Birgitte Regenberg
Professor
Ecology and Evolution
Universitetsparken 15
2100 København Ø
- Published
Genetic basis for Saccharomyces cerevisiae biofilm in liquid medium
Andersen, K. S., Bojsen, R. K., Sørensen, L. G. R., Weiss Nielsen, M., Lisby, Michael, Folkesson, A. & Regenberg, Birgitte, 2014, In: G3: Genes, Genomes, Genetics (Bethesda). 4, 9, p. 1671-1680 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A unifying model for extrachromosomal circular DNA load in eukaryotic cells
Arrey Tané, Gerard, Keating, S. T. & Regenberg, Birgitte, 2022, In: Seminars in Cell and Developmental Biology. 128, p. 40-50 11 p.Research output: Contribution to journal › Review › Research › peer-review
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Isolation, characterization, and genome assembly of Barnettozyma botsteinii sp. nov. and novel strains of Kurtzmaniella quercitrusa isolated from the intestinal tract of the termite Macrotermes bellicosus
Arrey Tané, Gerard, Li, G., Murphy, Rob, Guimaraes, L., Alizadeh, S., Poulsen, Michael & Regenberg, Birgitte, 2021, In: G3: Genes, Genomes, Genetics. 11, 12, 13 p., jkab342.Research output: Contribution to journal › Journal article › Research › peer-review
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Saccharomyces cerevisiae biofilm tolerance towards systemic antifungals depends on growth phase
Bojsen, R., Regenberg, Birgitte & Folkesson, A., 2014, In: B M C Microbiology. 14, 305, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Persistence and drug tolerance in pathogenic yeast
Bojsen, R. K., Regenberg, Birgitte & Folkesson, A., Feb 2017, In: Current Genetics. 63, 1, p. 19-22 4 p.Research output: Contribution to journal › Review › Research › peer-review
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Saccharomyces cerevisiae - a model to uncover molecular mechanisms for yeast biofilm biology
Bojsen, R. K., Andersen, K. S. & Regenberg, Birgitte, 2012, In: F E M S Immunology and Medical Microbiology. 65, 2, p. 169-182 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The synthetic amphipathic peptidomimetic LTX109 is a potent fungicide that disturbs plasma membrane integrity in a sphingolipid dependent manner
Bojsen, R. K., Torbensen, R., Larsen, C. E., Folkesson, A. & Regenberg, Birgitte, 2013, In: P L o S One. 8, 7, 8 p., e69483.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A common mechanism involving the TORC1 pathway can lead to amphotericin B-persistence in biofilm and planktonic Saccharomyces cerevisiae populations populations
Bojsen, R. K., Regenberg, Birgitte, Gresham, D. & Folkesson, A., 2016, In: Scientific Reports. 6, 10 p., 21874 .Research output: Contribution to journal › Journal article › Research › peer-review
Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: Example of transcript analysis as a tool in inverse metabolic engineering
Bro, C., Knudsen, S., Regenberg, Birgitte, Olsson, L. & Nielsen, J., 1 Nov 2005, In: Applied and Environmental Microbiology. 71, 11, p. 6465-6472 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells
Bro, C., Regenberg, Birgitte, Lagniel, G., Labarre, J., Montero-Lomelí, M. & Nielsen, J., 22 Aug 2003, In: Journal of Biological Chemistry. 278, 34, p. 32141-32149 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production
Bro, C., Regenberg, Birgitte, Förster, J. & Nielsen, J., 2006, In: Metabolic Engineering. 8, 2, p. 102-111 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide transcriptional response of a Saccharomyces cerevisiae strain with an altered redox metabolism
Bro, C., Regenberg, Birgitte & Nielsen, J., 2004, In: Biotechnology and Bioengineering. 85, 3, p. 269-276 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methods for the purification and detection of single nucleotide KRAS mutations on extrachromosomal circular DNA in human plasma
Hansen, Lasse Bøllehuus, Jakobsen, S. F., Zole, Egija, Noer, Julie Boertmann, Fang, L. T., Alizadeh, S., Johansen, Julia Sidenius, Mohiyuddin, M. & Regenberg, Birgitte, 2023, In: Cancer Medicine. 12, 17, p. 17679-17691 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
What Is Extrachromosomal Circular DNA and What Does It Do?
Chiu, R. W. K., Dutta, A., Hensson, A. G., Lo, Y. M. D., Mischel, P. & Regenberg, Birgitte, 2020, In: Clinical Chemistry. 66, 6, p. 754-759Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Regulation of apoptosis and autophagy in mouse and human skeletal muscle with aging and lifelong exercise training
Dethlefsen, M. M., Halling, Jens Frey, Møller, H. D., Plomgaard, Peter Stendahl, Regenberg, Birgitte, Jørgensen, Stine Ringholm & Pilegaard, Henriette, 2018, In: Experimental Gerontology. 111, p. 141-153Research output: Contribution to journal › Journal article › Research › peer-review
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Circular and Circulating DNA in Inflammatory Bowel Disease: From Pathogenesis to Potential Molecular Therapies
Di Vincenzo, F., Yadid, Y., Petito, V., Emoli, V., Masi, L., Gerovska, D., Araúzo-Bravo, M. J., Gasbarrini, A., Regenberg, Birgitte & Scaldaferri, F., 2023, In: Cells. 12, 15, 29 p., 1953.Research output: Contribution to journal › Review › Research › peer-review
- Published
The permease homologue Ssy1p controls the expression of amino acid and peptide transporter genes in Saccharomyces cerevisiae
Didion, T., Regenberg, Birgitte, Jørgensen, M. U., Kielland-Brandt, M. C. & Andersen, H. A., 3 Feb 1998, In: Molecular Microbiology. 27, 3, p. 643-650 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cysteine uptake by Saccharomyces cerevisiae is accomplished by multiple permeases
Düring-Olsen, L., Regenberg, Birgitte, Gjermansen, C., Kielland-Brandt, M. C. & Hansen, J., 15 Aug 1999, In: Current Genetics. 35, 6, p. 609-617 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae
Eckert-Boulet, N., Regenberg, Birgitte & Nielsen, J., 1 Mar 2005, In: Current Genetics. 47, 3, p. 139-149 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Deletion of RTS1, Encoding a Regulatory Subunit of Protein Phosphatase 2A, Results in Constitutive Amino Acid Signaling via Increased Stp1p Processing
Eckert-Boulet, N., Larsson, K., Wu, B., Poulsen, P., Regenberg, Birgitte, Nielsen, J. & Kielland-Brandt, M. C., 2006, In: Eukaryotic Cell. 5, 1, p. 174-179 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp 1 p and Stp2p
Eckert-Boulet, N., Nielsen, P. S., Friis, Carsten, Moreira dos Santos, M., Nielsen, J., Kielland-Brandt, M. C. & Regenberg, Birgitte, 1 Jun 2004, In: Yeast. 21, 8, p. 635-648 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Targeted removal of mitochondrial DNA from mouse and human extrachromosomal circular DNA with CRISPR-Cas9
Feng, Weijia, Arrey Tané, Gerard, Zole, Egija, Iv, W., Liang, Xue, Han, Peng, Mohiyuddin, M., Pilegaard, Henriette & Regenberg, Birgitte, 2022, In: Computational and Structural Biotechnology Journal. 20, p. 3059-3067 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Multicellular group formation in Saccharomyces cerevisiae
Fisher, Roberta May & Regenberg, Birgitte, 2019, In: Proceedings. Biological sciences. 286, 1910, 7 p., 20191098.Research output: Contribution to journal › Review › Research › peer-review
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Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus
Gresham, D., Usaite, R., Germann, S. M., Lisby, Michael, Botstein, D. & Regenberg, Birgitte, 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 43, p. 18551-6 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
Grotkjær, T., Winther, Ole, Regenberg, Birgitte, Nielsen, J. & Hansen, L. K., 2006, In: Bioinformatics. 22, 1, p. 58-67 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Advanced microscopy of microbial cells
Haagensen, J. A. J., Regenberg, Birgitte & Sternberg, C., 2011, In: Advances in Biochemical Engineering. Biotechnology. 124, p. 21-54 34 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Circular DNA in the human germline and its association with recombination
Henriksen, Rasmus Henrik Amund, Jenjaroenpun, P., Sjøstrøm, I. B., Jensen, Kristian HR, Prada Luengo, Inigo, Wongsurawat, T., Nookaew, I. & Regenberg, Birgitte, 2022, In: Molecular Cell. 82, 1, p. 209-217.e7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Did circular DNA shape the evolution of mammalian genomes?
Holt, Sylvester, Arrey Tané, Gerard & Regenberg, Birgitte, 2023, In: Trends in Biochemical Sciences. 48, 4, 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
To Be or Not to Be: Circular RNAs or mRNAs From Circular DNAs?
Iparraguirre, L., Prada Luengo, Inigo, Regenberg, Birgitte & Otaegui, D., 2019, In: Frontiers in Genetics. 10, 6 p., 940.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNAi as a Tool to Study Virulence in the Pathogenic Yeast Candida glabrata
Ishchuku, O. P., Ahmad, K. M., Koruza, K., Bojanovic, K., Sprenger, M., Kasper, L., Brunke, S., Hube, B., Säll, T., Hellmark, T., Gullstrand, B., Brion, C., Freel, K., Schacherer, J., Regenberg, Birgitte, Knechtts, W. & Piskur, J., 2019, In: Frontiers in Microbiology. 10, 17 p., 1679.Research output: Contribution to journal › Journal article › Research › peer-review
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Antifungal properties of peptidomimetics with an arginine-[β-(2,5,7-tri-tert-butylindol-3-yl)alanine]-arginine motif against Saccharomyces cerevisiae and Zygosaccharomyces bailii
Larsen, C. E., Larsen, C. J., Franzyk, Henrik & Regenberg, Birgitte, 2015, In: F E M S Yeast Research. 15, 3, 8 p., fov011.Research output: Contribution to journal › Journal article › Research › peer-review
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Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs
Lv, W., Pan, X., Han, P., Wang, Z., Feng, W., Xing, X., Wang, Q., Qu, K., Zeng, Y., Zhang, C., Xu, Z., Li, Y., Zheng, T., Lin, L., Liu, C., Liu, X., Li, H., Henriksen, R. A., Bolund, L., Lin, L. & 7 others, , 2022, In: Clinical and Translational Medicine. 12, 4, 16 p., e817.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A model for generating several adaptive phenotypes from a single genetic event: Saccharomyces cerevisiae GAP1 as a potential bet-hedging switch
Møller, H. D., Andersen, K. S. & Regenberg, Birgitte, 2013, In: Communicative & Integrative Biology. 6, 3, p. 1-4 4 p., e23933.Research output: Contribution to journal › Journal article › Research › peer-review
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Extrachromosomal circular DNA is common in yeast
Møller, H. D., Parsons, L., Jørgensen, T. S., Botstein, D. & Regenberg, Birgitte, 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 24, p. E3114–E3122 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Formation of extrachromosomal circular DNA from long terminal repeats of retrotransposons in Saccharomyces cerevisiae
Møller, H. D., Larsen, C. E., Parsons, L., Hansen, Anders Johannes, Regenberg, Birgitte & Mourier, T., 2016, In: G3: Genes, Genomes, Genetics. 6, 2, p. 453-462 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genome-wide purification of extrachromosomal circular DNA from eukaryotic cells
Møller, H. D., Bojsen, R. K., Tachibana, C., Parsons, L., Botstein, D. & Regenberg, Birgitte, 2016, In: Journal of Visualized Experiments. 110, 8 p., e54239.Research output: Contribution to journal › Journal article › Research › peer-review
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Circular DNA elements of chromosomal origin are common in healthy human somatic tissue
Møller, H. D., Mohiyuddin, M., Prada Luengo, Inigo, Sailani, M. R., Halling, Jens Frey, Plomgaard, Peter Stendahl, Maretty, L., Hansen, Anders Johannes, Snyder, M. P., Pilegaard, Henriette, Lam, H. Y. K. & Regenberg, Birgitte, 1 Dec 2018, In: Nature Communications. 9, 12 p., 1069.Research output: Contribution to journal › Journal article › Research › peer-review
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Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome
Møller, H. D., Ramos Madrigal, Jazmin, Prada Luengo, Inigo, Gilbert, M Thomas P & Regenberg, Birgitte, 2020, In: Genome Biology and Evolution. 12, 2, p. 3762-3777 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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CRISPR-C: circularization of genes and chromosome by CRISPR in human cells
Møller, H. D., Lin, L., Xiang, X., Petersen, T. S., Huang, J., Yang, L., Kjeldsen, E., Jensen, U. B., Zhang, X., Liu, X., Xu, X., Wang, J., Yang, H., Church, G. M., Bolund, L., Regenberg, Birgitte & Luo, Y., 2018, In: Nucleic Acids Research. 46, 22, p. 1-13 e131.Research output: Contribution to journal › Journal article › Research › peer-review
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Extrachromosomal circular DNA in cancer: history, current knowledge, and methods
Noer, Julie Boertmann, Hørsdal, O. K., Xiang, X., Luo, Y. & Regenberg, Birgitte, 2022, In: Trends in Genetics. 38, 7, p. 766-781 16 p.Research output: Contribution to journal › Review › Research › peer-review
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Extrachromosomal Circular DNA: An Emerging Potential Biomarker for Inflammatory Bowel Diseases?
Petito, V., Di Vincenzo, F., Putignani, L., Abreu, M. T., Regenberg, Birgitte, Gasbarrini, A. & Scaldaferri, F., 2024, In: Genes. 15, 4, 11 p., 414.Research output: Contribution to journal › Review › Research › peer-review
Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae
Piper, M. D. W., Daran-Lapujade, P., Bro, C., Regenberg, Birgitte, Knudsen, S., Nielsen, J. & Pronk, J. T., 4 Oct 2002, In: Journal of Biological Chemistry. 277, 40, p. 37001-37008 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads
Prada Luengo, Inigo, Krogh, Anders, Sørensen, L. M. & Regenberg, Birgitte, 2019, In: BMC Bioinformatics. 20, 9 p., 663.Research output: Contribution to journal › Journal article › Research › peer-review
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Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae
Prada Luengo, Inigo, Møller, H. D., Henriksen, Rasmus Henrik Amund, Gao, Q., Larsen, C. E., Alizadeh, S., Maretty, L., Houseley, J. & Regenberg, Birgitte, 2020, In: Nucleic Acids Research. 48, 14, p. 7883-7898 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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C-terminal deletion analysis of plant plasma membrane H+-ATPase: Yeast as a model system for solute transport across the plant plasma membrane
Regenberg, Birgitte, Villalba, J. M., Lanfermeijer, F. C. & Palmgren, Michael, 1 Oct 1995, In: Plant Cell. 7, 10, p. 1655-1666 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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GAP1, a novel selection and counter-selection marker for multiple gene disruptions in Saccharomyces cerevisiae
Regenberg, Birgitte & Hansen, J., 15 Sep 2000, In: Yeast. 16, 12, p. 1111-1119 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Dip5p mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate in Saccharomyces cerevisiae. Engelsk
Regenberg, Birgitte, Holmberg, Steen, Olsen, L. D. & Kielland-Brandt, M. C., 1998, In: Current Genetics. 33, 3, p. 171-177Research output: Contribution to journal › Journal article › Research › peer-review
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Clonal yeast biofilms can reap competitive advantages through cell differentiation without being obligatorily multicellular
Regenberg, Birgitte, Hanghøj, Kristian Ebbesen, Andersen, K. S. & Boomsma, Jacobus J., 2016, In: Royal Society of London. Proceedings B. Biological Sciences. 283, 1842, 8 p., 20161303.Research output: Contribution to journal › Journal article › Research › peer-review
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Substrate specificity and gene expression of the amino acid permeases in Saccharomyces cerevisiae
Regenberg, Birgitte, Düring-Olsen, L., Kielland-Brandt, M. C. & Holmberg, Steen, 1 Jan 1999, In: Current Genetics. 36, 6, p. 317-328 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Use of laminar flow patterning for miniaturised biochemical assays
Regenberg, Birgitte, Krühne, U., Beyer, M., Pedersen, L. H., Simón, M., Thomas, O. R. T., Nielsen, J. & Ahl, T., Dec 2004, In: Lab on a Chip. 4, 6, p. 654-657 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Amino acid residues important for substrate specificity of the amino acid permeases Can l p and Gnp l p in Saccharomyces cerevisiae
Regenberg, Birgitte & Kielland-Brandt, M. C., 5 Dec 2001, In: Yeast. 18, 15, p. 1429-1440 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae
Regenberg, Birgitte, Grotkjaer, T., Winther, Ole, Fausbøll, A., Akesson, M., Bro, C., Hansen, L. K., Brunak, Søren & Nielsen, Jens Bo, 2006, In: Genome Biology (Online Edition). 7, 11, p. R107Research output: Contribution to journal › Journal article › Research › peer-review
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Lifelong physical activity is associated with promoter hypomethylation of genes involved in metabolism, myogenesis, contractile properties and oxidative stress resistance in aged human skeletal muscle
Sailani, M. R., Halling, Jens Frey, Møller, H. D., Lee, H., Plomgaard, Peter Stendahl, Pilegaard, Henriette, Snyder, M. P. & Regenberg, Birgitte, 2019, In: Scientific Reports. 9, p. 1-11 3272.Research output: Contribution to journal › Journal article › Research › peer-review
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Amino acid transporter genes are essential for FLO11-dependent and FLO11-independent biofilm formation and invasive growth in Saccharomyces cerevisiae
Torbensen, R., Møller, H. D., Gresham, D., Alizadeh, S., Ochmann, D., Boles, E. & Regenberg, Birgitte, 2012, In: P L o S One. 7, 7, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation
Usaite, R., Patil, K. R., Grotkjær, T., Nielsen, J. & Regenberg, Birgitte, 1 Sep 2006, In: Applied and Environmental Microbiology. 72, 9, p. 6194-6203 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences
Wanchai, V., Jenjaroenpun, P., Leangapichart, T., Arrey Tané, Gerard, Burnham, C. M., Tümmler, M. C., Delgado-Calle, J., Regenberg, Birgitte & Nookaew, I., 2022, In: Briefings in Bioinformatics. 23, 6, 11 p., bbac422.Research output: Contribution to journal › Journal article › Research › peer-review
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Pseudomonas aeruginosa and Saccharomyces cerevisiae biofilm in flow cells
Weiss Nielsen, M., Sternberg, C., Molin, S. & Regenberg, Birgitte, 2011, In: Journal of Visualized Experiments. 47, p. pii:2383Research output: Contribution to journal › Journal article › Research › peer-review
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Division of labour in the yeast: Saccharomyces cerevisiae
Wloch-Salamon, D. M., Fisher, Roberta May & Regenberg, Birgitte, Oct 2017, In: Yeast. 34, 10, p. 399-406 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
The roles of galactitol, galactose-1-phosphate, and phosphoglucomutase in galactose-induced toxicity in Saccharomyces cerevisiae
de Jongh, W. A., Bro, C., Ostergaard, S., Regenberg, Birgitte & Olsson, L., 2008, In: Biotechnology and Bioengineering (Print). 101, 2, p. 317-26 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Variation of extrachromosomal circular DNA in cancer cell lines
dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 546549
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Genetic basis for Saccharomyces cerevisiae biofilm in liquid medium
Research output: Contribution to journal › Journal article › Research › peer-review
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777
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Amino acid transporter genes are essential for FLO11-dependent and FLO11-independent biofilm formation and invasive growth in Saccharomyces cerevisiae
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The synthetic amphipathic peptidomimetic LTX109 is a potent fungicide that disturbs plasma membrane integrity in a sphingolipid dependent manner
Research output: Contribution to journal › Journal article › Research › peer-review
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