Sarah Rennie

Sarah Rennie

Assistant Professor

Member of:

    ORCID: 0000-0001-9731-6957

    Publication year:
    All
    1 - 18 out of 18Page size: 50
    1. 2024
    2. Published

      Recommendations for Bioinformatic Tools in lncRNA Research

      Distefano, R., Ilieva, M., Rennie, Sarah & Uchida, S., 2024, In: Current Bioinformatics. 19, 1, p. 14-20 7 p.

      Research output: Contribution to journal › Review › Research › peer-review

    3. 2023
    4. Published

      Benchmarking RNA Editing Detection Tools

      Morales, D. R., Rennie, Sarah & Uchida, S., 2023, In: BioTech. 12, 3, 18 p., 56.

      Research output: Contribution to journal › Review › Research › peer-review

    5. Published

      DoxoDB: A Database for the Expression Analysis of Doxorubicin-Induced lncRNA Genes

      Distefano, R., Ilieva, M., Madsen, J. H., Rennie, Sarah & Uchida, S., 2023, In: Non-coding RNA. 9, 4, 24 p., 39.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Plant YTHDF proteins are direct effectors of antiviral immunity against an N6-methyladenosine-containing RNA virus

      Martínez-Pérez, M., Aparicio, F., Arribas Hernandez, Laura, Tankmar, Mathias Due, Rennie, Sarah, von Bülow, Sören, Lindorff-Larsen, Kresten, Brodersen, Peter & Pallas, V., 2023, In: EMBO Journal. 42, 18, 17 p., e113378.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Potential usages of A-to-I RNA editing patterns as diagnostic biomarkers

      Rodriguez Morales, D., Ilieva, M., Rennie, Sarah & Uchida, S., 2023, In: American journal of physiology. Cell physiology. 324, 4, p. C837-C842 6 p.

      Research output: Contribution to journal › Review › Research › peer-review

    8. Published

      Systematic Analysis of Long Non-Coding RNAs in Inflammasome Activation in Monocytes/Macrophages

      Qian, N., Distefano, R., Ilieva, M., Madsen, J. H., Rennie, Sarah & Uchida, S., 2023, In: Non-coding RNA. 9, 5, 16 p., 50.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      T2DB: A Web Database for Long Non-Coding RNA Genes in Type II Diabetes

      Distefano, R., Ilieva, M., Madsen, J. H., Ishii, H., Aikawa, M., Rennie, Sarah & Uchida, S., 2023, In: Non-coding RNA. 9, 3, 20 p., 30.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Transcription factor expression is the main determinant of variability in gene co-activity

      van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. 2022
    12. Published

      Plant YTHDF proteins are direct effectors of antiviral immunity against an m6A-containing RNA virus

      Martínez-Pérez, M., Aparicio, F., Arribas Hernandez, Laura, Tankmar, Mathias Due, Rennie, Sarah, Brodersen, Peter & Pallas, V., 2022, 36 p.

      Research output: Working paper › Preprint › Research

    13. Published

      Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

      Einarsson, H., Salvatore, Marco, Vaagenso, C., Alcaraz, N., Lange, Jette Bornholdt, Rennie, Sarah & Andersson, Robin, 2022, In: eLife. 2022, 36 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Transcription factor expression is the main determinant of variability in gene co-activity

      van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2022, 30 p.

      Research output: Working paper › Preprint › Research

    15. 2021
    16. Published

      Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

      Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S. & 31 others, Aken, B. L., Alam, I., Alam, T., Alasiri, R., Alhendi, A. M. N., Alinejad-Rokny, H., Alvarez, M. J., Andersson, Robin, Arakawa, T., Araki, M., Arbel, T., Lange, Jette Bornholdt, Boyd, M., Chen, Y., Coskun, M., Dalby, M., Ienasescu, H., Jørgensen, M., Kaczkowski, B., Kere, J., Li, K., Lilje, B., Nepal, C., Nguyen, Q. H., Nielsen, L. K., Rennie, Sarah, Sandelin, Albin Gustav, Valen, E., Vitezic, M., Vitting-Seerup, K. & FANTOM Consortium, F. C., 2021, In: Nature Communications. 12, 18 p., 3297.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

      Arribas Hernandez, Laura, Rennie, Sarah, Köster, T., Porcelli, C., Lewinski, M., Staiger, D., Andersson, Robin & Brodersen, Peter, 2021, In: eLife. 10, 33 p., e72375.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation

      Arribas Hernandez, Laura, Rennie, Sarah, Schon, M., Porcelli, C., Enugutti, B., Andersson, Robin, Nodine, M. D. & Brodersen, Peter, 2021, In: eLife. 10, 27 p., e72377.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      hyperTRIBER: a flexible R package for the analysis of differential RNA editing

      Rennie, Sarah, Magnusson, D. H. & Andersson, Robin, 2021, 12 p.

      Research output: Working paper › Preprint › Research

    20. 2018
    21. Published

      Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

      Rennie, Sarah, Dalby, M., Lloret-Llinares, M., Bakoulis, Stylianos, Dalager Vaagensø, C., Jensen, T. H. & Andersson, Robin, 2018, In: Nucleic Acids Research. 46, 11, p. 5455-5469 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

      Rennie, Sarah, Dalby, M., van Duin, Lucas & Andersson, Robin, 2018, In: Nature Communications. 9, 16 p., 487.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. 2016
    24. Published

      On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

      Ienasescu, H., Li, K., Andersson, Robin, Vitezic, M., Rennie, Sarah, Chen, Y., Vitting-Seerup, K., Lagoni, E., Boyd, M., Lange, Jette Bornholdt, de Hoon, M. J. L., Kawaji, H., Lassmann, T., FANTOM Consortium, F. C., Hayashizaki, Y., Forrest, A. R. R., Carninci, P. & Sandelin, Albin Gustav, 2016, In: Database: The Journal of Biological Databases and Curation. 2016, 0, 10 p., baw144.

      Research output: Contribution to journal › Journal article › Research › peer-review

    ID: 143262591