Karsten Kristiansen

Karsten Kristiansen

Professor


  1. Published

    Seafood intake and the development of obesity, insulin resistance and type 2 diabetes

    Liaset, B., Øyen, J., Jacques, H., Kristiansen, Karsten & Madsen, L., 2019, In: Nutrition Research Reviews. 32, 1, p. 146-167

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Fish protein hydrolysate elevates plasma bile acids and reduces visceral adipose tissue mass in rats

    Liaset, B., Madsen, L., Hao, Q., Criales, G., Mellgren, G., Marschall, H., Hallenborg, P., Espe, M., Frøyland, L. & Kristiansen, Karsten, 2009, In: BBA General Subjects. 1791, 4, p. 254-62 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Characterization of the human skin resistome and identification of two microbiota cutotypes

    Li, Z., Xia, J., Jiang, L., Tan, Y., An, Y., Zhu, X., Ruan, J., Chen, Z., Zhen, H., Ma, Y., Jie, Z., Xiao, L., Yang, H., Wang, J., Kristiansen, K., Xu, X., Jin, L., Nie, C., Krutmann, J., Liu, X. & 1 others, Wang, J., 2021, In: Microbiome. 9, 18 p., 47.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Multi-omics analyses of serum metabolome, gut microbiome and brain function reveal dysregulated microbiota-gut-brain axis in bipolar depression

    Li, Z., Lai, J., Zhang, P., Ding, J., Jiang, J., Liu, C., Huang, H., Zhen, H., Xi, C., Sun, Y., Wu, L., Wang, L., Gao, X., Li, Y., Fu, Y., Jie, Z., Li, S., Zhang, D., Chen, Y., Zhu, Y. & 15 others, Lu, S., Lu, J., Wang, D., Zhou, H., Yuan, X., Li, X., Pang, L., Huang, M., Yang, H., Zhang, W., Brix, S., Kristiansen, Karsten, Song, X., Nie, C. & Hu, S., 2022, In: Molecular Psychiatry. 27, 1, 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

    Li, Y., Vinckenbosch, N., Tian, G., Huerta-Sanchez, E., Jiang, T., Jiang, H., Albrechtsen, A., Andersen, G., Cao, H., Korneliussen, T. S., Grarup, N., Guo, Y., Hellman, I., Jin, X., Li, Q., Liu, J., Liu, X., Sparsø, T., Tang, M., Wu, H. & 18 others, Wu, R., Yu, C., Zheng, H., Astrup, A., Bolund, L., Holmkvist, J., Jørgensen, T., Kristiansen, Karsten, Schmitz, O., Schwartz, Thue W., Zhang, X., Li, R., Yang, H., Wang, J., Hansen, Torben, Pedersen, Oluf Borbye, Nielsen, Rasmus & Wang, J., 2010, In: Nature Genetics. 42, 11, p. 969-72 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    The DNA methylome of human peripheral blood mononuclear cells

    Li, Y., Zhu, J., Tian, G., Li, N., Li, Q., Ye, M., Zheng, H., Yu, J., Wu, H., Sun, J., Zhang, H., Chen, Q., Luo, R., Chen, M., He, Y., Jin, X., Zhang, Q., Yu, C., Zhou, G., Sun, J. & 17 others, Huang, Y., Zheng, H., Cao, H., Zhou, X., Guo, S., Hu, X., Li, X., Kristiansen, Karsten, Bolund, L., Xu, J., Wang, W., Yang, H., Wang, J., Li, R., Beck, S., Wang, J. & Zhang, X., 1 Jan 2010, In: PLoS - Biology. 8, 11, p. e1000533-e1000533

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

    Li, Y., Zheng, H., Luo, R., Wu, H., Zhu, H., Li, R., Cao, H., Wu, B., Huang, S., Shao, H., Ma, H., Zhang, F., Feng, S., Zhang, W., Du, H., Tian, G., Li, J., Zhang, X., Li, S., Bolund, L. & 8 others, Kristiansen, Karsten, de Smith, A. J., Blakemore, A. I. F., Coin, L. J. M., Yang, H., Wang, J., Wang, J. & Wang, J., 2011, In: Nature Biotechnology. 29, 8, p. 723-730 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer

    Li, Y., Xu, X., Song, L., Hou, Y., Li, Z., Tsang, S., Li, F., Im, K., Wu, K., Wu, H., Ye, X., Li, G., Wang, L., Zhang, B., Liang, J., Xie, W., Wu, R., Jiang, H., Liu, X., Yu, C. & 20 others, Zheng, H., Jian, M., Nie, L., Wan, L., Shi, M., Sun, X., Tang, A., Guo, G., Gui, Y., Cai, Z., Li, J., Wang, W., Lu, Z., Zhang, X., Bolund, L., Kristiansen, Karsten, Wang, J., Yang, H., Dean, M. & Wang, J., 2012, In: GigaScience. 1, 12, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes

    Li, X., Liang, S., Xia, Z., Qu, J., Liu, H., Liu, C., Yang, H., Wang, J., Madsen, L., Hou, Y., Li, J., Jia, H., Kristiansen, Karsten & Xiao, L., 2018, In: GigaScience. 7, 9, p. 1-10 giy100.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    A catalog of bacterial reference genomes from cultivated human oral bacteria

    Li, W., Liang, H., Lin, X., Hu, T., Wu, Z., He, W., Wang, M., Zhang, J., Jie, Zhuye, Jin, X., Xu, X., Wang, J., Yang, H., Zhang, W., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2023, In: npj Biofilms and Microbiomes. 9, 1, 13 p., 45.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population

    Li, S., Besenbacher, S., Li, Y., Kristiansen, Karsten, Grarup, Niels, Albrechtsen, Anders, Sparsø, T. H., Korneliussen, Thorfinn Sand, Hansen, Torben, Wang, J., Nielsen, Rasmus, Pedersen, Oluf Borbye, Bolund, L. & Schierup, M. H., 2014, In: European Journal of Human Genetics. 22, p. 1040-1045 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    SOAP2: an improved ultrafast tool for short read alignment

    Li, R., Yu, C., Li, Y., Lam, T., Yiu, S., Kristiansen, Karsten & Wang, J., 2009, In: Bioinformatics. 25, 15, p. 1966-7 1 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    The sequence and de novo assembly of the giant panda genome

    Li, R., Fan, W., Tian, G., Zhu, H., He, L., Cai, J., Huang, Q., Cai, Q., Li, B., Bai, Y., Zhang, Z., Zhang, Y., Wang, W., Li, J., Wei, F., Li, H., Jian, M., Li, J., Zhang, Z., Nielsen, R. & 103 others, Li, D., Gu, W., Yang, Z., Xuan, Z., Ryder, O. A., Leung, F. C., Zhou, Y., Cao, J., Sun, X., Fu, Y., Fang, X., Guo, X., Wang, B., Hou, R., Shen, F., Mu, B., Ni, P., Lin, R., Qian, W., Wang, G., Yu, C., Nie, W., Wang, J., Wu, Z., Liang, H., Min, J., Wu, Q., Cheng, S., Ruan, J., Wang, M., Shi, Z., Wen, M., Liu, B., Ren, X., Zheng, H., Dong, D., Cook, K., Shan, G., Zhang, H., Kosiol, C., Xie, X., Lu, Z., Zheng, H., Li, Y., Steiner, C. C., Lam, T. T., Lin, S., Zhang, Q., Li, G., Tian, J., Gong, T., Liu, H., Zhang, D., Fang, L., Ye, C., Zhang, J., Hu, W., Xu, A., Ren, Y., Zhang, G., Bruford, M. W., Li, Q., Ma, L., Guo, Y., An, N., Hu, Y., Zheng, Y., Shi, Y., Li, Z., Liu, Q., Chen, Y., Zhao, J., Qu, N., Zhao, S., Tian, F., Wang, X., Wang, H., Xu, L., Liu, X., Vinar, T., Wang, Y., Lam, T., Yiu, S., Liu, S., Zhang, H., Li, D., Huang, Y., Wang, X., Yang, G., Jiang, Z., Wang, J., Qin, N., Li, L., Li, J., Bolund, L., Kristiansen, Karsten, Wong, G. K., Olson, M., Zhang, X., Li, S., Yang, H., Wang, J. & Wang, J., 2010, In: Nature. 463, 7279, p. 311-317 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. SOAP: short oligonucleotide alignment program

    Li, R., Li, Y., Kristiansen, Karsten & Wang, J., 2008, In: Bioinformatics. 24, 5, p. 713-714 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Building the sequence map of the human pan-genome

    Li, R., Li, Y., Zheng, H., Luo, R., Zhu, H., Li, Q., Qian, W., Ren, Y., Tian, G., Li, J., Zhou, G., Zhu, X., Wu, H., Qin, J., Jin, X., Li, D., Cao, H., Hu, X., Blanche, H., Cann, H. & 7 others, Zhang, X., Li, S., Bolund, L., Kristiansen, Karsten, Yang, H., Wang, J. & Wang, J., 2010, In: Nature Biotechnology. 28, 1, p. 57-63 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    SNP detection for massively parallel whole-genome resequencing

    Li, R., Li, Y., Fang, X., Yang, H., Wang, J., Kristiansen, Karsten & Wang, J., 2009, In: Genome Research. 19, 6, p. 1124-32 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    De novo assembly of human genomes with massively parallel short read sequencing

    Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, Karsten, Li, S., Yang, H., Wang, J. & Wang, J., 2010, In: Genome Research. 20, 2, p. 265-72 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Network of Interactions Between Gut Microbiome, Host Biomarkers, and Urine Metabolome in Carotid Atherosclerosis

    Li, R-J., Jie, Z-Y., Feng, Q., Fang, R-L., Li, F., Gao, Y., Xia, H-H., Zhong, H-Z., Tong, B., Madsen, L., Zhang, J-H., Liu, C-L., Xu, Z-G., Wang, J., Yang, H-M., Xu, X., Hou, Y., Brix, S., Kristiansen, K., Yu, X-L. & 2 others, Jia, H. & He, K., 2021, In: Frontiers in Cellular and Infection Microbiology. 11, 12 p., 708088.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Dissecting the expression landscape of mitochondrial genes in lung squamous cell carcinoma and lung adenocarcinoma

    Li, N., Zhao, J., Ma, Y., Roy, B., Liu, R., Kristiansen, Karsten & Gao, Q., 2018, In: Oncology Letters. 16, 3, p. 3992-4000

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    An integrated catalog of reference genes in the human gut microbiome

    Li, J., Jia, H., Cai, X., Zhong, H., Feng, Q., Sunagawa, S., Arumugam, M., Kultima, J. R., Prifti, E., Nielsen, T., Juncker, A., Manichanh, C., Chen, B., Zhang, W., Levenez, F., Wang, J., Xu, X., Xiao, L., Liang, S., Zhang, D. & 17 others, Zhang, Z., Chen, W., Zhao, H., Al-Aama, J. Y., Edris, S., Yang, H., Wang, J., Hansen, Torben, Nielsen, H. B., Brunak, S., Kristiansen, Karsten, Guarner, F., Pedersen, Oluf Borbye, Doré, J., Ehrlich, S. D., Bork, P. & Wang, J., 2014, In: Nature Biotechnology. 32, 8, p. 834-845 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

    Li, J., Zhong, H., Ramayo-Caldas, Y., Terrapon, N., Lombard, V., Potocki-Veronese, G., Estellé, J., Popova, M., Yang, Z., Zhang, H., Li, F., Tang, S., Yang, F., Chen, W., Chen, B., Li, J., Guo, J., Martin, C., Maguin, E., Xu, X. & 7 others, Yang, H., Wang, J., Madsen, L., Kristiansen, Karsten, Henrissat, B., Ehrlich, S. D. & Morgavi, D. P., 2020, In: GigaScience. 9, 6, 15 p., giaa057.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The metagenome of the female upper reproductive tract

    Li, F., Chen, C., Wei, W., Wang, Z., Dai, J., Hao, L., Song, L., Zhang, X., Zeng, L., Du, H., Tang, H., Liu, N., Yang, H., Wang, J., Madsen, L., Brix, S., Kristiansen, K., Xu, X., Li, J., Wu, R. & 1 others, Jia, H., 2018, In: GigaScience. 7, 10, p. 1-8 giy107.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Richness of human gut microbiome correlates with metabolic markers

    Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J-M., Kennedy, S., Leonard, P., Li, J., Burgdorf, K. S., Grarup, N., Jørgensen, T., Brandslund, I., Nielsen, H. B., Juncker, A., dos Santos, M. B. Q., Levenez, F. & 62 others, Pons, N., Rasmussen, Simon, Sunagawa, S., Tap, J., Tims, S., Zoetendal, E. G., Brunak, S., Clément, K., Doré, J., Kleerebezem, M., Kristiansen, Karsten, Renault, P., Sicheritz-Ponten, T., de Vos, W. M., Zucker, J., Raes, J., Hansen, Torben, Bork, P., Wang, J., Ehrlich, S. D., Pedersen, Oluf Borbye, Guedon, E., Delorme, C., Layec, S., Khaci, G., van de Guchte, M., Vandemeulebrouck, G., Jamet, A., Dervyn, R., Sanchez, N., Maguin, E., Haimet, F., Winogradski, Y., Cultrone, A., Leclerc, M., Juste, C., Blottière, H., Pelletier, E., LePaslier, D., Artiguenave, F., Bruls, T., Weissenbach, J., Turner, K., Parkhill, J., Antolin, M., Manichanh, C., Casellas, F., Boruel, N., Varela, E., Torrejon, A., Guarner, F., Denariaz, G., Derrien, M., van Hylckama Vlieg, J. E. T., Veiga, P., Oozeer, R., Knol, J., Rescigno, M., Brechot, C., Mérieux, A., M'Rini, C. & Yamada, T., 2013, In: Nature. 500, 7464, p. 541-546 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. CLONING AND CHARACTERIZATION OF THE GENE ENCODING THE HIGHLY EXPRESSED RIBOSOMAL PROTEIN L3 OF THE CILIATED PROTOZOAN TETRAHYMENA THERMOPHILA . EVIDENCE FOR DIFFERENTIAL CODON USAGE IN HIGHLY EXPRESSED GENES

    Larsen, L. K., Andreasen, P. H., Dreisig, H., Palm, L., Nielsen, H., Engberg, J. & Kristiansen, Karsten, 1999, In: Cell Biology International. 23, 8, p. 551-560

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Genomic organization of the mouse peroxisome proliferator-activatedreceptor b/d gene: alternative promoter usage and splicing yield transcriptsexhibiting differential translational efficiency

    Larsen, L. K., Amri, E., Mandrup, S., Pacot, C. & Kristiansen, Karsten, 2002, In: Biochemical Journal. 366, p. 767-75

    Research output: Contribution to journalJournal articleResearchpeer-review

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