 5716.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut

    ZOU, Yuanqiang, Xue, W., Lin, X., Hu, T., Liu, S., Sun, C., Luo, G., Lv, M., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Frontiers in Microbiology. 12, 13 p., 632361.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. 2020
  16. Published

    A Chromosome-Level Genome Assembly of Dendrobium Huoshanense Using Long Reads and Hi-C Data

    Han, B., Jing, Y., Dai, J., Zheng, T., Gu, F., Zhao, Q., Zhu, F., Song, X., Deng, H., Wei, P., Song, C., Liu, D., Jiang, X., Wang, F., Chen, Y., Sun, C., Yao, H., Zhang, L., Chen, N., Chen, S., Li, X., Wei, Y., Ouyang, Z., Yan, H., Lu, J., Wang, H., Guo, L., Kong, L., Zhao, J., Li, S., Luo, L., Kristiansen, Karsten, Feng, Z., Sun, S., Chen, C., Yue, Z. & Chen, N., 2020, In: Genome Biology and Evolution. 12, 12, p. 2486-2490 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

    Li, J., Zhong, Huanzi, Ramayo-Caldas, Y., Terrapon, N., Lombard, V., Potocki-Veronese, G., Estellé, J., Popova, M., Yang, Z., Zhang, H., Li, F., Tang, S., Yang, F., Chen, W., Chen, B., Li, J., Guo, J., Martin, C., Maguin, E., Xu, X., Yang, H., Wang, J., Madsen, L., Kristiansen, Karsten, Henrissat, B., Ehrlich, S. D. & Morgavi, D. P., 2020, In: GigaScience. 9, 6, 15 p., giaa057.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Assessment of fecal DNA extraction protocols for metagenomic studies

    Yang, F., Sun, J., Luo, H., Ren, Huahui, Zhou, H., Lin, Y., Han, Mo, Chen, B., Liao, H., Brix, S., Li, J., Yang, H., Kristiansen, Karsten & Zhong, Huanzi, 2020, In: GigaScience. 9, 7, 12 p., giaa071.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Body fluid from the parasitic worm Ascaris suum inhibits broad-acting pro-inflammatory programs in dendritic cells

    Arora, Pankaj, Moll, J. M., Andersen, D., Workman, C. T., Williams, Andrew Richard, Kristiansen, Karsten & Brix, S., 2020, In: Immunology. 159, 3, p. 322-334

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Clinical characteristics of the BREATHE cohort: a real-life study on patients with asthma and COPD

    Backer, Vibeke, Klein, D. K., Bodtger, U., Romberg, K., Porsbjerg, Celeste Michala, Erjefält, J. S., Kristiansen, Karsten, Xu, R., Silberbrandt, A., Frøssing, L., Hvidtfeldt, M., Obling, N., Jarenbäck, L., Nasr, A., Tufvesson, E., Mori, M., Winther-Jensen, M., Karlsson, L., Nihlén, U., Flintegaard, T. V. & Bjermer, L., 2020, In: European Clinical Respiratory Journal. 7, 1, 11 p., 1736934.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Comparative Analysis of Sample Extraction and Library Construction for Shotgun Metagenomics

    Peng, Z., Zhu, X., Wang, Z., Yan, X., Wang, G., Tang, M., Jiang, A. & Kristiansen, Karsten, 2020, In: Bioinformatics and Biology Insights. 14, 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Data integration for prediction of weight loss in randomized controlled dietary trials

    Nielsen, R. L., Helenius, M., Garcia, S. L., Roager, Henrik Munch, Aytan-Aktug, D., Hansen, L. B. S., Lind, Mads Vendelbo, Vogt, Josef Korbinian, Dalgaard, M. D., Bahl, M. I., Jensen, C. B., Muktupavela, Rasa Audange, Warinner, C., Aaskov, V., Gøbel, R., Kristensen, M. B., Frøkiær, Hanne, Sparholt, M. H., Christensen, A. F., Vestergaard, H., Hansen, Torben, Kristiansen, Karsten, Brix, Susanne, Petersen, T. N., Lauritzen, Lotte, Licht, T. R., Pedersen, Oluf Borbye & Gupta, R., 2020, In: Scientific Reports. 10, 15 p., 20103.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Metagenome-wide association of gut microbiome features for schizophrenia

    Zhu, F., Ju, Y., Wang, W., Wang, Q., Guo, R., Ma, Q., Sun, Q., Fan, Y., Xie, Y., Yang, Z., Jie, Z., Zhao, B., Xiao, L., Yang, L., Zhang, T., Feng, J., Guo, L., He, X., Chen, Y., Chen, C., Gao, C., Xu, X., Yang, H., Wang, J., Dang, Y., Madsen, L., Brix, S., Kristiansen, Karsten, Jia, H. & Ma, X., 2020, In: Nature Communications. 11, 10 p., 1612.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Pretreatment Prevotella-to-Bacteroides ratio and markers of glucose metabolism as prognostic markers for dietary weight loss maintenance

    Hjorth, Mads Fiil, Christensen, Lars, Kjølbæk, Louise, Larsen, L. H., Roager, Henrik Munch, Kiilerich, P., Kristiansen, Karsten & Astrup, Arne, 2020, In: European Journal of Clinical Nutrition. 74, 2, p. 338-347 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Reply to: Transformation of naked mole-rat cells

    Zhao, J., Tian, X., Zhu, Y., Zhang, Z., Rydkina, E., Yuan, Y., Zhang, H., Roy, B., Cornwell, A., Nevo, E., Shang, X., Huang, R., Kristiansen, Karsten, Seluanov, A., Fang, X. & Gorbunova, V., 2020, In: Nature. 583, 7814, p. E8-E13

    Research output: Contribution to journalLetterResearchpeer-review

  26. Published

    Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age

    Padilha, M., Brejnrod, A., Danneskiold-Samsøe, Niels Banhos, Hoffmann, C., Iaucci, J. D. M., Cabral, V. P., Xavier-Santos, D., Taddei, C. R., Kristiansen, Karsten & Saad, S. M. I., 2020, In: Nutrients. 12, 4, 16 p., 1081.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    The anti-obesogenic effect of lean fish species is influenced by the fatty acid composition in fish fillets

    Fjære, E., Myrmel, L. S., Dybing, K., Kuda, O., Jensen, Benjamin Anderschou Holbech, Rossmeisl, M., Frøyland, L., Kristiansen, Karsten & Madsen, L., 2020, In: Nutrients. 12, 10, 18 p., 3038.

    Research output: Contribution to journalJournal articleResearchpeer-review

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ID: 6489714