Søren Johannes Sørensen
Professor
Microbiology
Universitetsparken 15
2100 København Ø
- Published
The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity
Gao, C., Cao, H., Cai, P. & Sørensen, Søren Johannes, 2021, In: ISME Journal. 15, p. 29-40 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil
Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbial diversity in a permanently cold and alkaline environment in Greenland
Glaring, M. A., Vester, J. K., Lylloff, J. E., Abu Al-Soud, W., Sørensen, Søren Johannes & Stougaard, P., 2015, In: PLoS ONE. 10, 4, 22 p., e0124863.Research output: Contribution to journal › Journal article › Research › peer-review
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Associational Resistance to Predation by Protists in a Mixed Species Biofilm
Goh, Y. F., Røder, Henriette Lyng, Chan, S. H., Ismail, M. H., Madsen, Jonas Stenløkke, Lee, K. W. K., Sørensen, Søren Johannes, Givskov, Michael, Burmølle, Mette, Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.Research output: Contribution to journal › Journal article › Research › peer-review
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Azo dying of α-keratin material improves microbial keratinase screening and standardization
Gonzalo, M., Espersen, R., Al-Soud, W. A., Cristiano Falco, F., Hägglund, Per Mårten, Sørensen, Søren Johannes, Svensson, B. & Jacquiod, S., 2020, In: Microbial Biotechnology. 13, 4, p. 984-996Research output: Contribution to journal › Journal article › Research › peer-review
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High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples
Gosalbes, M. J., Vallès, Y., Jiménez-Hernández, N., Balle, C., Riva, P., Miravet-Verde, S., de Vries, Lisbeth Elvira, Llop, S., Agersø, Y., Sørensen, Søren Johannes, Ballester, F. & Francino, M. P., 2016, In: Journal of Developmental Origins of Health and Disease. 7, 01, p. 35-44 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ecosystem response of pasture soil communities to fumigation-induced microbial diversity reductions: an examination of the biodiversity-ecosystem function relationship
Griffiths, B. S., Ritz, K., Bardgett, R. D., Cook, R., Christensen, Søren, Ekelund, Flemming, Sørensen, Søren Johannes, Bååth, E., Bloem, J., De Ruiter, P. C., Dolfing, J. & Nicolardot, B., 2000, In: Oikos. 90, 2, p. 279-294Research output: Contribution to journal › Journal article › Research › peer-review
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An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities
Griffiths, B. S., Ritz, K., Wheatley, R., Kuan, H. L., Boag, B., Christensen, Søren, Ekelund, Flemming, Sørensen, Søren Johannes, Muller, S. & Bloem, J., 2001, In: Soil Biology & Biochemistry. 33, 12-13, p. 1713-1722Research output: Contribution to journal › Journal article › Research › peer-review
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Inducible Gene Expression by non-culturable bacteria in milk after pasterurization
Gunasekera, T. S., Atfield, A. H., Sørensen, Søren Johannes & Veal, D., 2002, In: Applied and Environmental Microbiology. 68(4), p. 1988-1994Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures
Gupta, S., Shariff, M., Chaturvedi, G., Sharma, A., Goel, N., Yadav, M., Mortensen, M. S., Sørensen, Søren Johannes, Mukerji, M. & Chauhan, N. S., 2021, In: Scientific Reports. 11, 11 p., 3963.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing
Gupta, S., Mortensen, M. S., Schjørring, S., Trivedi, Urvish, Vestergaard, G., Stokholm, Jakob, Bisgaard, H., Krogfelt, K. A. & Sørensen, Søren Johannes, 2019, In: Communications Biology. 2, p. 1-7 7 p., 291.Research output: Contribution to journal › Journal article › Research › peer-review
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Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota
Gupta, S., Hjelmsø, M. H., Lehtimäki, J., Li, Xuan Ji, Mortensen, M. S., Russel, J., Trivedi, Urvish, Rasmussen, Morten Arendt, Stokholm, Jakob, Bisgaard, H. & Sørensen, Søren Johannes, 2020, In: Microbiome. 8, 16 p., 115.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters
Gülay, A., Musovic, S., Albrechtsen, H., Abu Al-Soud, W., Sørensen, Søren Johannes & Smets, B. F., 2016, In: The ISME Journal. 10, 9, p. 2209-2222 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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DNA-and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters
Gülay, A., Fowler, S. J., Tatari, K., Thamdrup, B., Albrechtsen, H., Abu Al-Soud, W., Sørensen, Søren Johannes & Smets, B. F., 2019, In: mBio. 10, 6, 14 p., e01870-19.Research output: Contribution to journal › Journal article › Research › peer-review
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Neonatal metabolome of caesarean section and risk of childhood asthma
Gürdeniz, G., Ernst, M., Rago, D., Kim, M., Courraud, J., Stokholm, Jakob, Bønnelykke, Klaus, Björkbom, A., Trivedi, Urvish, Sørensen, Søren Johannes, Brix, Susanne, Hougaard, D., Rasmussen, Morten Arendt, Cohen, A. S., Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2022, In: The European Respiratory Journal. 59, 6, 11 p., 2102406.Research output: Contribution to journal › Journal article › Research › peer-review
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Vaginal dysbiosis in pregnancy associates with risk of emergency caesarean section: a prospective cohort study
Haahr, T., Clausen, Tine Dalsgaard, Thorsen, J., Rasmussen, Morten Arendt, Mortensen, M. S., Lehtimäki, J., Shah, S. A., Hjelmsø, M. H., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Vestergaard, G., Jacobsson, B., Larsson, P., Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2022, In: Clinical Microbiology and Infection. 28, 4, p. Pages 588-595Research output: Contribution to journal › Journal article › Research › peer-review
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Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora
Habibi, R., Tarighi, S., Behravan, J., Taheri, P., Kjøller, Annelise Helene, Brejnrod, A. D., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2017, In: Genome Announcements. 5, 13, 2 p., e00026-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors
Han, S., Delvigne, F., Brognaux, A., Charbon, G. E. & Sørensen, Søren Johannes, 2013, In: Biotechnology Progress. 29, 2, p. 553-563 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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All equal, all different?
Han, S., Lundin, L. & Sørensen, Søren Johannes, 2010.Research output: Contribution to conference › Poster › Research
- Published
Construction of biosensors to investigate physiological diversity in fermentation processes
Han, S., Lundin, L. & Sørensen, Søren Johannes, 2011.Research output: Contribution to conference › Poster › Research
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Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse
Hansen, Camilla Hartmann Friis, Krych, Lukasz, Nielsen, Dennis Sandris, Vogensen, Finn Kvist, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Buschard, K. & Hansen, Axel Kornerup, 2012, In: Diabetologia. 55, 8, p. 2285-2294 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The use of whole-cell biosensors to detect and quantify compounds or conditions affecting biological systems
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2001, In: Microbial Ecology. 42, 4, p. 483-494Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0
Hansen, Lars Hestbjerg, Bentzon-Tilia, M., Bentzon-Tilia, S., Norman, A., Rafty, L. & Sørensen, Søren Johannes, May 2011, In: P L o S One. 6, 5, 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Jensen, L. B., 1997, In: Gene. 186, 2, p. 167-173Research output: Contribution to journal › Journal article › Research › peer-review
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Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria
Hansen, Lars Hestbjerg, Jensen, L. B., Sørensen, H. I. & Sørensen, Søren Johannes, 2007, In: Journal of Antimicrobial Chemotherapy. 60, 1, p. 145-147Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Escherichia coli and Pseudomonas fluorescens
Hansen, Lars Hestbjerg, Knudsen, S. & Sørensen, Søren Johannes, 1998, In: Current Microbiology. 36, 6, p. 341-347Research output: Contribution to journal › Journal article › Research › peer-review
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Plasmid Encoded Multidrug Efflux Pump Conferring Resistance to Olaquindox in Escherichia coli
Hansen, Lars Hestbjerg, Johannesen, E., Burmølle, Mette, Sørensen, A. H. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 9, p. 3332-3337Research output: Contribution to journal › Journal article › Research › peer-review
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Versatile biosensor vectors for detection and quantification of mercury
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Letters. 193, 1, p. 123-127Research output: Contribution to journal › Journal article › Research › peer-review
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Detection of Oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry
Hansen, Lars Hestbjerg, Ferrari, B., Sørensen, A. H., Veal, D. & Sørensen, Søren Johannes, 2001, In: Applied and Environmental Microbiology. 67, 1, p. 239-244Research output: Contribution to journal › Journal article › Research › peer-review
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Determination of the genetic background for resistance to olaquindox, a Gram-negative growth promoter
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Jensen, L. B., 2006, In: DANMAP 2005 - July 2006. p. 100-100 1 p.Research output: Contribution to journal › Journal article › Research
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The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Jørgensen, H. S. & Jensen, L. B., 2005, In: Microbial Drug Resistance. 11, 4, p. 378-382Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor
Hansen, Lars Hestbjerg, Aarestrup, F. & Sørensen, Søren Johannes, 2002, In: Veterinary Microbiology. 87, 1, p. 51-57Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection and quantification of tetracyclines by whole cell biosensors
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Letters. 190, 2, p. 273-278Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation
Hansen, L. B. S., Ren, D., Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: The ISME Journal. 11, 1, p. 300-303 4 p.Research output: Contribution to journal › Letter › Research › peer-review
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EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments
Hassoun-Kheir, N., Stabholz, Y., Kreft, J-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J., Hough, R. & 1 others, , 2021, In: One Health. 13, 9 p., 100339.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review
Hassoun-Kheir, N., Stabholz, Y., Kreft, J., de la Cruz, R., Romalde, J. L., Nesme, Joseph, Sørensen, Søren Johannes, Smets, B. F., Graham, D. & Paul, M., 2020, In: Science of the Total Environment. 743, 11 p., 140804.Research output: Contribution to journal › Review › Research › peer-review
- Published
Quantitative Flow Cytometry to Understand Population Heterogeneity in Response to Changes in Substrate Availability in Escherichia coli and Saccharomyces cerevisiae Chemostats
Heins, A., Johanson, T., Han, S., Lundin, L., Carlquist, M., Gernaey, K. V., Sørensen, Søren Johannes & Lantz, A. E., 2019, In: Frontiers in Bioengineering and Biotechnology. 7, 15 p., 187.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures
Heins, A., Lundin, L., Nunes, I., Gernaey, K. V., Sørensen, Søren Johannes & Eliasson Lantz, A., 2019, In: Biotechnology Progress. 35, 3, e2796.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants
Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Prophylactic treatment of breast implants with a solution of gentamicin, vancomycin and cefazolin antibiotics for women undergoing breast reconstructive surgery: protocol for a randomised, double-blind, placebo-controlled trial (The BREAST-AB trial)
Hemmingsen, M. N., Larsen, A., Weltz, T. K., Ørholt, M., Wiberg, S., Bennedsen, A. K., Bille, C., Carstensen, L. F., Jensen, L. T., Bredgaard, R., Koudahl, V., Schmidt, Volker-Jürgen, Vester-Glowinski, Peter Viktor, Hølmich, Lisbet Rosenkrantz, Sørensen, Søren Johannes, Bjarnsholt, Thomas, Damsgaard, Tine M Engberg & Herly, Mikkel, 2022, In: BMJ Open. 12, 9, p. e058697Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pharmacokinetics of Locally Applied Antibiotic Prophylaxis for Implant-Based Breast Reconstruction
Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Norlin, C. B., Ørholt, M., Larsen, A., Bue, M., Lichtenberg, Mads, Hertz, Frederik Boëtius, Damsgaard, T. E., Vester-Glowinski, Peter Viktor, Sørensen, Søren Johannes, Bjarnsholt, Thomas & Herly, Mikkel, 2023, In: JAMA network open. 6, 12, 11 p., E2348414.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of Kocuria palustris strain W4
Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 1 p., e00074-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community
Herschend, J., Damholt, Z. B. V., Marquard, A. M., Svensson, B., Sørensen, Søren Johannes, Hägglund, Per Mårten & Burmølle, Mette, 28 Nov 2017, In: Scientific Reports. 7, 13 p., 16483.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in Paenibacillus amylolyticus in Response to Xanthomonas retroflexus
Herschend, J., Ernst, M., Koren, K., Melnik, A. V., da Silva, R. R., Røder, Henriette Lyng, Damholt, Z. B. V., Hägglund, Per Mårten, Svensson, B., Sørensen, Søren Johannes, Kühl, Michael, Dorrestein, P. C. & Burmølle, Mette, 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 805473.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse
Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00073-16.Research output: Contribution to journal › Journal article › Research › peer-review
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Draft genome sequences of two Kocuria isolates, K. salsicia G1 and K. rhizophila G2, isolated from a slaughterhouse in Denmark
Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00075-16.Research output: Contribution to journal › Journal article › Research › peer-review
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Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial
Hjelmsø, M. H., Shah, S. A., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Vestergaard, G., Mortensen, M. S., Brejnrod, A., Brix, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2020, In: Nature Communications. 11, 10 p., 426.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil
Holmsgaard, P. N., Norman, A., Hede, S. C., Poulsen, P. H. B., Al-Soud, W. A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 14 Jul 2011, In: Soil Biology & Biochemistry. 43, 10, p. 2152-2159 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing
Holmsgaard, P. N., Poulsen, P. H. B., Hede, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Aug 2010.Research output: Contribution to conference › Poster › Research
- Published
Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes
Holmsgaard, P. N., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2013, In: Journal of Microbiological Methods. 95, 2, p. 280-284 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season
Holmsgaard, P. N., Dealtry, S., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Springael, D., Smalla, K., Riber, Leise & Sørensen, Søren Johannes, Oct 2017, In: Environmental Pollution. 229, p. 854-862 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing
Holmsgaard, P. N., Poulsen, P., Hede, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Nov 2010.Research output: Contribution to conference › Poster › Research
- Published
The effect of early probiotic exposure on the preterm infant gut microbiome development
Hui, Y., Smith, Birgitte, Mortensen, M. S., Krych, Lukasz, Sørensen, Søren Johannes, Greisen, Gorm, Krogfelt, K. A. & Nielsen, Dennis Sandris, 2021, In: Gut Microbes. 13, 1, 15 p., 1951113.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium
Iskandar, C. F., Borges, F., Taminiau, B., Daube, G., Zagorec, M., Remenant, B., Leisner, Jørgen, Hansen, M. A., Sørensen, Søren Johannes, Mangavel, C., Cailliez-Grimal, C. & Revol-Junelles, A., 2017, In: Frontiers in Microbiology. 8, 14 p., 357.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Artificial selection of stable rhizosphere microbiota leads to heritable plant phenotype changes
Jacquiod, S., Spor, A., Wei, S., Munkager, V., Bru, D., Sørensen, Søren Johannes, Salon, C., Philippot, L. & Blouin, M., 2022, In: Ecology Letters. 25, 1, p. 189-201 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering conjugative plasmid permissiveness in wastewater microbiomes
Jacquiod, S. J. A., Brejnrod, A. D., Milani, S. M., Abu Al-Soud, W., Sørensen, Søren Johannes & Riber, Leise, Jul 2017, In: Molecular Ecology. 26, 13, p. 3556-3571 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomes provide valuable comparative information on soil microeukaryotes
Jacquiod, S. J. A., Stenbæk, J., Santos, S. S., Winding, A., Sørensen, Søren Johannes & Priemé, Anders, 2016, In: Research in Microbiology. 167, 5, p. 436-450 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass
Jakobsen, A. M., Bahl, M. I., Buschhardt, T., Hansen, T. B., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Nesbakken, T. & Aabo, S., 2019, In: International Journal of Food Microbiology. 295, p. 8-18 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment
Jakobsen, L., Sandvang, D., Hansen, Lars Hestbjerg, Bagger-Skjøt, L., Westh, Henrik T., Jørgensen, C., Hansen, D. S., Pedersen, B. M., Monnet, D. L., Frimodt-Møller, N., Sørensen, Søren Johannes & Hammerum, A. M., 2008, In: Environment International. 34, 1, p. 108-15 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J. & 2 others, , 2013, In: P L o S One. 8, 7, 17 p., e68484.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients
Jitwasinkul, T., Suriyaphol, P., Tangphatsornruang, S., Hansen, M. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Permpikul, C., Rongrungruang, Y. & Tribuddharat, C., 2016, In: Journal of Global Antimicrobial Resistance. 6, p. 57-66 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genome binning of viral entities from bulk metagenomics data
Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil.
Johnsen, A. R., de Lipthay, J. R., Sørensen, Søren Johannes, Ekelund, Flemming, Christensen, P., Andersen, O., Karlson, U. & Jacobsen, C. S., 2006, In: Environmental Microbiology. 8, 3, p. 535-45 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site
Johnson, A. R., Lipthay, J. R. D., Reichenberg, F., Sørensen, Søren Johannes, Andersen, O., Christensen, P., Binderup, M. & Jacobsen, C. S., 2006, In: Environmental Science & Technology (Washington). 40, 10, p. 3293-3298Research output: Contribution to journal › Journal article › Research › peer-review
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Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Jurburg, S. D., Nunes, I. M., Brejnrod, A. D., Jacquiod, S. J. A., Priemé, Anders, Sørensen, Søren Johannes, Van Elsas, J. D. & Salles, J. F., 2017, In: Frontiers in Microbiology. 8, 13 p., 1832.Research output: Contribution to journal › Journal article › Research › peer-review
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Autogenic succession and deterministic recovery following disturbance in soil bacterial communities
Jurburg, S. D., Nunes, I. M., Stegen, J. C., Le Roux, X., Priemé, Anders, Sørensen, Søren Johannes & Salles, J. F., 6 Apr 2017, In: Scientific Reports. 7, 11 p., 45691.Research output: Contribution to journal › Journal article › Research › peer-review
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Plasmids, viruses, and other circular elements in rat gut
Jørgensen, T. S., Hansen, M. A., Xu, Z., Tabak, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2017, Cold Spring Harbor Laboratory Press, 30 p.Research output: Working paper › Research
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Current strategies for mobilome research
Jørgensen, T. S., Kiil, A. S., Hansen, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2015, In: Frontiers in Microbiology. 5, 6 p., 750.Research output: Contribution to journal › Journal article › Research › peer-review
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Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
Jørgensen, T. S., Xu, Z., Hansen, M. A., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: P L o S One. 9, 2, 9 p., e87924.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease
Kanfra, X., Liu, B., Beerhues, L., Sørensen, Søren Johannes & Heuer, H., 2018, In: Frontiers in Plant Science. 9, p. 1-13 1666.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production
Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.Research output: Contribution to journal › Journal article › Research › peer-review
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Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures
Kang, D., Jacquiod, S., Herschend, J., Wei, S., Nesme, Joseph & Sørensen, Søren Johannes, 2020, In: Frontiers in Microbiology. 10, 10 p., 3010.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms
Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.Research output: Contribution to journal › Journal article › Research › peer-review
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Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity
Kang, D., Herschend, J., Abu Al-Soud, W., Mortensen, M. S., Gonzalo, M., Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2018, In: Bioresource Technology. 270, p. 303-310Research output: Contribution to journal › Journal article › Research › peer-review
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Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
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Bacterial chitinolytic communities respond to chitin and pH alteration in soil
Kielak, A., Cretoiu, M., Semenov, A., Sørensen, Søren Johannes & van Elsas, J., 2013, In: Applied and Environmental Microbiology. 79, 1, p. 263-272 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Rifaximin has minor effects on bacterial composition, inflammation and bacterial translocation in cirrhosis: a randomized trial
Kimer, N., Pedersen, J. S., Tavenier, J., Christensen, J. E., Busk, T. M., Hobolth, L., Krag, A., Abu Al-Soud, W., Mortensen, M. S., Sørensen, Søren Johannes, Møller, Søren & Bendtsen, Flemming, Jan 2018, In: Journal of Gastroenterology and Hepatology. 33, 1, p. 307-314 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner
Klümper, U., Dechesne, A., Riber, Leise, Brandt, Kristian Koefoed, Gülay, A., Sørensen, Søren Johannes & Smets, B. F., 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
Klümper, U., Riber, Leise, Dechesne, A., Sannazzaro, A. I., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Smets, B. F., 2015, In: I S M E Journal. 9, p. 934-945 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Hammer, K., Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2011. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Hammer, K., Pedersen, P. D., Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2011. 1 p.Research output: Contribution to conference › Poster › Research
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Hammer, K., Jacobsen, S., Pedersen, P. D., Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2014, In: International Journal of Food Microbiology. 176, p. 29-37 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species
Kot, Witold, Neve, H., Vogensen, Finn Kvist, Heller, K. J., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: Genome Announcements. 2, 4, 2 p., e00265-14.Research output: Contribution to journal › Journal article › Research › peer-review
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DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque
Kot, Witold, Vogensen, Finn Kvist, Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2014, In: Journal of Virological Methods. 196, p. 152-156 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Effect of root exudates and bacterial metabolic activity on conjugal gene transfer in the rhizosphere of a marsh plant
Kroer, Niels, Barkay, T., Sørensen, Søren Johannes & Weber, D., 1998, In: FEMS Microbiology Ecology. 25, 4, p. 375-384 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Effect of root exudates and bacterial metabolic activity on conjugal gene transfer in the rhizosphere of a marsch plant
Kroer, Niels, Barkay, T., Sørensen, Søren Johannes & Weber, D., 1998, In: FEMS Microbiology Ecology. 25, p. 375-384Research output: Contribution to journal › Journal article › Research
- Published
Novel and conserved bacterial mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
Kroer, Niels, Møller, A., Barkay, T., Hansen, M. A., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012.Research output: Contribution to conference › Poster › Research
- Published
Large-scale association analyses identify host factors influencing human gut microbiome composition
Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Rühlemann, M. C., Turpin, W., Moon, J. Y., Kim, H. N., Lüll, K., Barkan, E. & 84 others, , 2021, In: Nature Genetics. 53, p. 156-165 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecology and photobiology of chlorophyll d-containing cyanobacteria
Kühl, Michael, Behrendt, L., Trampe, Erik, Sørensen, Søren Johannes, Chen, M., Qvortrup, K. & Larkum, A., 2012.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Ecology and photobiology of chlorophyll d-containing cyanobacteria
Kühl, Michael, Behrendt, L., Trampe, Erik, Sørensen, Søren Johannes, Chen, M., Qvortrup, Klaus & Larkum, A. W. D., 2012.Research output: Contribution to conference › Poster › Research
- Published
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07
Larsen, Nadja, Vogensen, Finn Kvist, Gøbel, R. J., Michaelsen, Kim F., Abu Al-Soud, W., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2011, In: FEMS Microbiology Ecology. 75, 3, p. 482-496 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of L. acidophilus NCFM intake on insulin sensitivity and gut microbiota: a randomized placebo-controlled trial
Larsen, Nadja, Andreasen, A. S., Pedersen-Skovsgaard, T., Møller, K., van den Berg, F. W. J., Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Vogensen, Finn Kvist, Pedersen, Bente Klarlund & Jakobsen, M., Sep 2010.Research output: Contribution to conference › Conference abstract for conference › Research
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
Larsen, Nadja, Vogensen, Finn Kvist, van der Berg, Franciscus Winfried J, Nielsen, Dennis Sandris, Andreasen, Anne Sofie, Pedersen, Bente Klarlund, Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2010, In: PLoS ONE. 5, 2, p. e9085 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Urbanized microbiota in infants, immune constitution and later risk of atopic diseases
Lehtimäki, J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, Urvish, Vestergaard, G., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2021, In: Journal of Allergy and Clinical Immunology. 148, 1, p. 234-243 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases
Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors
Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Hansen, L., Ingmer, Hanne & Sørensen, Søren Johannes, 2012, In: International Journal of Food Microbiology. 152, 3, p. 107-115 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The lactic acid bacterium, Carnobacterium maltaromaticum possess a diverse range of potential virulence genes some of which are related to similar genes in Listeria monocytogenes
Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Ingmer, Hanne, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2010.Research output: Contribution to conference › Poster › Research
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
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