Kristoffer Enøe Johansson
Academic employee FU
Biomolecular Sciences
Ole Maaløes Vej 5
2200 København N.
- 2010
- Published
Beyond rotamers: a generative, probabilistic model of side chains in proteins
Harder, T., Boomsma, Wouter, Paluszewski, M., Frellsen, J., Johansson, Kristoffer Enøe & Hamelryck, Thomas Wim, 1 Jan 2010, In: B M C Bioinformatics. 11, p. 306Research output: Contribution to journal › Journal article › Research › peer-review
- 2011
- Published
Efficient, non-disruptive local moves for Monte Carlo sampling of proteins
Bottaro, S., Boomsma, Wouter, Johansson, Kristoffer Enøe, Andreetta, C., Hamelryck, Thomas Wim & Ferkinghoff-Borg, J., 2011, Next Generation Statistics in Biosciences: Proceedings of the 30th Leeds Annual Statistical Research (LASR) Workshop. Mardia, K. V., Gusnanto, A., Riley, A. D. & Voss, J. (eds.). University of Leeds, p. 127 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- 2012
- Published
Computational Protein Design
Johansson, Kristoffer Enøe, 2012, Department of Biology, Faculty of Science, University of Copenhagen. 151 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Subtle Monte Carlo updates in dense molecular systems
Bottaro, S., Boomsma, Wouter, Johansson, Kristoffer Enøe, Andreetta, C., Hamelryck, Thomas Wim & Ferkinghoff-Borg, J., 2012, In: Journal of Chemical Theory and Computation. 8, 2, p. 695-702 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
- Published
A simple probabilistic model of multibody interactions in proteins
Johansson, Kristoffer Enøe & Hamelryck, Thomas Wim, 2013, In: Proteins: Structure, Function, and Bioinformatics. 81, 8, p. 1340-1350 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure
Boomsma, Wouter, Frellsen, J., Harder, T. P., Bottaro, S., Johansson, Kristoffer Enøe, Tian, P., Stovgaard, K., Andreetta, C., Olsson, S., Valentin, J., Antonov, L. D., Christensen, A. S., Borg, M., Jensen, Jan Halborg, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2013, In: Journal of Computational Chemistry. 34, 19, p. 1697-1705 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phaistos user manual
Boomsma, Wouter, Bottaro, S., Hamelryck, Thomas Wim, Frellsen, J., Andreetta, C., Borg, M., Harder, T., Johansson, Kristoffer Enøe, Stovgaard, K. & Tian, P., 2013, 90 p.Research output: Book/Report › Book › Education
- 2014
- Published
Distinguishing tautomerism in the crystal structure of (Z)-N-(5-ethyl-2,3-dihydro-1,3,4-thiadiazol-2-ylidene)-4-methylbenzenesulfonamide using DFT-D calculations and (13)C solid-state NMR
Li, X., Bond, A. D., Johansson, Kristoffer Enøe & Van de Streek, J., 15 Aug 2014, In: Acta Crystallographica. Section C: Crystal Structure Communications. C70, Pt 8, p. 784-9 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
A soluble, folded protein without charged amino acid residues
Højgaard, C., Kofoed, Christian, Espersen, R., Johansson, Kristoffer Enøe, Villa, M., Willemoës, Martin, Lindorff-Larsen, Kresten, Teilum, Kaare & Winther, Jakob R., 2016, In: Biochemistry. 55, 28, p. 3949–3956 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational redesign of thioredoxin is hypersensitive towards minor conformational changes in the backbone template
Johansson, Kristoffer Enøe, Johansen, Nicolai Tidemand, Christensen, S., Horowitz, S., Bardwell, J. C. A., Olsen, Johan Gotthardt, Willemoës, Martin, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J., Hamelryck, Thomas Wim & Winther, Jakob R., 2016, In: Journal of Molecular Biology. 428, 21, p. 4361-4377 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Revision of the Crystal Structure of the First Molecular Polymorph in History
Johansson, Kristoffer Enøe & Van De Streek, J., 2 Mar 2016, In: Crystal Growth & Design. 16, 3, p. 1366-1370 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Local structure in the disordered solid solution of cis- and trans-perinones
Teteruk, J. L., Glinnemann, J., Heyse, W., Johansson, Kristoffer Enøe, van de Streek, J. & Schmidt, M. U., Jun 2016, In: Acta Crystallographica. Section B: Structural Science. B72, p. 416-433 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Computational Dehydration of Crystalline Hydrates Using Molecular Dynamics Simulations
Larsen, A. S., Rantanen, Jukka & Johansson, Kristoffer Enøe, 2017, In: Journal of Pharmaceutical Sciences. 106, 1, p. 348-355 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tracking dehydration mechanisms in crystalline hydrates with molecular dynamics simulations
Larsen, A. S., Ruggiero, M. T., Johansson, Kristoffer Enøe, Zeitler, J. A. & Rantanen, Jukka, Oct 2017, In: Crystal Growth & Design. 17, 10, p. 5017-5022 6 p.Research output: Contribution to journal › Letter › Research › peer-review
- 2018
- Published
Characterization of the hydrodynamics in a miniaturized dissolution apparatus
Johansson, Kristoffer Enøe, Plum, J., Mosleh, M., Madsen, C. M., Rades, Thomas & Mullertz, Anette , 2018, In: Journal of Pharmaceutical Sciences. 107, 4, p. 1095-1103 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protein evolution: Hacking an enzyme
Johansson, Kristoffer Enøe & Winther, Jakob R., 2018, In: Nature Chemical Biology. 14, 3, p. 202-204 3 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Structural heterogeneity and dynamics in protein evolution and design
Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2018, In: Current Opinion in Structural Biology. 48, p. 157-163 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comprehensive mapping of GFP structure-function relationship using high-density peptide arrays
Antonescu, O., Johansson, Kristoffer Enøe & Winther, Jakob R., 10 Jul 2018.Research output: Contribution to conference › Poster › Research › peer-review
- 2019
- Published
Shining light on split fluorescent protein fitness landscapes using peptide array-based deep substitutional scanning
ANTONESCU, O., Johansson, Kristoffer Enøe & Winther, Jakob R., 30 Jun 2019.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Improving folding properties of computationally designed proteins
Bjerre, B., Nissen, J., Madsen, M., Kamarauskaite, J., Norrild, R. K., Holm, Peter Christoffer, Nordentoft, M. K., O'Shea, Charlotte, Willemoës, Martin, Johansson, Kristoffer Enøe & Winther, Jakob R., 13 Dec 2019, In: Protein Engineering Design and Selection (Print). 32, 3, p. 145-151 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Global analysis of protein stability by temperature and chemical denaturation
Hamborg, L., Horsted, E. W., Johansson, Kristoffer Enøe, Willemoës, Martin, Lindorff-Larsen, Kresten & Teilum, Kaare, 2020, In: Analytical Biochemistry. 605, 7 p., 113863.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Charge Interactions in a Highly Charge-Depleted Protein
Hervø-Hansen, S., Højgaard, C., Johansson, Kristoffer Enøe, Wang, Y., Wahni, K., Young, D., Messens, J., Teilum, Kaare, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: Journal of the American Chemical Society. 143, 6, p. 2500-2508 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational and Experimental Assessment of Backbone Templates for Computational Redesign of the Thioredoxin Fold
Marin, Frederikke Isa, Johansson, Kristoffer Enøe, O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: The Journal of Physical Chemistry B. 125, 40, p. 11141-11149Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Substitutional landscape of a split fluorescent protein fragment using high-density peptide microarrays
Antonescu, O. N., Rasmussen, A., Damm, N. A. M., Heidemann, Ditte Fogh, Popov, R., Nesterov-Mueller, A., Johansson, Kristoffer Enøe & Winther, Jakob R., 2021, In: PLoS ONE. 16, 2, 17 p., e0241461.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Understanding the Origins of Loss of Protein Function by Analyzing the Effects of Thousands of Variants on Activity and Abundance
Cagiada, Matteo, Johansson, Kristoffer Enøe, Valanciute, A., Nielsen, S. V., Hartmann-Petersen, Rasmus, Yang, J. J., Fowler, D. M., Stein, Amelie & Lindorff-Larsen, Kresten, 2021, In: Molecular Biology and Evolution. 38, 8, p. 3235-3246Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
14-fold increased prevalence of rare glucokinase gene variant carriers in unselected Danish patients with newly diagnosed type 2 diabetes
Gjesing, A. P., Engelbrechtsen, L., Cathrine B. Thuesen, A., Have, C. T., Hollensted, M., Grarup, N., Linneberg, A., Steen Nielsen, J., Christensen, L. B., Thomsen, R. W., Johansson, K. E., Cagiada, M., Gersing, S., Hartmann-Petersen, R., Lindorff-Larsen, K., Vaag, A., Sørensen, H. T., Brandslund, I., Beck-Nielsen, H., Pedersen, O. & 2 others, , 2022, In: Diabetes Research and Clinical Practice. 194, 9 p., 110159.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conserved degronome features governing quality control associated proteolysis
Mashahreh, B., Armony, S., Johansson, Kristoffer Enøe, Chappleboim, A., Friedman, N., Gardner, R. G., Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Ravid, T., 2022, In: Nature Communications. 13, 1, 13 p., 7588.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Increasing protein stability by inferring substitution effects from high-throughput experiments
Norrild, R. K., Johansson, Kristoffer Enøe, O'Shea, Charlotte, Morth, J. P., Lindorff-Larsen, Kresten & Winther, Jakob R., 2022, In: Cell Reports Methods. 2, 11, 11 p., 100333.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Global analysis of multi-mutants to improve protein function
Johansson, Kristoffer Enøe, Lindorff-Larsen, Kresten & Winther, Jakob R., 2023, In: Journal of Molecular Biology. 435, 8, 15 p., 168034.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
HSP70-binding motifs function as protein quality control degrons
Abildgaard, A. B., Voutsinos, Vasileios, Petersen, S. D., Larsen, Fia Brunsgaard Valsted, Kampmeyer, Caroline, Johansson, Kristoffer Enøe, Stein, Amelie, Ravid, T., Andréasson, C., Jensen, M. K., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2023, In: Cellular and Molecular Life Sciences. 80, 1, 17 p., 32.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of Quality-control Degradation Signals in Yeast Proteins
Johansson, Kristoffer Enøe, Mashahreh, B., Hartmann-Petersen, Rasmus, Ravid, T. & Lindorff-Larsen, Kresten, 2023, In: Journal of Molecular Biology. 435, 2, 9 p., 167915.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid protein stability prediction using deep learning representations
Blaabjerg, Lasse Møller, Kassem, M. M., Good, L. L., Jonsson, Nicolas, Cagiada, Matteo, Johansson, Kristoffer Enøe, Boomsma, Wouter, Stein, Amelie & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 19 p., e82593.Research output: Contribution to journal › Journal article › Research › peer-review
- 2024
- Published
A mutational atlas for Parkin proteostasis
Clausen, L., Voutsinos, Vasileios, Cagiada, Matteo, Johansson, Kristoffer Enøe, Grønbæk-Thygesen, Martin, Nariya, S., Powell, R. L., Have, M. K. N., Østergaard, Vibe Hallundbæk, Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 17 p., 1541.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conformational ensembles of the human intrinsically disordered proteome
Tesei, Giulio, Trolle, A. I., Jonsson, Nicolas, Betz, J., Knudsen, F. E., Pesce, Francesco, Johansson, Kristoffer Enøe & Lindorff-Larsen, Kresten, 2024, In: Nature. 626, p. 897-904 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep mutational scanning reveals a correlation between degradation and toxicity of thousands of aspartoacylase variants
Grønbæk-Thygesen, Martin, Voutsinos, Vasileios, Johansson, Kristoffer Enøe, Schulze, Thea Klarsø, Cagiada, Matteo, Pedersen, Line, Clausen, L., Nariya, S., Powell, R. L., Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 18 p., 4026.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GMMA Can Stabilize Proteins Across Different Functional Constraints
Daffern, N., Johansson, Kristoffer Enøe, Baumer, Z. T., Robertson, N. R., Woojuh, J., Bedewitz, M. A., Davis, Z., Wheeldon, I., Cutler, S. R., Lindorff-Larsen, Kresten & Whitehead, T. A., 2024, In: Journal of Molecular Biology. 436, 11, 15 p., 168586.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 11048943
Most downloads
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1016
downloads
Beyond rotamers: a generative, probabilistic model of side chains in proteins
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
270
downloads
A soluble, folded protein without charged amino acid residues
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
232
downloads
Computational redesign of thioredoxin is hypersensitive towards minor conformational changes in the backbone template
Research output: Contribution to journal › Journal article › Research › peer-review
Published